Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
On 01/06/2017 06:27 AM, Anand MT wrote:
Hi Vladimir,
Thanks for suggestion. I will try this and see if it helps.
yes hover over the red dot at the end of each line and it says that the
build version (x.y.4) is lower than the published version (x.y.31) --
the elements of the version number are treated as integers, and 4 is
less than 31 as Vladimir indicates.
Also, what is the underlying reason for the file that is sometimes not
found? It looks like something left over from some attempt at parallel
evaluation?
Martin
From: Vladimir Kiselev
Sent: 06 January 2017 13:24:49
To: Anand MT; Vincent Carey
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
Maybe 1.0.4 is smaller than 1.0.30? Try to change to 1.0.31.
On Fri, 6 Jan 2017, 05:32 Anand MT,
mailto:anand...@hotmail.com>> wrote:
Hi Vincent,
Thanks for reply. I swear this was OK till yesterday for updated version! This "file
not found" issue often occurs but it resolves by itself during next builds. Anyways,
even when everything was OK, package didn't update to newer version.
From: Vincent Carey
mailto:st...@channing.harvard.edu>>
Sent: 06 January 2017 08:27:01
To: Anand MT
Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>
Subject: Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
On Thu, Jan 5, 2017 at 9:33 PM, Anand MT
mailto:anand...@hotmail.com><mailto:anand...@hotmail.com<mailto:anand...@hotmail.com>>>
wrote:
Hi,
I recently pushed few bug fixes and removed some dependency packages which were
no longer required. I did this a week ago and updated version to 1.0.4 from
1.0.30.
Build reports are OK for updated version.
http://bioconductor.org/checkResults/release/bioc-LATEST/maftools/
Hi -- there is an error for linux build on that link.
However, release site is still at older 1.0.30. How to proceed now ?
Probably have to fix the build error --
Done !
Quitting from lines 152-153 (maftools.Rmd)
Error: processing vignette 'maftools.Rmd' failed with diagnostics:
file not found: /dev/shm/file6fd4ebc7d82
Execution halted
Thank you.
-Anand
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Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
Maybe 1.0.4 is smaller than 1.0.30? Try to change to 1.0.31. On Fri, 6 Jan 2017, 05:32 Anand MT, wrote: > Hi Vincent, > > Thanks for reply. I swear this was OK till yesterday for updated version! > This "file not found" issue often occurs but it resolves by itself during > next builds. Anyways, even when everything was OK, package didn't update to > newer version. > > > > > From: Vincent Carey > Sent: 06 January 2017 08:27:01 > To: Anand MT > Cc: bioc-devel@r-project.org > Subject: Re: [Bioc-devel] maftools package not updated after pushing bug > fixes. > > > > On Thu, Jan 5, 2017 at 9:33 PM, Anand MT anand...@hotmail.com>> wrote: > Hi, > > > I recently pushed few bug fixes and removed some dependency packages which > were no longer required. I did this a week ago and updated version to 1.0.4 > from 1.0.30. > > Build reports are OK for updated version. > > http://bioconductor.org/checkResults/release/bioc-LATEST/maftools/ > > Hi -- there is an error for linux build on that link. > > > > > However, release site is still at older 1.0.30. How to proceed now ? > > Probably have to fix the build error -- > > > Done ! > Quitting from lines 152-153 (maftools.Rmd) > Error: processing vignette 'maftools.Rmd' failed with diagnostics: > file not found: /dev/shm/file6fd4ebc7d82 > > Execution halted > > > > > Thank you. > > -Anand > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- http://genat.uk [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
On Thu, Jan 5, 2017 at 9:33 PM, Anand MT wrote: > Hi, > > > I recently pushed few bug fixes and removed some dependency packages which > were no longer required. I did this a week ago and updated version to 1.0.4 > from 1.0.30. > > Build reports are OK for updated version. > > http://bioconductor.org/checkResults/release/bioc-LATEST/maftools/ Hi -- there is an error for linux build on that link. > > > > However, release site is still at older 1.0.30. How to proceed now ? > Probably have to fix the build error -- Done ! Quitting from lines 152-153 (maftools.Rmd) Error: processing vignette 'maftools.Rmd' failed with diagnostics: file not found: /dev/shm/file6fd4ebc7d82 Execution halted > > > Thank you. > > -Anand > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
