[ccp4bb] phaser openmp
Dear all, it would be really great if someone could point out to me how to enable the openmp option for phaser during the compilation of the latest ccp4 release. The system will be a SUSE 11.3 64bit using gcc. Cheers, Jochen - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Josef Schneider Strasse 2, Haus D15 97080 Wuerzburg +49 (0) 9313180391 jochen.ku...@virchow.uni-wuerzburg.de
[ccp4bb] TLS from PDB records
Dear All, sorry for the probably silly question but the matter is somewhat urgent and I cant seem to find an appropriate solution ... I need to pull out the TLS params for a deposited pdb with partial B and use those parameters to calculate the total B factor. My problem is that I cant find a program that reads those params and puts them in a format TLSANL can read. I am probably missing something obvious here Many thanks in advance. Cheers, Jochen - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Josef Schneider Strasse 2, Haus D15 97070 Wuerzburg +49 (0) 9313180391 jochen.ku...@virchow.uni-wuerzburg.de
[ccp4bb] PhD position at the Rudolf Virchow Center
We are looking for a highly motivated PhD student in the field of structural biology of nucleotide excision DNA repair proteins. The position can be filled immediately and is funded for 3 years. The successful applicant will study the damage verification steps in prokaryotic and eukaryotic nucleotide excision repair by investigating relevant protein-DNA complexes at the molecular level. The Kisker lab is part of the Rudolf Virchow Center for Biomedical Research, a federally funded center of excellence. We offer a collaborative environment, state of the art equipment and excellent training opportunities within the context of an international graduate school. Informal enquiries should be directed to caroline.kis...@virchow.uni-wuerzburg.de Applications should be directed to petra.lue...@virchow.uni-wuerzburg.de - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Josef Schneider Strasse 2, Haus D15 97070 Wuerzburg +49 (0) 9313180391 jochen.ku...@virchow.uni-wuerzburg.de
[ccp4bb] fail to install ccp4i task for arp warp
Dear All, sorry to bother you with this but I just can't figure out what goes wrong ... I am running the latest version of snow leopard on a MBP unibody with the 64bit kernel. I have an up to date fink installation for native 64bit. With this I have installed ccp4 via fink. I have also installed the latest arp warp version (7.1). Both are running nicely individually ... The thing now is that I cannot install the arp warp task in ccp4i. Neither via the original arp warp installation which says it is successful but no tasks show up nor via the ccp4i interface which always ends up with: UnpackTaskArchive: uncompress failed to create /tmp/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar ExamineTaskArchive: failed to unpack temporary copy of /Users/joka/software/arp_warp_7.1/ARP_wARP_CCP4I6.tar.gz Needless to say that the packages unpack just fine when I try this without the interface using the same uncompress binary. It does not make a difference whether I use ccp4i with sudo, su or login as root. I am running out of options here and would really appreciate a hint in the right direction ... I have found this in the ccp4bb http://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg10117.html but that does not really help. Cheers, Jochen - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Josef Schneider Strasse 2, Haus D15 97070 Wuerzburg +49 (0) 9313180391 jochen.ku...@virchow.uni-wuerzburg.de
[ccp4bb] Job offer at Rudolf Virchow Center
Computer scientist We are looking for a computer scientist at the level of a postdoc for the structural biology groups at the Rudolf Virchow Center for Experimental Medicine at the University of Wuerzburg, Germany. The Rudolf Virchow Center is a specially funded center of excellence by the German Research Council and provides an excellent work environment and infrastructure. The position will be offered initially for four years with the possibility of extension. The salary will be according to the rate E13 of the german government service, depending on qualification. The person would be responsible for the maintenance of the software and hardware related to research in structural biology and would also be actively involved in research projects. The following qualifications are preferred: -experience with Unix/Linux system administration -experience in network administration -experience in shell scripting -knowledge in Fortran/C -experience with Macs and PCs Please send your application via e-mail to perso...@virchow.uni-wuerzburg.de or by mail to Rudolf-Virchow-Zentrum, Petra Lütke, Versbacher Straße 9, 97078 Würzburg For informal enquiries please contact Caroline.Kisker(at)virchow.uni- wuerzburg.de - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Versbacher Str. 9 97078 Wuerzburg +49 (0) 93120148303 jochen.ku...@virchow.uni-wuerzburg.de
