Re: [ccp4bb] Protocol for bacmid transformation in E.coli

2020-07-18 Thread Artem Evdokimov
Yes

It requires electroporation and very careful handling of the bacmid. Other
than that it is a fairly simple process.

Here is an example reference:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5067234/

Artem


On Sat, Jul 18, 2020, 9:12 PM Digant Nayak  wrote:

> Dear all,
>
> Sorry for the off topic question, but i assure you that the long term
> output of the project has structural biology application. I want to
> transform a bacmid into E.coli cell and I was intrigued to find that there
> is no protocol for this available on the internet (i would really
> appreciate it if somebody proves me wrong and directs me to a link). Is it
> similar to transforming a plasmid in E.coli? I would really like to hear
> your experiences on this topic.
>
> Thanks,
> Digant
>
>
>
>
> --
>
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[ccp4bb] Protocol for bacmid transformation in E.coli

2020-07-18 Thread Digant Nayak
Dear all,

Sorry for the off topic question, but i assure you that the long term
output of the project has structural biology application. I want to
transform a bacmid into E.coli cell and I was intrigued to find that there
is no protocol for this available on the internet (i would really
appreciate it if somebody proves me wrong and directs me to a link). Is it
similar to transforming a plasmid in E.coli? I would really like to hear
your experiences on this topic.

Thanks,
Digant



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Re: [ccp4bb] Accessing full list of programs in CCP4I2

2020-07-18 Thread Jon Cooper
I re-read this thread because I was confused by it, esp. the discussion on 
having to use the command line to run old programs! I assumed therefore that 
the old ccp4i gui had finally disappeared. Anyhow, I just installed 7.1 and 
it's still there, complete with the Program List dropdown! In case anyone else 
(who is yet to upgrade) was confused, there seems to be no need to panic, just 
yet!!

Best wishes, Jon Cooper,
E-mail: jon.b.coo...@protonmail.com



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[ccp4bb] Sad News

2020-07-18 Thread Sweet, Robert
I'm writing to acknowledge the passing of Ward Smith during the weekend of 5 
July. Ward got his PhD with Martha Ludwig at U. of Michigan, and then came to 
UCLA in 1977 to join Dave Eisenberg’s group as a postdoc. During the course of 
things, he met Cheryl Janson, a Paul Boyer postdoc, and they were married in 
1980.  During his time at UCLA Ward became expert in operation of the 
Xuong/Hamlin/Nielsen multi-wire system at UCSD and tutored the UCLA users in 
its use. In 1985 Ward and Cheryl left UCLA and went to Monsanto in St. Louis, 
where Ward worked as a structural biologist. In 1987 they went to Agouron 
Pharmaceuticals in San Diego. And then in 1995 went cross-country to SmithKline 
Beecham (which became Glaxo SmithKline, merging with GlaxoWellcome). 

Ward was very involved with getting IMCA set up as a functional facility for 
pharmaceuticals at Argonne as SmithKline's representative. This experience gave 
him significant credibility in synchrotron macromolecular crystallography, and 
in 2003 he joined the GM/CA-CAT beamlines at the APS to help Bob Fischetti and 
others construct that excellent facility. During this time Cheryl worked at 
Shamrock Structures.

Ward moved to the NIH headquarters in 2007. There he took some responsibility 
for the Protein Structure Initiative, also playing an important role in 
supporting NIH synchrotron facilities. In 2010 he became the branch chief for 
the Structural Genomics and Proteomics Technology Branch in the Division of 
Cell Biology and Biophysics.  He remained in that position through 2017. At the 
2018 NIGMS re-organization Ward went to the Biophysics, Biomedical Technology, 
and Computational Biosciences division as the branch chief for the Biomedical 
Technology Branch. 

Ward helped oversee the big NIH-funded, $45 M construction of three major 
beamlines at NSLS-II, a project called ABBIX that ran 2011-2017. In 2017 he 
became program director for NIH support of structural biology beamlines at 
NSLS-II and other DOE synchrotrons. 

Many knew Ward for his always calm, reasoned demeanor; he was unflappable, 
resilient, and friendly. He was well read and devoted to his family.  


  Robert M. Sweet   E-Dress:  sw...@bnl.gov
  Scientific Advisor, CBMS: The Center for BioMolecular
Structure at NSLS-II
  Photon Sciences and Biology Dept
  Brookhaven Nat'l Lab.
  Upton, NY  11973 U.S.A.
  Phones: 631 344 3401  (Office)
631 338 7302  (Mobile)



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