Re: [Biojava-l] binary files in CVS
> "Matthew" == Matthew Pocock <[EMAIL PROTECTED]> writes: [...] Matthew> Hum. Doing this on my biojava-live doesn't seem to have Matthew> solved the problem. Is this Keith's stuff? Some tests Matthew> seem to work, others don't. Here is some example output. Yep, I put those in. I'm a bit baffled as I can't reproduce the problem on the original checked-in files or a fresh checkout (taken as I send this). The files are zipped because some are large and an initial CVS checkout is already very painful for those of us on dialup because of the massive blast output files in demos/files. If we can't solve the problem we can always unzip - but I'd prefer not to. Let me know if the CVS tweak doesn't help... Keith -- -= Keith James - [EMAIL PROTECTED] - http://www.sanger.ac.uk/Users/kdj =- Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Cambridge, UK ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
[Biojava-l] Signing the Biojava jar file
Hi, I didn't get any response to my email last week about signing the Biojava jar file. Has anybody successfully signed and deployed (as trusted apps/applets) the biojava-1.20.jar or biojava-1.21.jar files? I am unable to do this. I have managed to sign and deploy biojava-1.11.jar The error I am getting is Missing signed entry in resource biojava.jar: JNLPException[category: Download Error : Exception: null : LaunchDesc: null ] at com.sun.javaws.security.SigningInfo.checkSigning(Unknown Source) at com.sun.javaws.cache.DownloadProtocol$RetrieveAction.actionDownload(Unkn own Source) at com.sun.javaws.cache.DownloadProtocol.doDownload(Unknown Source) at com.sun.javaws.cache.DownloadProtocol.getResource(Unknown Source) at com.sun.javaws.LaunchDownload.downloadJarFiles(Unknown Source) at com.sun.javaws.LaunchDownload.downloadEagerorAll(Unknown Source) at com.sun.javaws.Launcher.downloadResources(Unknown Source) at com.sun.javaws.Launcher.handleApplicationDesc(Unknown Source) at com.sun.javaws.Launcher.handleLaunchFile(Unknown Source) at com.sun.javaws.Launcher.run(Unknown Source) at java.lang.Thread.run(Thread.java:536) Thanks for your help. Cheers, Martin. ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
RE: [Biojava-l] Signing the Biojava jar file
I can't help unfortunately as my knowledge of jarsign etc is limited but I would like to reiterate that if Biojava is to be used seriously in distributed webstart type applications it needs signing. Possibly this should be done at the source by ant or something using an 'official' certificate thus preventing you having to trust potentially several distributers of the biojava jar. > -Original Message- > From: Martin Moorhead [mailto:[EMAIL PROTECTED]] > Sent: Friday, 17 May 2002 4:22 a.m. > To: [EMAIL PROTECTED] > Subject: [Biojava-l] Signing the Biojava jar file > > > Hi, > > I didn't get any response to my email last week about signing > the Biojava jar file. > > Has anybody successfully signed and deployed (as trusted > apps/applets) the biojava-1.20.jar or biojava-1.21.jar files? > I am unable to do this. > > I have managed to sign and deploy biojava-1.11.jar > > The error I am getting is > > Missing signed entry in resource biojava.jar: > > JNLPException[category: Download Error : Exception: null : > LaunchDesc: null ] > at > com.sun.javaws.security.SigningInfo.checkSigning(Unknown > Source) > at > com.sun.javaws.cache.DownloadProtocol$RetrieveAction.actionDow > nload(Unkn > own Source) > at > com.sun.javaws.cache.DownloadProtocol.doDownload(Unknown > Source) > at > com.sun.javaws.cache.DownloadProtocol.getResource(Unknown > Source) > at com.sun.javaws.LaunchDownload.downloadJarFiles(Unknown > Source) > at > com.sun.javaws.LaunchDownload.downloadEagerorAll(Unknown > Source) > at > com.sun.javaws.Launcher.downloadResources(Unknown Source) > at com.sun.javaws.Launcher.handleApplicationDesc(Unknown > Source) > at > com.sun.javaws.Launcher.handleLaunchFile(Unknown Source) > at com.sun.javaws.Launcher.run(Unknown Source) > at java.lang.Thread.run(Thread.java:536) > > Thanks for your help. > > Cheers, Martin. > > ___ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > === Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. === ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
[Biojava-l] MY INHERITANCE
Date:May 16,2002. Email:[EMAIL PROTECTED] Dear Sir, I am Mr.Eduado de Mello, one of the Principal Commanders of the Union for the Total Independence of Angola,UNITA.Well needless telling a very long story here for our story is indeed interwoven with the history of the world and the liberation struggle in the Southern African region of the African continent. The bubble burst just about some weeks ago today when my supreme commander, the late Dr.Jonas Savimbi was killed in an encounter with the government forces of the MPLA government of my country.The rest is now history but suffice it to say that I am tired of the unfortunate role of waging a war against my fatherland.I have therefore decided to pull out my troupes from the bush even if the other field commanders decide otherwise am therefore poised to effect a new beginning in my life and I have decided to make South Africa my new home at least for the interim period until I am sufficiently sure that I would be welcome home whole heartedly by the MPLA government in Luanda the capital of Angola. Needles to say I was the single most important commander who was very close to the late supreme commander; Dr.Jonas Savimbi.Indeed because I am a brother to one of his wives,he confided in me a great deal.The result of such trust is my reason for contacting you I was the commander whom he sent to deposit the sum of Thirty two million USD ($32million) with a security/finance company in South Africa.This was immediately after the events of September 11,2001 in the United States of America.Indeed it had become increasingly difficult to move large volumes of money around the world particularly for a liberation movement like UNITA hence the recourse to keeping the money with the security company in South Africa. I have decided to inherit this money which was taken out and deposited with the said security/finance company as cash in Hundred dollar denominations.The money is kept in my signature and would have been used in the purchase of arms and ammunition for the purposes of continuing the civil war in Angola.The supreme commander is dead and as already stated I have decided to quite the whole thing and this is without regard to the fact that other commanders may wish to continue ! I want to cooperate with you in my decision to inherit the $32million.I am still in the bush here but I have been able to establish contact with the company in South Africa to the effect that I would soon come to take possession of the money that I kept with them. Note also that I deposited the money as a foreign national who is the head of a Mining company in Angola (Never as a commander of UNITA). If you are able to cooperate with me over this am willing to give you 20% of the $32million.Please come back to me through email: [EMAIL PROTECTED] security/finance company is standing by to receive my instructions on this and I will link you up with them as soon as you are ready to take possession of the $32million. Finally you are to note that in you reply, you are to state your residential or company address and if possible send a copy of your international passport so as to assure me that my money is safe in your hands. Yours truly, Eduado de Mello ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
[Biojava-l] ProteinTools.getAlphabet
Hi - The ProteinTools.getAlphabet() method returns an alphabet of size 21? Containing a symbol called SEC I am assuming that this is Selenocysteine but this generally isn't considerd to be part of the standard alphabet and caused a bit of a surprise when I saw it. Should there not be a specialized method to retreive this extended amino acid alphabet (similar to the one used to get the amino acid alphabet including the termination codons)? - Mark Mark Schreiber Bioinformatics AgResearch Invermay PO Box 50034 Mosgiel New Zealand PH: +64 3 489 9175 FAX: +64 3 489 3739 === Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. === ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
