[base] BASE2: cannot create new Experiment with existing raw data
Hi, I have just installed BASE2 and I have got as far as importing a raw data set with Agilent data. I would now like to try out some of the analysis plugins which apparently means I have to create a new experiment item first. When I try to do this I get an error after attaching my raw data to it: Invalid data On page /base2/views/experiments/index.jsp No raw data has been added to the raw bioassay: Raw bioassay[id=1; name=test raw bioassay] I have tried this several times and it fails consistently. I have double checked and there definitely is raw data attached to the raw bioassay -- I can see them in the raw bioassay view. Has anyone had a similar problem? Is this a bug or am I just doing something wrong here? Thanks Micha == Dr Micha M Bayer Bioinformatics Specialist Genetics Programme The Scottish Crop Research Institute Invergowrie Dundee DD2 5DA Scotland, UK Telephone +44(0)1382 562731 ext. 2309 Fax +44(0)1382 562426 http://www.scri.sari.ac.uk/MichaBayer.htm = _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ DISCLAIMER: This email is from the Scottish Crop Research Institute, but the views expressed by the sender are not necessarily the views of SCRI and its subsidiaries. This email and any files transmitted with it are confidential to the intended recipient at the e-mail address to which it has been addressed. It may not be disclosed or used by any other than that addressee. If you are not the intended recipient you are requested to preserve this confidentiality and you must not use, disclose, copy, print or rely on this e-mail in any way. Please notify [EMAIL PROTECTED] quoting the name of the sender and delete the email from your system. Although SCRI has taken reasonable precautions to ensure no viruses are present in this email, neither the Institute nor the sender accepts any responsibility for any viruses, and it is your responsibility to scan the email and the attachments (if any). - Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
[base] Changing CDF/CEL association
Hi, Using BASE2 on (on the demo site) I accidentally associated the wrong CDF file with the CEL file. It looks like you should be able to change 'Array design' in 'Raw bioassay' but if you 'Edit' there doesn't appear to be an option to change it. Is there a work around or do I have to delete the raw bioassay and start again? Or is this a feature that could be added to the list please? Thanks for any help, Steve -- Medical Sciences Division Weatherall Institute of Molecular Medicine/Sir William Dunn School Oxford University - Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
Re: [base] Changing CDF/CEL association
Hi, Since you are running the demo installation, your privileges may have been limited. I can unlink affy array design/ raw files association on my installation. Note: I have admin rights. Regards, Dominic -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Steve Taylor Sent: 29 September 2006 11:25 To: BASEDBUSERS Subject: [base] Changing CDF/CEL association Hi, Using BASE2 on (on the demo site) I accidentally associated the wrong CDF file with the CEL file. It looks like you should be able to change 'Array design' in 'Raw bioassay' but if you 'Edit' there doesn't appear to be an option to change it. Is there a work around or do I have to delete the raw bioassay and start again? Or is this a feature that could be added to the list please? Thanks for any help, Steve -- Medical Sciences Division Weatherall Institute of Molecular Medicine/Sir William Dunn School Oxford University - Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED] - Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]