Dear users,
Is there any script available to calculate % occupancy of residues with
respect to time? This in continuation with my previous query on percentage
of protein in contact with membrane??
Kind Regards,
Antara
--
Junior research fellow(project)
Systems biology group
CSIR-Institute of
Hi Antara,
You can also simply calculate the ratio of buried surface area to total
surface area, which you can both get with gmx sasa
Cheers,
Tsjerk
On Thu, May 19, 2016 at 3:10 PM, Sarath Chandra <
sarathchandrada...@gmail.com> wrote:
> You can use g_contacts tool which will give you list of
You can use g_contacts tool which will give you list of residues which are
in contact with the membrane and their frequencies. You might have to write
an overhead script to convert the residues in contact to %Protein in contact
http://www.sciencedirect.com/science/article/pii/S0010465513002464
Dear gromacs users,
I have a peripheral membrane protein which I have simulated using Charmm 36
in a mixed lipids bilayer. I want to calculate the percentage of protein in
contact with membrane wrt time. I already have residue wise distances from
membrane calculated.
Can anyone suggest me how to
