Hi,
no, the order should not matter. There were some issues with header
parsing in older versions of htslib and those should be all fixed. If
you encounter anything odd in the new version, please open an issue on
github with a reproducible test case.
Best wishes,
Petr
On 29/11/2021 10:53, Thomas Juettemann wrote:
Hello Everyone,
another hopefully simple question:
Does the order of the Metadata section matter? To be more specific,
does it matter if metadata types are not in a block?
For example:
[...]
FORMAT
FORMAT
INFO
CONTIG
CONTIG
INFO
CONTIG
FORMAT
[...]
I'm experiencing some records being lost when using bcftools sort 1.9,
and I am wondering if that could be the reason. It does not happen
when using the latest version.
Thanks,
Thomas
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