Re: [Bioc-devel] celaya2 and merida2 are running different versions of R
Dear Lori, I have just seen that you have installed ROOT on 'celaya2', and now the status of xps is 'OK'. Thank you for the installation. Best regards, Christian On 06.04.19 14:12, Shepherd, Lori wrote: I believe ROOT was installed yesterday. It should clear up on the build system over the next two builds Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of cstrato Sent: Saturday, April 6, 2019 7:23:39 AM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] celaya2 and merida2 are running different versions of R Dear Lori, Since you have just mentioned that users need to satisfy 'celaya2' since 'merida2' will be taken offline shortly, may I remind you that 'xps' is still missing the ROOT framework on 'celaya2', see: https://stat.ethz.ch/pipermail/bioc-devel/2019-February/014670.html Best regards, Christian ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] celaya2 and merida2 are running different versions of R
Dear Lori, Thank you for this information. Best regards, Christian On 06.04.19 14:12, Shepherd, Lori wrote: I believe ROOT was installed yesterday. It should clear up on the build system over the next two builds Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of cstrato Sent: Saturday, April 6, 2019 7:23:39 AM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] celaya2 and merida2 are running different versions of R Dear Lori, Since you have just mentioned that users need to satisfy 'celaya2' since 'merida2' will be taken offline shortly, may I remind you that 'xps' is still missing the ROOT framework on 'celaya2', see: https://stat.ethz.ch/pipermail/bioc-devel/2019-February/014670.html Best regards, Christian ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] celaya2 and merida2 are running different versions of R
I believe ROOT was installed yesterday. It should clear up on the build system over the next two builds Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of cstrato Sent: Saturday, April 6, 2019 7:23:39 AM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] celaya2 and merida2 are running different versions of R Dear Lori, Since you have just mentioned that users need to satisfy 'celaya2' since 'merida2' will be taken offline shortly, may I remind you that 'xps' is still missing the ROOT framework on 'celaya2', see: https://stat.ethz.ch/pipermail/bioc-devel/2019-February/014670.html Best regards, Christian ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] celaya2 and merida2 are running different versions of R
Dear Lori, Since you have just mentioned that users need to satisfy 'celaya2' since 'merida2' will be taken offline shortly, may I remind you that 'xps' is still missing the ROOT framework on 'celaya2', see: https://stat.ethz.ch/pipermail/bioc-devel/2019-February/014670.html Best regards, Christian ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] celaya2 and merida2 are running different versions of R
merida2 is a legacy build machine that will be taken offline shortly. Please satisfy celaya2. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Samuela Pollack Sent: Friday, April 5, 2019 12:54:42 PM To: Bioc-devel; r...@jimmy.harvard.edu Subject: [Bioc-devel] celaya2 and merida2 are running different versions of R Dear Bioconductor, With your very helpful assistance, for which we are extremely grateful, we have succeeded in removing the errors from the devel branch of our bumphunter package. More or less, anyway. We are passing on celaya2 and failing on merida2. The reason is that celaya2 is running R-devel r76245 and merida2 is running R-devel r75683. The random number generator changed between r75683 and r76245. This is a problem because our unit tests compare the output of bumphunter to a stashed .rda file. So there is no way the .rda file can make both r75683 and r76245 happy. Will this cause any problems for the package's continuation in Bioconductor 3.9? It seems probable but not guaranteed that R 3.6 will ultimately use the new RNG. thanks, - Sam ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] celaya2 and merida2 are running different versions of R
Dear Bioconductor, With your very helpful assistance, for which we are extremely grateful, we have succeeded in removing the errors from the devel branch of our bumphunter package. More or less, anyway. We are passing on celaya2 and failing on merida2. The reason is that celaya2 is running R-devel r76245 and merida2 is running R-devel r75683. The random number generator changed between r75683 and r76245. This is a problem because our unit tests compare the output of bumphunter to a stashed .rda file. So there is no way the .rda file can make both r75683 and r76245 happy. Will this cause any problems for the package's continuation in Bioconductor 3.9? It seems probable but not guaranteed that R 3.6 will ultimately use the new RNG. thanks, - Sam ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
