Re: [Bioc-devel] ClusterSignificance version number

[Jason Serviss]

Lori,

Thanks for your quick response! Ok, it was the fact that 
https://git.bioconductor.org/packages/ClusterSignificance is devel by default 
that was not clear to me (potentially obvious in hindsight). Thanks for 
clearing this up!

Kind Regards,
Jason

On 10 Jul 2018, at 11:41, Shepherd, Lori 
mailto:lori.sheph...@roswellpark.org>> wrote:

There is no problem with the versions.

The master branch is the devel branch -  and the DESCRIPTION on our git server 
is 1.9.0
The RELEASE_3_7 branch is the release 3.7 branch - and the DESCRIPTION on our 
git serve is 1.8.0

When you clone the repository git clone 
https://git.bioconductor.org/packages/ClusterSignificance  By default you are 
in the master (devel) branch.  So it would show the description as 1.9.0  
unless you checkout the release branch. See:
http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/


Your downloaded tar was from release (hence the 3.7/bioc  and the 1.8.0 version)
https://master.bioconductor.org/packages/3.7/bioc/src/contrib/ClusterSignificance_1.8.0.tar.gz


The devel tar that shows 1.9.0 would  be from 3.8
https://master.bioconductor.org/packages/3.8/bioc/src/contrib/ClusterSignificance_1.9.0.tar.gz




Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263

From: Bioc-devel 
mailto:bioc-devel-boun...@r-project.org>> on 
behalf of Jason Serviss mailto:jason.serv...@ki.se>>
Sent: Tuesday, July 10, 2018 5:06:59 AM
To: bioc-devel
Subject: [Bioc-devel] ClusterSignificance version number

Hello,

I maintain the ClusterSignificance package which recently encountered a build 
fail. While investigating the problem I noticed that it would seem that there 
is an issue with the version numbering (quite possibly my fault). Both the 
master and RELEASE_3_7 branches were bumped to version 1.9.0 on April 30th 
although it would seem, per Bioconductor convention, that the RELEASE_3_7 
branch should have version 1.8.0. Cloning from the git repo (git clone 
https://git.bioconductor.org/packages/ClusterSignificance), the DESCRIPTION 
file shows version 1.9.0 but if I download the Source Package 
(ClusterSignificance_1.8.0.tar.gz<https://master.bioconductor.org/packages/3.7/bioc/src/contrib/ClusterSignificance_1.8.0.tar.gz>)
 version 1.8.0 is listed in the DESCRIPTION file. Could someone from 
Bioconductor please have a look at this and let me know if/what steps I need to 
take to fix this or if there is just some sort of misunderstanding on my part?

Kind Regards,
Jason Serviss


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[Bioc-devel] ClusterSignificance version number

[Jason Serviss]

Hello,

I maintain the ClusterSignificance package which recently encountered a build 
fail. While investigating the problem I noticed that it would seem that there 
is an issue with the version numbering (quite possibly my fault). Both the 
master and RELEASE_3_7 branches were bumped to version 1.9.0 on April 30th 
although it would seem, per Bioconductor convention, that the RELEASE_3_7 
branch should have version 1.8.0. Cloning from the git repo (git clone 
https://git.bioconductor.org/packages/ClusterSignificance), the DESCRIPTION 
file shows version 1.9.0 but if I download the Source Package 
(ClusterSignificance_1.8.0.tar.gz)
 version 1.8.0 is listed in the DESCRIPTION file. Could someone from 
Bioconductor please have a look at this and let me know if/what steps I need to 
take to fix this or if there is just some sort of misunderstanding on my part?

Kind Regards,
Jason Serviss


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