Re: [spctools-discuss] Re: decode and uncompress mzXML 3.1 peaks (zlib) in perl

2010-04-08 Thread Jimmy Eng
click on the source (actually the corresponding revision number) here http://fastpass.svn.sourceforge.net/viewvc/sashimi/trunk/jrap/sax2/src/org/systemsbiology/jrap/ On Thu, Apr 8, 2010 at 11:47 AM, jcmatese wrote: > Afraid that link does not work for me? > > -- > You received this message becau

[spctools-discuss] Re: decode and uncompress mzXML 3.1 peaks (zlib) in perl

2010-04-08 Thread jcmatese
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Re: [spctools-discuss] decode and uncompress mzXML 3.1 peaks (zlib) in perl

2010-04-08 Thread Brian Pratt
Actually you decode the base64 to binary data, then decompress compressedLen bytes of that data to get the binary peaks info you're already used to dealing with. For an example have a look at * http://sashimi.sourceforge.net/trunk/jrap/sax2/src/org/systemsbiology/jrap/SAX2ScanHandler.java * Not p

[spctools-discuss] decode and uncompress mzXML 3.1 peaks (zlib) in perl

2010-04-08 Thread jcmatese
Hi All, Is there a documentation or recipe for decoding zlib compressed peaks for mxXML version 3.1? I had been using a variation of a perl recipe provided by Zack Booth Simpson and John Prince, documented here: http://sashimi.sourceforge.net/schema_revision/mzXML_2.1/Doc/mzXML_2.1_tutorial.pdf