Bug#859871: r-cran-sp: autopkgtests depend on non-existent r-cran-rgeos

2017-04-08 Thread Graham Inggs
Source: r-cran-sp Version: 1:1.2-4-1 Hi Maintainer Autopkgtests of r-cran-sp have been failing since the upload of 1:1.2-4-1 [1] with the error: badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a cur

Bug#860697: deal.ii: FTBFS on i386: build-dependency not installable: trilinos-all-dev

2017-04-19 Thread Graham Inggs
Control: severity -1 wishlist On 19 April 2017 at 09:14, Lucas Nussbaum wrote: >> The following packages have unmet dependencies: >> sbuild-build-depends-deal.ii-dummy : Depends: trilinos-all-dev but it is >> not installable >> E: Unable to correct problems, you have held broken packages. >> ap

Bug#862969: r-cran-sp needs recompilation for R 3.4.0 ?

2017-05-19 Thread Graham Inggs
On 19 May 2017 at 14:55, Theodore Lytras wrote: > It was working until recently, i.e. before the upgrade from R 3.3 to 3.4. r-base in testing is 3.3.3-1 r-base in unstable is 3.4.0-1 and is blocked from migration due to #861333 > If I uninstall the debian package and compile the R source package

Bug#863686: freemat: fails to start with llvm error

2017-05-30 Thread Graham Inggs
On 30/05/2017 06:45, Stuart Prescott wrote: Starting a fresh installation of freemat fails: $ freemat : CommandLine Error: Option 'x86-machine-combiner' registered more than once! LLVM ERROR: inconsistency in registered CommandLine options I see the same here. A no-change rebuild with llvm-3

Bug#863795: freemat: fails to start if ~/Private exists

2017-05-31 Thread Graham Inggs
Source: freemat Version: 4.0-2 Severity: normal Forwarded: https://sourceforge.net/p/freemat/bugs/489/ As reported to Ubuntu [1]: Freemat does not start if there is a file or a directory named Private in the user's home directory. This still affects freemat 4.2. [1] https://bugs.launchpad.n

Bug#850150: freemat ftbfs with LLVM 3.9

2017-06-05 Thread Graham Inggs
The attached patch fixes the build with LLVM 4.0. However, JIT still needs to be re-enabled and properly tested, see #863794. Description: Fix build failure with default LLVM 4.0 Author: Graham Inggs Last-Update: 2017-06-03 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -258,7 +258,7

Bug#863794: freemat: please re-enable LLVM support

2017-06-05 Thread Graham Inggs
How to verify that JIT is functioning correctly. Check whether JIT is enabled: --> jitcontrol ans = on Enable it if needed: --> jitcontrol('on') Run something that can be JIT compiled: --> A=0; for j=1:100; A=A+j; end Debug window in bottom-left should show 'Block JIT compiled at line 1

Bug#863793: freemat: please enable build-time and autopkgtest tests

2017-06-05 Thread Graham Inggs
I have this mostly working in Ubuntu, except s390x segfaults often. I'll push to git soon. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#864364: freemat: toolbox missing diff() and run_tests()

2017-06-07 Thread Graham Inggs
Source: freemat Version: debian/4.2+dfsg1-1_exp1 Hi Maintainer The diff() and run_tests() functions are missing from the freemat toolbox. The missing diff() function also causes the hist() function to fail. The run_tests() function provides a convenient way for a user to run the freemat tests aft

Bug#864364: freemat: toolbox missing diff() and run_tests()

2017-06-07 Thread Graham Inggs
Control: tags -1 + pending These files are not very big, so instead of generating a new tarball, we can restore them with a patch until the next upstream release. I have pushed this to git [1], as well updating Files-Excluded, and enabling the diff() and hist() tests. Please let me know if you ha

Bug#864443: pytables: ftbfs on armhf

2017-06-08 Thread Graham Inggs
On 8 June 2017 at 19:53, Michael Hudson-Doyle wrote: > pytables currently ftbfs on armhf Ubuntu, and it turns out it ftbfs on armhf > Debian too -- attaching the tail of a build log from a Debian porter box. It > started failing on Ubuntu in late January according to autopkgtest runs with > the o

Bug#593231: freemat: window created, but input ignored

2017-06-08 Thread Graham Inggs
Hi Julian On 08/16/2010 03:58 PM, Julian Andres Klode wrote: > You can start freemat and the window appears, but is empty. Entering > something into it has no effect. Are you able to reproduce this behaviour with freemat 4.2+dfsg1-4 in Stretch? Regards Graham -- debian-science-maintainers mail

Bug#864443: pytables: ftbfs on armhf

2017-07-05 Thread Graham Inggs
This package subsequently built in Ubuntu and I have just confirmed that it now builds on harris.d.o. There is already a binNMU pending for armhf, so if that is successful, this bug may be closed. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org htt

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

2017-07-16 Thread Graham Inggs
On 16 July 2017 at 13:12, Drew Parsons wrote: > Testing trilinos build on a porterbox for the mumps 5.1.1 transition. > > The following tests FAILED: > 617 - ML_MLP_NonSym_MPI_4 (Failed) > 668 - Phalanx_dag_manager_MPI_1 (Failed) > > Not sure if it's the new mumps, new openmpi 2.1.1 or som

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

2017-07-16 Thread Graham Inggs
On 16 July 2017 at 20:40, Nico Schlömer wrote: > I've disabled the phalanx tests in master, and also fixed two other things. > Perhaps it's time for an upload? Doing a test build now, will upload if successful. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.d

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

2017-07-16 Thread Graham Inggs
Uploaded, please downgrade the severity of this bug once the builds are successful. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#868873: dependence on libmumps-4.10.0 _AND_ libmumps-5.1.1 breaks make

2017-07-19 Thread Graham Inggs
On 19/07/2017 13:32, Joachim Wuttke wrote: Since the recent update of Debian/testing from libmumps-4.10.0 to libmumps-5.1.1, trilinos-all depends on both of them. This breaks my build: make[2]: *** No rule to make target '/usr/lib/libsmumps.so', needed by after providing an ad-hoc link /usr

Bug#868873: dependence on libmumps-4.10.0 _AND_ libmumps-5.1.1 breaks make

2017-07-23 Thread Graham Inggs
On 23 July 2017 at 18:07, Nico Schlömer wrote: > Hm, funny! I don't get how libtrilinos-amesos12 should depend on > libmumps-4.10.0 when 5.1.1 is available. libtrilinos-amesos12/12.10.1-3 depends on libmumps-4.10.0 because libtrilinos_amesos.so.12 is linked to libdmumps-4.10.0.so and libmumps_com

Bug#868873: dependence on libmumps-4.10.0 _AND_ libmumps-5.1.1 breaks make

2017-07-24 Thread Graham Inggs
On 24/07/2017 10:39, Nico Schlömer wrote: Thanks, Graham, for the analysis. You are welcome. It seems the Stretch freeze was so long that we've forgotten how transitions work. :) Some helpful references: https://wiki.debian.org/Teams/ReleaseTeam/Transitions https://wiki.debian.org/Transit

Bug#868523: FTBFS: test failed 617 ML_MLP_NonSym_MPI_4, 668 Phalanx_dag_manager_MPI_1

2017-07-24 Thread Graham Inggs
On 24/07/2017 10:40, Nico Schlömer wrote: Sounds more like a gAM bug then. Can this be closed? I intentionally didn't close this bug because the tests still fail if they are enabled. If the problem is caused by another package, then this bug should be reassigned to that package and marked t

Bug#870128: libgpuarray: broken autopkgtests

2017-07-30 Thread Graham Inggs
Hi Ghislain Can you test your package with mesa-opencl-icd instead of pocl-opencl-icd? This will allow the test suite to run on more architectures than only amd64 and i386. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.

Bug#856055: NetCDF import broken on amd64

2017-08-11 Thread Graham Inggs
Control: tags -1 + pending Hi Timo Thanks for the bug report, test case and patch! I have confirmed the reported behaviour on amd64 and verified that the patch doesn't break i386. I've committed your patch to git [1], slightly reformatted to minimize the diff. Regards Graham [1] https:/

Bug#830681: trilinos-all-dev: Updating binutils breaks trilinos

2016-07-18 Thread Graham Inggs
On 18 July 2016 at 18:53, Nico Schlömer wrote: > @Graham, would you like to upload? Sure, will do tomorrow. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#260511: inventor: ivview/SoXtExaminerViewer popup menu only comes up once

2016-07-22 Thread Graham Inggs
Hi Maintainer This problem should have gone away in 2.1.5-10-17 when we switched from lesstif2 to motif. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainer

Bug#835406: trilinos: FTBFS on 32-bit architectures

2016-08-29 Thread Graham Inggs
bytes in size. This patch changes long to long long in some places (no change for 64-bit architectures), and adds function declarations needed for building on 32-bit architectures. Bug-Debian: https://bugs.debian.org/835406 Author: Graham Inggs Last-Update: 2016-08-28 --- a/packages/kokkos/core/src

Bug#835406: trilinos: FTBFS on 32-bit architectures

2016-08-29 Thread Graham Inggs
On 29 August 2016 at 21:55, Nico Schlömer wrote: > When uploading, we could perhaps also include the point release 12.6.4. > (Current Debian is 12.6.3.) Sure, let's do that. Do you have time now to prepare 12.6.4 for upload? I can rebase and test my patches against that version. Otherwise, if y

Bug#836420: python-getfem++: please depend on python-scipy for autopkgtests

2016-09-02 Thread Graham Inggs
Package: python-getfem++ Version: 5.0+dfsg1-1 Severity: wishlist Hi Anton Please add a dependency to python-getfem++ on python-scipy. It is required by the autopkgtests and probably for proper operation of python-getfem++ as well. --- a/debian/control +++ b/debian/control @@ -77,6 +78,7 @@

Bug#835427: s/XML_NO_ERROR/XML_SUCCESS/

2016-09-02 Thread Graham Inggs
Hi Peter On 2 September 2016 at 23:15, Peter Green wrote: > Unfortunately while that patch fixed the FTBFS in raspbian stretch at the > time the package is now failing for us for a different reason. While I saw > this in raspbian I have no reason to belive it is raspbian specific. > > > In file i

Bug#835411: opensurgsim: FTBFS with eigen3 3.3~beta2-1

2016-09-03 Thread Graham Inggs
With eigen3 including upstream's patch mentioned by Philipp [1], opensurgsim now builds and passes all 12 tests on ppc64el, but fails 1 test on amd64 and 3 tests on arm64. I don't know if more work is needed in the eigen3 patch or in opensurgsim. [1] https://bugs.debian.org/cgi-bin/bugreport.cgi

Bug#836844: eigen3: autopkgtests fail on ppc64el

2016-09-06 Thread Graham Inggs
Source: eigen3 Version: 3.3~beta2-1 Severity: wishlist Hi Maintainer Since eigen3 3.3~beta2-1, its autopkgtests fail on ppc64el in Ubuntu [1]. Tests on other architectures remain successful [2]. I compared passing and failing test results and the only difference I can see is the passing test

Bug#836844: eigen3: autopkgtests fail on ppc64el

2016-09-07 Thread Graham Inggs
Control: tags -1 patch Hi Anton > I think this can be ignored. But the question is interesting, > if it is platform-dependent. I saw the same behaviour on plummer.debian.org, a ppc64el porterbox. For the record, I applied the patch below in Ubuntu and eigen3 migrated. Regards Graham --- a/d

Bug#836983: freecad: autopkgtests fail on ppc64el and s390x

2016-09-07 Thread Graham Inggs
Source: freecad Version: 0.16+dfsg2-1 Severity: wishlist Hi Maintainer In Ubuntu, freecad 0.16+dfsg2-1 has been failing autopkgtests on ppc64el and 390x with the following error: == ERROR: testConversions (UnitTests.UnitBasicCa

Bug#837058: p4est: FTBFS due to test failures

2016-09-10 Thread Graham Inggs
Control: notfixed -1 1.1-3 Control: found -1 1.1-3 There are still two tests that fail intermittently: FAIL: test/p4est_test_loadsave FAIL: test/p8est_test_loadsave I believe upstream are aware of issues with openmpi 2. -- debian-science-maintainers mailing list debian-science-maintainers@lis

Bug#837121: gazebo: please restrict libkido-dev (build-)dependency to architectures where it is available

2016-09-13 Thread Graham Inggs
Control: reopen -1 Hi Maintainer I see you updated gazebo's build-dependencies in 7.3.0+dfsg-5. Please do the same for libgazebo7-dev's binary dependencies, i.e. --- a/debian/control +++ b/debian/control @@ -137,7 +138,7 @@ libignition-math2-dev, libbullet-dev, li

Bug#836130: trilinos: FTBFS without __sync_val_compare_and_swap_8

2016-09-16 Thread Graham Inggs
severity 836130 wishlist retitle 836130 trilinos: FTBFS without __sync_val_compare_and_swap_8 thanks Hi Aaron On 30 August 2016 at 20:18, Aaron M. Ucko wrote: > Source: trilinos > Version: 12.6.4-1 > Severity: serious > Justification: fails to build from source (but built successfully in the pa

Bug#837016: singular: FTBFS: aminclude.am:35: error: DX_COND_doc does not appear in AM_CONDITIONAL version graph

2016-09-28 Thread Graham Inggs
rf-alggeo, Regards Graham Description: Fix FTBFS with recent ax_prog_doxygen.m4 Requires autoconf-archive (>= 20160320), thanks Tobias Frost. Forwarded: no Author: Graham Inggs Last-Update: 2016-09-29 --- a/factory/Makefile.am +++ b/factory/Makefile.am @@ -

Bug#836844: eigen3: autopkgtests fail on ppc64el

2016-09-30 Thread Graham Inggs
Hi Steve On 27 September 2016 at 18:45, Steve Langasek wrote: > The attached patch has been applied in Ubuntu. Please consider including it > in Debian as well. The tests still fail on ppc64el with that patch in place. There might be other commits from upstream that need to be included. Regar

Bug#763909: viewmol: /usr/bin/viewmol missing for most archs

2014-11-03 Thread Graham Inggs
reopen 763909 thanks Hi Andreas Thanks for the upload. Unfortunately it didn't seem to work. :( >From the i386 buildlog, it appears that getmachine runs before dh_quilt_patch, so the patch hasn't been applied yet. I'll see if I can convert the package to source format 3.0 (dquilt) and I should

Bug#763909: viewmol: /usr/bin/viewmol missing for most archs

2014-11-03 Thread Graham Inggs
Hi Andreas I attach a debdiff switching viewmol to source format 3.0 (quilt) and debhelper 9. This does the right thing on the Ubuntu PPA builders, at least for the i386 and amd64 builds I tested. I also attach my debian.tar.xz, as it may be easier to extract the original source tarball followed b

Bug#763909: Bug#767919: unblock: viewmol/2.4.1-21

2014-11-04 Thread Graham Inggs
Hi Andreas So far, I haven't been able to get the package to build at all without switching to source format 3.0. I'll try now to see if I am able to skip the getmachine call. For the record, debian/patches/010_build_scripts.diff already contains a patch to allow it to build on kfreebsd: +c

Bug#763909: Bug#767919: unblock: viewmol/2.4.1-21

2014-11-05 Thread Graham Inggs
Some progress. I pre-applied debian/patches/150-getmachine_multiarch.patch simply by running: $ patch -p 1 -i debian/patches/150-getmachine_multiarch.patch ...and then commented out the line: #150-getmachine_multiarch.patch ..from debian/patches/series. I uploaded this to the Ubuntu PPA b

Bug#763909: Bug#767919: unblock: viewmol/2.4.1-21

2014-11-05 Thread Graham Inggs
] + * Team upload. + * Add debian/gbp.conf + * Add Homepage and Vcs fields + + [ Graham Inggs ] + * Pre-apply debian/patches/150-getmachine_multiarch.patch. + * Update debian/rules: configure during the build-arch target. +Closes: #763909 + + -- Graham Inggs Wed, 05 Nov 2014 11:59:03 +0200

Bug#790196: [Debichem-devel] Please help porting rasmol to latest vte (Was: Bug#790196: rasmol: depends on vte which is deprecated)

2015-07-04 Thread Graham Inggs
Hi Andreas I'll have a look when I get a chance, possibly at debcamp next month. On 3 July 2015 at 21:24, Andreas Tille wrote: > I had a look into the said issue but failed with > > ... > No package 'vte' found > Package vte was not found in the pkg-config search path. > Perhaps you should add t

Bug#850965: freecad: GNOME Software catalog entry missing

2017-08-22 Thread Graham Inggs
On 8 July 2017 at 00:52, wrote: > The issue is still present although the icons and desktop file seems to be > correct. Any ideas? Probably this: https://wiki.debian.org/AppStream/Guidelines#No_symbolic_links Since the AppStream Generator relies on packages' md5sums file to determine the conten

Bug#868922: r-cran-randomfieldsutils: FTBFS: init_RandomFieldsUtils.cc:62:10: error: 'R_NativeArgStyle' does not name a type

2017-09-05 Thread Graham Inggs
Control: tags -1 - buster r-cran-randomfieldsutils 0.3.15-1 builds fine in testing -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#875618: openblas: please enable build on s390x

2017-09-12 Thread Graham Inggs
Source: openblas Version: 0.2.20+ds-1 Severity: wishlist Hi Sébastien From Changelog.txt in OpenBLAS 0.2.20: IBM Z: * New target z13 with BLAS3 optimizations I have just checked, and openblas/0.2.20-3 builds successfully on zelenka.debian.org. Please enable building on s390x. Regards Graham

Bug#875618: closed by Sébastien Villemot (Bug#875618: fixed in openblas 0.2.20+ds-4)

2017-09-19 Thread Graham Inggs
Thanks Sébastien! I'm sorry it turned out not to be as simple as I originally thought. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#876411: admesh: autopkgtests fail since 0.98.3-1 upload

2017-09-21 Thread Graham Inggs
Source: admesh Version: 0.98.3-1 Tags: patch User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu artful autopkgtest Hi Anton ADMesh's autopkgtests have been failing since the 0.98.3-1 upload [1]. Output of the 'regression' test changed because it includes the version. If you are happy wi

Bug#876958: nmu: trilinos_12.10.1-4

2017-09-26 Thread Graham Inggs
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu X-Debbugs-Cc: debian-science-maintainers@lists.alioth.debian.org Dear Release Team Lapack recently switched to multiarch and Trilinos needs to be rebuilt in order to pick up the new location

Bug#876509: deal.ii FTBFS with lapack

2017-09-26 Thread Graham Inggs
Control: reassign -1 src:trilinos 12.10.1-4 Control: affects -1 src:deal.ii Control: block -1 by 876958 Hi Anton On 23 September 2017 at 01:23, Anton Gladky wrote: > deal.ii FTBFS in the sid. Probably due to the new upload of lapack. Yes indeed, thanks for picking this up. Trilinos needs a reb

Bug#881318: dh-r: Please provide a means to update or check Build-Depends

2017-11-10 Thread Graham Inggs
Package: dh-r Severity: wishlist Hi It would be great if there was a way to update or check Build-Depends when updating a package to a new upstream version. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.o

Bug#836983: arm64 too

2017-11-20 Thread Graham Inggs
Hi Frederic > Just for the record, this bug also happens on arm64. > This seems to be a regression. I'm trying to bisect that. Did you ever make any progress with this? Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.ali

Bug#882865: r-cran-coin: autopkgtest failure

2017-11-27 Thread Graham Inggs
Source: r-cran-coin Version: 1.2-1-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer Since the upload of 1.2-1-1, r-cran-coin's autopkgtests have been failing [1]. There is a new test that requires r-cran-libcoin which is not yet packaged. Regards Gr

Bug#883002: r-cran-zelig: autopkgtest failure

2017-11-28 Thread Graham Inggs
Source: r-cran-zelig Version: 5.1.5-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer Since the upload of 5.1.5-1, r-cran-zelig's autopkgtests have been failing [1]. Previous tests failed due to r-cran-zelig not being installable, but otherwise would

Bug#836983: freecad: autopkgtests fail on arm64, ppc64el, s390x

2017-12-07 Thread Graham Inggs
Control: retitle -1 freecad: autopkgtests fail on arm64, ppc64el, s390x Ubuntu have recently enabled autopkgtests on arm64 [1] which confirms the same "Unit overflow in pow()" failure on arm64. [1] http://autopkgtest.ubuntu.com/packages/f/freecad/bionic/arm64 -- debian-science-maintainers ma

Bug#836983: Patch

2017-12-08 Thread Graham Inggs
Hi Frédéric On 7 December 2017 at 19:00, Frédéric Bonnard wrote: > Graham, here is patch attached for the issue. > By default some architectures have "char" being unsigned such as the ones > listed here and others ( https://wiki.debian.org/ArchitectureSpecificsMemo ). > I just forced the sign-nes

Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

2017-12-12 Thread Graham Inggs
Hi Pierre (cc-ing Andreas in case he is not subscribed) On 12 December 2017 at 15:13, Pierre Saramito wrote: > Hi Andreas, > > This problem do neither comes from Rheolef-6.7 nor from CGAL-4.11: > it comes from Boost-1.62 combined with g++ 7.2 in Debian sid and testing. > > The bug has already be

Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

2017-12-12 Thread Graham Inggs
On 12 December 2017 at 21:58, Pierre Saramito wrote: >> I think the thing to do here is reassign this bug to src:boost1.62 and >> mark that it affects src:rheolef. > > Do you known how to do that with the Debian bug system ? You can send mail to cont...@bugs.debian.org to manipulate bugs [1]. In

Bug#884349: primesieve: autopkgtest failure

2017-12-14 Thread Graham Inggs
Source: primesieve Version: 6.2+ds-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Jerome Since the upload of 6.2+ds-1, primesieve's autopkgtests have been failing [1]. Upstream removed the option to run 'primesieve --test' in version 6.0. Regards Graham

Bug#837915: package builds crashing under fakeroot

2016-10-04 Thread Graham Inggs
Control: tags 837915 help Hi! On 25/09/2016 13:21, Michael Banck wrote: as I just diagnosed this for a different package: the problem appears to be that mpirun is run during binary-arch, i.e. under fakeroot. Latest openmpi does not like that apparenlty and crashes. Not sure how to fix it for a

Bug#841885: gerris: autopkgtests fail with openmpi2

2016-10-24 Thread Graham Inggs
Source: gerris Version: 20131206+dfsg-9 Hi Maintainer Since the transition to openmpi2, gerris' autopkgtests have been failing with the following error: orte_ess_init failed --> Returned value A system-required executable either could not be found or was not executable by this user (-126) instea

Bug#841885: gerris: autopkgtests fail with openmpi2

2016-10-25 Thread Graham Inggs
On 24 October 2016 at 21:46, Anton Gladky wrote: > thanks for your fix. I have committed it and it will be fixed by the next > upload. Thanks! There's no hurry for the next upload. In Ubuntu, I'm still seeing autopkgtests fail, but only on s390x, with the following message: The value of the MCA

Bug#841885: gerris: autopkgtests fail with openmpi2

2016-10-25 Thread Graham Inggs
On 25 October 2016 at 17:32, Anton Gladky wrote: > feel free to commit directly to git. Thanks, I will do! When I looked previously, I thought the git hadn't been updated since 2014-03-23: https://anonscm.debian.org/cgit/debian-science/packages/gerris.git But now I see that is the debian-unstab

Bug#841885: gerris: autopkgtests fail with openmpi2

2016-10-26 Thread Graham Inggs
The problem on Ubuntu's s390x autopkgtest runner was solved by putting back: export OMPI_MCA_plm_rsh_agent=/bin/false I have committed the change to git. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/

Bug#842946: rheolef: please build everywhere

2016-11-02 Thread Graham Inggs
Source: rheolef Version: 6.7-1 Severity: wishlist Hi Maintainer Please consider making librheolef1 Architecture: any. In Ubuntu, rheolef builds additionally on arm64 and s390x. It is not a problem if not all architectures build on the buildds (unless they built previously). Regards Graham -

Bug#836844: eigen3: autopkgtests fail on ppc64el

2016-11-13 Thread Graham Inggs
Control: reopen -1 I've just checked eigen3 3.3.0-1 on plummer.debian.org, and it still outputs forceMatrix*axisMatrix: -1 0 0 0 -2 0 0 0 -3 -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinf

meshlab: FTBFS with GCC 6: cannot convert x to y

2016-11-17 Thread Graham Inggs
In addition to Gert Wollny's patch, the attached patch fixes narrowing conversions with GCC 6 on architectures where char is unsigned by default. Copying to debian-science-maintainers list in case someone is interested in rescuing this package. narrowing-conversion.patch Description: application

Bug#811986: qwtplot3d: FTBFS with GCC 6: symbol changes

2016-11-27 Thread Graham Inggs
Control: tags - 1 patch Hi Maintainer The attached patch works for me. Regards Graham --- a/debian/libqwtplot3d-qt4-0v5.symbols +++ b/debian/libqwtplot3d-qt4-0v5.symbols @@ -243,10 +243,10 @@ _ZN5Qwt3D4Axis9setMajorsEi@Base 0.2.7 _ZN5Qwt3D4Axis9setMinorsEi@Base 0.2.7 _ZN5Qwt3D4AxisC1ENS_6T

Bug#845082: (no subject)

2016-11-28 Thread Graham Inggs
On 29 November 2016 at 00:29, Breno Leitao wrote: > We just created a pull request to have this fixed upstream. Thanks! > Should we create a Debian patch also? This bug is tagged 'pending' and there's already a patch in the packaging git [1]. I did notice the patch uses round() while your PR us

Bug#835406: trilinos: FTBFS on 32-bit architectures

2016-12-07 Thread Graham Inggs
Control: tags -1 patch Control: merge -1 836130 I've had another look at this after uploading 12.10.1. Upstream have added the following in packages/kokkos/core/src/Kokkos_Core_fwd.hpp: // // Have assumed a 64bit build (8

Bug#835406: trilinos: FTBFS on 32-bit architectures

2016-12-08 Thread Graham Inggs
Attached is an updated version of kokkos-32-bit.patch against upstream 12.10.1. It turns out that once the templates were fixed, the overloaded function declarations were not needed. Builds and test of Kokkos-only and all Trilinos packages on 64-bit architectures are not affected. On 32-bit archi

Bug#835406: trilinos: FTBFS on 32-bit architectures

2016-12-09 Thread Graham Inggs
On 9 December 2016 at 09:49, Nico Schlömer wrote: > The patch looks really simple. Great! Do you think it'd be worthwhile > updating the PR [1] (or opening a new one)? Perhaps the kokkos devs can > figure out why the remaining tests are failing. No harm in trying, I guess. :) Please update the PR

Bug#847925: maxima-sage: build does not handle multiple LDFLAGS

2016-12-12 Thread Graham Inggs
Source: maxima-sage Version: 5.35.1-1 Hi Maintainer Building maxima-sage with LDFLAGS containing more than one flag results in warnings similar to the following: ; - Loading binary file "binary-ecl/init-cl.fas" ;;; Loading "/<>/src/binary-ecl/init-cl.fas" ; - Providing system maxima /us

Bug#811986: qwtplot3d: diff for NMU version 0.2.7+svn191-10.1

2016-12-25 Thread Graham Inggs
Hi Arto On 23 December 2016 at 14:59, Arto Jantunen wrote: > I've prepared an NMU for qwtplot3d (versioned as 0.2.7+svn191-10.1) and > uploaded it to DELAYED/5. Please feel free to tell me if I > should delay it longer. Thanks for the upload. I'm not the maintainer, but I suggest you remove the

Bug#848770: trilinos: FTBFS: Test failures

2016-12-28 Thread Graham Inggs
Control: tags -1 - pending Control: retitle -1 trilinos: test failure with openmpi 2.0.2~ Control: severity -1 normal The Isorropia, ShyLUCore and Teko tests were disabled in trilinos 12.10.1-2 because they were failing since the recent upload of openmpi 2.0.2~. Downgrading severity, but leaving

Bug#850150: freemat ftbfs with LLVM 3.9

2017-01-04 Thread Graham Inggs
lude/llvm/MC/MCAsmInfo.h:555:58: error: expected unqualified-id before ‘)’ token WinEHEncodingType != WinEH::EncodingType::X86); ^ Regards Graham Description: Fix build failure with default LLVM 3.9 Author: Graham Inggs Last-

Bug#850229: dune-grid: FTBFS (not enough slots available)

2017-01-05 Thread Graham Inggs
Hi On 05/01/2017 12:05, Santiago Vila wrote: Status:FAILED Output: -- There are not enough slots available in the system to satisfy the 2 slots that were requested by the application:

Bug#850229: dune-grid: FTBFS (not enough slots available)

2017-01-10 Thread Graham Inggs
On 5 January 2017 at 13:46, Ansgar Burchardt wrote: > On my laptop with 4 cores + HT (so 8 threads), I see `mpirun` complain > once I start more than 4 processes, i.e. more processes than real > cores. Did you count threads or cores when you tried? I haven't been able to duplicate that behaviour

Bug#850150: freemat ftbfs with LLVM 3.9

2017-01-11 Thread Graham Inggs
Control: tags -1 patch Gianfranco found that in LLVM 3.9, llvm/Target/TargetOptions.h now has: #include "llvm/MC/MCAsmInfo.h" which was not present in LLVM 3.8. I tested the workaround below, which can be used until #850785 is fixed. --- a/libs/libMatC/CJitFuncClang.hpp +++ b/libs/libMatC/CJitF

Bug#851320: trilinos: FTBFS on single-CPU machines (not enough slots available)

2017-01-14 Thread Graham Inggs
One solution here is to add '--oversubscribe' to all the mpirun commands, however it has been pointed out that this will fail if the user tries to use an alternate MPI implementation. See #850229. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http:

Bug#851726: liggghts: FTBFS on single-CPU machines (not enough slots available)

2017-01-18 Thread Graham Inggs
See #850229. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#852283: libopenblas-dev: missing on mips64el

2017-01-22 Thread Graham Inggs
Source: openblas Version: 0.2.19-1 Severity: serious Hi Maintainer Architecture: mips64el was added to libopenblas-base but not libopenblas-dev. Was this an oversight? Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alio

Bug#852296: yade FTBFS on arm64: compiler processes terminated (machine runs out of RAM?)

2017-01-23 Thread Graham Inggs
On 23/01/2017 14:08, Adrian Bunk wrote: This buildd has 6 CPUs, but it has only 8 GB of RAM. From the last changelog entry: * [d763fbf] Set compat level to 10. The switch to debhelper 10 enabled parallel builds. Yade 2017.01a-1 FTBFS on most architectures in Ubuntu. The following changed h

Bug#850965: freecad: GNOME Software catalog entry missing

2017-01-24 Thread Graham Inggs
On 24/01/2017 00:00, asciiw...@seznam.cz wrote: The issue seems to be still present. Please re-open the bug and state what is still needed. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debi

Bug#801117: 4ti2: libzsolve.so is underlinked

2015-10-06 Thread Graham Inggs
td::ostream&, __mpz_struct const*)' ../../../src/zsolve/.libs/libzsolve.so: undefined reference to `operator>>(std::istream&, __mpz_struct*)' Author: Graham Inggs Last-Update: 2015-10-05 --- a/src/zsolve/Makefile.am +++ b/src/zsolve/Makefile.am @@ -91,7 +91,7 @@ # Link in

Bug#805032: Parallel builds FTBFS on amd64 and ppc64el in Ubuntu

2015-11-13 Thread Graham Inggs
Source: yade Version: 1.20.0-5 Severity: wishlist Tags: patch Hi Maintainer I disabled parallel builds of yade for all architectures in Ubuntu, as per the attached patch. It has fixed the FTBFS on amd64 and ppc64el there. Please consider doing the same so that yade may be sync'd automaticall

Re: normaliz_3.0.0+ds-2_amd64.changes REJECTED

2015-11-20 Thread Graham Inggs
On 20/11/2015 10:57, Andreas Tille wrote: On Fri, Nov 20, 2015 at 03:36:31AM +0100, Jerome BENOIT wrote: Just to confirm that the original source (version 3.0.0+ds.orig) material was not touched. I was just building from Git with pristine-tar. The problem is the orig.tar in the archive is

Re: normaliz_3.0.0+ds-2_amd64.changes REJECTED

2015-11-21 Thread Graham Inggs
On 20 November 2015 at 14:06, Jerome BENOIT wrote: > It appears that the faulty one is the one in the archive, if it makes sense > to say so. > For a least two reasons: > 1] ` ./debian/rules get-orig-source ' gives the one in the git; > 2] the one in the archive is certainly derive from the git i

Re: normaliz_3.0.0+ds-2_amd64.changes REJECTED

2015-11-21 Thread Graham Inggs
On 22 November 2015 at 07:04, Jerome BENOIT wrote: > I have just done the dirty manoeuvre and some checks: > it should be ok now. It looks OK to me. Shall I go ahead and upload? -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.de

Bug#806469: Parallel build FTBFS on amd64 in Ubuntu

2015-11-27 Thread Graham Inggs
Source: eigen3 Version: 3.3~alpha1-2 Severity: wishlist Tags: patch Hi Maintainer Similar to #805032 [1], I've had to disable parallel builds in order to get eigen3 to build on amd64 in Ubuntu. Please consider including the following patch along with your next upload so that eigen3 may be automa

Re: normaliz_3.0.0+ds-3_amd64.changes REJECTED

2015-12-03 Thread Graham Inggs
Hi Jerome On 3 December 2015 at 19:53, Jerome BENOIT wrote: > Please let me know what I may do to solve this issue. > Thanks in advance, > Jerome I don't think you need to do anything. Andreas just needs to do regenerate his orig.tar.xz from the pristine-tar branch you fixed recently, or do a

Re: normaliz_3.0.0+ds-3_amd64.changes REJECTED

2015-12-03 Thread Graham Inggs
On 3 December 2015 at 20:36, Jerome BENOIT wrote: > Stricto sensu, it is a Debian release: no need to upload the upstream source > material; > uploading the Debian source material is what is needed here. See: https://wiki.debian.org/SourceOnlyUpload dpkg-buildpackage -S -sa source is diff + d

Bug#809708: suitesparse: please lower libatlas-doc recommends to suggests

2016-01-03 Thread Graham Inggs
Source: suitesparse Version: 1:4.4.5-2 Severity: wishlist Tags: patch Hi Maintainer Please consider lowering libsuitesparse-doc's Recommends on libatlas-doc to a Suggests, as per the attached patch. This will allow the suitesparse package to automatically synchronize into Ubuntu in future. The

Bug#739186: inventor: FTBFS on s390x: error: cast from 'void*' to 'int' loses precision [-fpermissive]

2014-03-29 Thread Graham Inggs
I recently received a notification that inventor also FTBFS on arm64 in Ubuntu Trusty, buildlog [1]. Inventor wasn't built for Ubuntu Saucy as tcsh was not available, buildlog [2]. Could this fix be extended to include __arm64__ as well, please? [1] https://launchpadlibrarian.net/171094762/build

Bug#739186: inventor: FTBFS on s390x: error: cast from 'void*' to 'int' loses precision [-fpermissive]

2014-03-30 Thread Graham Inggs
Patch enabling s390x and aarch64 (arm64): --- inventor-2.1.5-10/debian/patches/endianness.patch 2011-09-25 03:15:31.0 + +++ inventor-2.1.5-10/debian/patches/endianness.patch 2014-03-30 12:05:39.0 +0200 @@ -53,7 +53,7 @@ #endif +/* Added for Debian by Steve M. Robbins */

Bug#739186: inventor: FTBFS on s390x: error: cast from 'void*' to 'int' loses precision [-fpermissive]

2014-03-30 Thread Graham Inggs
On 30 March 2014 12:06, Graham Inggs wrote: > Patch enabling s390x and aarch64 (arm64): > > --- inventor-2.1.5-10/debian/patches/endianness.patch 2011-09-25 > 03:15:31.0 + > +++ inventor-2.1.5-10/debian/patches/endianness.patch 2014-03-30 > 12:05:39.

Bug#885569: suitesparse: libgraphblasdemo underlinked

2017-12-27 Thread Graham Inggs
Source: suitesparse Version: 1:5.1.0-1 Tags: patch Hi Sébastien Suitesparse fails to build in Ubuntu where everything is linked with -Wl,--as-needed by default. [ 50%] Linking C executable simple_demo /usr/bin/cmake -E cmake_link_script CMakeFiles/simple_demo.dir/link.txt --verbose=1 /usr/bin/cc

Accepted artha 1.0.3-3 (source) into unstable

2018-02-18 Thread Graham Inggs
-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 19 Feb 2018 07:14:44 + Source: artha Binary: artha Architecture: source Version: 1.0.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Graham Inggs Description: artha - Handy

Bug#890987: sdformat: autopkgtest failure

2018-02-21 Thread Graham Inggs
Source: sdformat Version: 6.0.0+dfsg-3 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer With the upload of 6.0.0+dfsg-3, sdformat's autopkgtest failed [1] with the following error: autopkgtest [22:16:52]: test build: [--- Package

Bug#891246: ros-metapackages: please adjust dependencies for libgazebo9

2018-02-23 Thread Graham Inggs
Source: ros-metapackages Version: 1.8 Tags: patch Hi Maintainer 9.0.0+dfsg5-2 was recently uploaded to unstable. Please update the dependencies of ros-simulators and ros-simulators-dev for the new gazebo9 packages. I believe the patch below is what is required. Regards Graham @@ -448,7 +448,

  1   2   >