Re: [caret-users] ima images
Hi Tim, I was unable to use AFNI's to3d. Is there any way I can convert them in Caret or compile them somehow? What is a FSL in Caret? Thank you, Matthew From: caret-users-boun...@brainvis.wustl.edu [caret-users-boun...@brainvis.wustl.edu] on behalf of Donna Dierker [do...@brainvis.wustl.edu] Sent: Friday, March 09, 2012 12:10 PM To: Caret, SureFit, and SuMS software users Subject: Re: [caret-users] ima images Try something like AFNI's to3d. On Mar 9, 2012, at 11:04 AM, Timothy Coalson wrote: I believe .ima is an extension used for dicom data, try a dicom to nifti converter such as dinifti or dcm2nii (part of mricron). Tim On Fri, Mar 9, 2012 at 9:09 AM, Maestri, Matthew mmaes...@georgiahealth.edu wrote: Hi Donna, Is it possible for me to open ima images in Caret? If not, is it possible for me to convert the ima images into a Caret friendly image? If so, how would I got about doing this? Thanks, Matthew ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
Re: [caret-users] ima images
FSL is another software package for viewing and manipulating MRI images, etc, which is entirely separate from Caret: http://www.fmrib.ox.ac.uk/fsl/ to3d's help suggests that it should understand .ima, but it doesn't seem to give much detail on how to use it: * Siemens .ima image files can now be read. The program will detect if byte-swapping is needed on these images, and can also set voxel grid sizes and orientations (correctly, I hope). Did you try dinifti or dcm2nii? I know at least one of them understood .ima, but I can't remember which. http://cbi.nyu.edu/software/dinifti.php http://www.cabiatl.com/mricro/mricron/dcm2nii.html If all that fails, you may be able to run it through dcm_to_4dfp and nifti_4dfp from the 4dfp suite, but that will probably involve building it from source unless you already have it installed. Tim On Mon, Mar 12, 2012 at 2:01 PM, Maestri, Matthew mmaes...@georgiahealth.edu wrote: Hi Tim, I was unable to use AFNI's to3d. Is there any way I can convert them in Caret or compile them somehow? What is a FSL in Caret? Thank you, Matthew From: caret-users-boun...@brainvis.wustl.edu [ caret-users-boun...@brainvis.wustl.edu] on behalf of Donna Dierker [ do...@brainvis.wustl.edu] Sent: Friday, March 09, 2012 12:10 PM To: Caret, SureFit, and SuMS software users Subject: Re: [caret-users] ima images Try something like AFNI's to3d. On Mar 9, 2012, at 11:04 AM, Timothy Coalson wrote: I believe .ima is an extension used for dicom data, try a dicom to nifti converter such as dinifti or dcm2nii (part of mricron). Tim On Fri, Mar 9, 2012 at 9:09 AM, Maestri, Matthew mmaes...@georgiahealth.edu wrote: Hi Donna, Is it possible for me to open ima images in Caret? If not, is it possible for me to convert the ima images into a Caret friendly image? If so, how would I got about doing this? Thanks, Matthew ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
[caret-users] ima images
Hi Donna, Is it possible for me to open ima images in Caret? If not, is it possible for me to convert the ima images into a Caret friendly image? If so, how would I got about doing this? Thanks, Matthew ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
Re: [caret-users] ima images
I believe .ima is an extension used for dicom data, try a dicom to nifti converter such as dinifti or dcm2nii (part of mricron). Tim On Fri, Mar 9, 2012 at 9:09 AM, Maestri, Matthew mmaes...@georgiahealth.edu wrote: Hi Donna, Is it possible for me to open ima images in Caret? If not, is it possible for me to convert the ima images into a Caret friendly image? If so, how would I got about doing this? Thanks, Matthew ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
Re: [caret-users] ima images
Try something like AFNI's to3d. On Mar 9, 2012, at 11:04 AM, Timothy Coalson wrote: I believe .ima is an extension used for dicom data, try a dicom to nifti converter such as dinifti or dcm2nii (part of mricron). Tim On Fri, Mar 9, 2012 at 9:09 AM, Maestri, Matthew mmaes...@georgiahealth.edu wrote: Hi Donna, Is it possible for me to open ima images in Caret? If not, is it possible for me to convert the ima images into a Caret friendly image? If so, how would I got about doing this? Thanks, Matthew ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
