Re: [Bioc-devel] Fixed error on gemma.R

2024-04-26 Thread Kern, Lori via Bioc-devel 
You're package will still be included in the release.  We stress this deadline 
as packages that need bug corrections after the release would need to push to 
both branches. And any changes made last minute are not guaranteed to have a 
build report before we branch.  Please keep an eye on the package to ensure the 
error resolves quickly.

Cheers

Get Outlook for iOS

From: Bioc-devel  on behalf of Ogan Mancarci 

Sent: Friday, April 26, 2024 5:17:42 PM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] Fixed error on gemma.R

Hi,

I am the maintainer of gemma.R

 package.
The latest test

 came up
with an error due to a sporadic server issue. I have included a fix in a
last push to try to address that but I am unsure if tests will be run again
before the deadline today

Cheers,
Ogan

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[Bioc-devel] Fixed error on gemma.R

2024-04-26 Thread Ogan Mancarci 
Hi,

I am the maintainer of gemma.R
 package.
The latest test
 came up
with an error due to a sporadic server issue. I have included a fix in a
last push to try to address that but I am unsure if tests will be run again
before the deadline today

Cheers,
Ogan

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Re: [Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed

2024-04-26 Thread Kern, Lori via Bioc-devel 
We will un-deprecate once the package is building and checking cleanly.   We 
will look at today's build report when it is posted.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Oriol Senan 
Campos 
Sent: Friday, April 26, 2024 2:54 AM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] cliqueMS request for undeprecation as all errors have 
been fixed

Dear Bioconductor Core Team,

I am the maintainer of cliqueMS. The package was flagged to deprecation
but I have been able to fix the error that was causing the failure in
the checks. I just had to remove a dependency that is no longer on CRAN
and replace for a package available there. After checks and passing all
the test I could find another dependency that does a similar
calculation. I already pushed to Bioc devel (3.18 I cannot make any more
commits). So please remove cliqueMS from the list of deprecated packages
for 3.19. Tomorrow we will see a new build and I expect all OS and hosts
to pass.

Kind Regards,
Oriol Senan

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Re: [Bioc-devel] Error on macOS (merida1)

2024-04-26 Thread Kern, Lori via Bioc-devel 
Yes a package in submission should depend on R 4.4.0.  Merida1 was accidently 
started for the package review process but should not have been included yet.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Carlotta 
Meyring 
Sent: Friday, April 26, 2024 3:37 AM
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] Error on macOS (merida1)

Dear Bioconductor Team,


I pushed my updates for the package zitools a few days ago. However, there is 
an error on macOS merida1: ERROR: this R is version 4.3.3, package 'zitools' 
requires R >= 4.4.0.


On Linux (nebbiolo1) is everything fine. Is that a problem? Because as far as I 
understood, the package should be dependent on R-4.4.

Thanks in advance,
Carlotta




Carlotta Meyring
Methods of Modelling and Bioinformatics in Systems Biomedicine (MSB)
Institute of Medical Biometry and Statistics (IMBI)
Faculty of Medicine and Medical Center - University of Freiburg

Postal Address: Stefan-Meier-Str. 26, 79104 Freiburg
Mail: carlotta.meyr...@uniklinik-freiburg.de
Phone: +49 761 270 83805
Homepage: 
http://secure-web.cisco.com/1pfXSDYRNGtlPft0VUNHWCrSQI4uGEi3JdavTMpos07xuzJE5-RsEZVSBCux1LCAmJslAlgoNPfpAb7SInYhepvg8eiGL7EHPsg2qwFhxi8IG_zImJJjnnEKjNA9GpyIEdOKukD-XxwgA5B1iRuTBBC0TrRdwVAzBHpRTPagOfg9WuWCwnIiiFqDFOlSv8De7L49A67HbqBEKVPh3Q_WIHhPrYSYQ4gEiotN6Y8MAZI9_QrFgFml_ylc8q6kTWxz-c0zznOD_YOSiqE9ym4Lmv5aVRn30qAv87bfuzDR-F_LFJjUUA-ldMbCaFwdu4KFU/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi%2Fmsb.html


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[Bioc-devel] Error on macOS (merida1)

2024-04-26 Thread Carlotta Meyring 
Dear Bioconductor Team,


I pushed my updates for the package zitools a few days ago. However, there is 
an error on macOS merida1: ERROR: this R is version 4.3.3, package 'zitools' 
requires R >= 4.4.0.


On Linux (nebbiolo1) is everything fine. Is that a problem? Because as far as I 
understood, the package should be dependent on R-4.4.

Thanks in advance,
Carlotta




Carlotta Meyring
Methods of Modelling and Bioinformatics in Systems Biomedicine (MSB)
Institute of Medical Biometry and Statistics (IMBI)
Faculty of Medicine and Medical Center - University of Freiburg

Postal Address: Stefan-Meier-Str. 26, 79104 Freiburg
Mail: carlotta.meyr...@uniklinik-freiburg.de
Phone: +49 761 270 83805
Homepage: 
www.uniklinik-freiburg.de/imbi/msb.html


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