Hi all,
I am using PyMOL 1.7.4 on a HPC cluster (with X11-forwarding). The graphics
card (ATI) of my workstation supports OpenGL 1.4.
I am trying to color an isosurface with a color ramp from a cube file. I use
the following commands:
load PhCH2-2Py2H.xyz
hide everything
show sticks
show spher
Hi Samuel,
What's the data range of the "densf" map?
You can query the [min, max, mean, stdev] with:
print(cmd.get_volume_histogram("densf", 0))
Does the color show up with "ray"? (That is independent of OpenGL capabilities)
Thanks,
Thomas
On 11 Jan 2017, at 16:11, Fux Samuel (ID SIS) wrote:
Sorry to post back in.
As I posted yesterday , I have been trying to get pymol working on a
Macbook Air ( and MacBook Pro since yesterday ) and am now convinced the
X11 apps freezing problem is real and recurs frequently.
While rotating a molecule the X session stops responding , the window clos
Hi Thomas,
thank you for your reply. Please find below the data range of densf:
PyMOL>print(cmd.get_volume_histogram("densf", 0))
[-149.1259765625, 17.788000106811523, -1.1102406978607178, 29.603145599365234]
Best regards
Samuel
--
ETH Zurich, Dr. sc. ETH Samuel Fux
High Performance Computing,