Re: [ccp4bb] Last few months updates, updated coot, ccp4i2, imosflm, etc
Dear Boaz, Jan, Currently the base version 7.0.0 is installed and all updates are then applied on top of this. This is very costly in terms of time and bandwidth. To mitigate this, a new mechanism is being developed by CCP4. A checkpoint version will be installed (something like minus 10 updates from the most recent) and then the last few updates applied. This will help improve the speed of installation, while still allowing a few updates to be rolled back, if required. The final kinks are being ironed out from the new installers at the moment, so these should be available fairly soon. There will eventually be a new release of CCP4, resetting the update count to zero, but that's a longer term plan. Cheers -- David On Sat, 7 Jul 2018 at 19:12, Boaz Shaanan wrote: > Hi, > > > For now, until there is a complete new version, I think that if you pick > up the latest build from the ccp4 site it includes all the updates. I could > be wrong though, but the CCP4 people will confirm this (or not). > > > Cheers, > > > Boaz > > > > > > > > > > > > > *Boaz Shaanan, Ph.D. Dept. of Life > Sciences Ben-Gurion University of the > Negev Beer-Sheva > 84105 > Israel > E-mail: > bshaa...@bgu.ac.il Phone: 972-8-647-2220 >Fax: 972-8-647-2992 or 972-8-646-1710* > > > > > > > > -- > *From:* CCP4 bulletin board on behalf of Jan > Stransky > *Sent:* Saturday, July 7, 2018 8:52 PM > *To:* CCP4BB@JISCMAIL.AC.UK > *Subject:* Re: [ccp4bb] Last few months updates, updated coot, ccp4i2, > imosflm, etc > > Dear Charles, > is there a plan to release new base package of CCP4 which would contain > all updates, so we don't have to go through the already quite lengthy > update process with new installations? > Best regards, > Jan > > On 07/05/2018 03:15 PM, Ballard, Charles (STFC,RAL,CSE) wrote: > > For those of you not applying updates, the last few months updates have > > included > > > > * phaser 2.8 > > * ccp4i2 > > * dials 1.9 (1.10 coming soon) > > * ccp4mg > > * coot 0.8.9.1 > > * imosflm/ipmosfm 7.2.2 > > > > plus interfaces to simbad, ample arcimboldo, and a dials gui DUI > > > > Update ID: 7.0.050 > > Date: 17.01.18 > > > > Component Description Mac OS 64-bit Linux 32-bitLinux > 64-bitWindows > > 32-bitWindows 64-bit > > coot 0.8.9 yes yes yes - - > > aimless 0.6.2 yes yes yes yes yes > > > > > > Update ID: 7.0.051 > > Date: 09.02.18 > > > > Component Description Mac OS 64-bit Linux 32-bitLinux > 64-bitWindows > > 32-bitWindows 64-bit > > phaser2.8.2 yes yes yes yes yes > > ccp4i updates for phaser 2.8 yes yes yes yes yes > > arcimboldoupdates for phaser 2.8 yes yes yes yes yes > > ample update to 1.4.1 yes yes yes yes yes > > simbadupdate to 0.1.10yes yes yes - - > > dials update to 1.8.4 yes yes yes yes yes > > ccp4i update for ampleyes yes yes yes yes > > > > Update ID: 7.0.052 > > Date: 28.02.18 > > > > Component Description Mac OS 64-bit Linux 32-bitLinux > 64-bitWindows > > 32-bitWindows 64-bit > > ccp4i2Numerous bug fixes, improvments to stability, speed and > > efficiencyyes yes yes yes yes > >New: Arcimboldo yes yes yes - - > >New: Simbad yes yes yes - - > >New: Ample yes yes yes yes yes > >Enhancements to existing interfaces yes yes yes > yes yes > >New crystal definition and interface introduced yes yes > yes yes yes > > > > Update ID: 7.0.053 > > Date: 19.03.18 > > > > Component Description Mac OS 64-bit Linux 32-bitLinux > 64-bitWindows > > 32-bitWindows 64-bit > > ccp4mgfix issues with some refmac output yes yes > yes yes yes > > pointless update to 1.11.10, read nXDS files yes yes > yes yes yes > > buccaneer Bug fixes yes yes yes yes yes > > refmacBug fixes and speed enhancementsyes yes > yes yes yes > > crank2
Re: [ccp4bb] Last few months updates, updated coot, ccp4i2, imosflm, etc
Hi, For now, until there is a complete new version, I think that if you pick up the latest build from the ccp4 site it includes all the updates. I could be wrong though, but the CCP4 people will confirm this (or not). Cheers, Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel E-mail: bshaa...@bgu.ac.il Phone: 972-8-647-2220 Fax: 972-8-647-2992 or 972-8-646-1710 From: CCP4 bulletin board on behalf of Jan Stransky Sent: Saturday, July 7, 2018 8:52 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Last few months updates, updated coot, ccp4i2, imosflm, etc Dear Charles, is there a plan to release new base package of CCP4 which would contain all updates, so we don't have to go through the already quite lengthy update process with new installations? Best regards, Jan On 07/05/2018 03:15 PM, Ballard, Charles (STFC,RAL,CSE) wrote: > For those of you not applying updates, the last few months updates have > included > > * phaser 2.8 > * ccp4i2 > * dials 1.9 (1.10 coming soon) > * ccp4mg > * coot 0.8.9.1 > * imosflm/ipmosfm 7.2.2 > > plus interfaces to simbad, ample arcimboldo, and a dials gui DUI > > Update ID: 7.0.050 > Date: 17.01.18 > > Component Description Mac OS 64-bit Linux 32-bit Linux 64-bit Windows > 32-bit Windows 64-bit > coot 0.8.9 yes yes yes - - > aimless 0.6.2 yes yes yes yes yes > > > Update ID: 7.0.051 > Date: 09.02.18 > > Component Description Mac OS 64-bit Linux 32-bit Linux 64-bit Windows > 32-bit Windows 64-bit > phaser 2.8.2 yes yes yes yes yes > ccp4i updates for phaser 2.8 yes yes yes yes yes > arcimboldo updates for phaser 2.8 yes yes yes yes yes > ample update to 1.4.1 yes yes yes yes yes > simbad update to 0.1.10 yes yes yes - - > dials update to 1.8.4 yes yes yes yes yes > ccp4i update for ample yes yes yes yes yes > > Update ID: 7.0.052 > Date: 28.02.18 > > Component Description Mac OS 64-bit Linux 32-bit Linux 64-bit Windows > 32-bit Windows 64-bit > ccp4i2 Numerous bug fixes, improvments to stability, speed and > efficiency yes yes yes yes yes > New: Arcimboldo yes yes yes - - > New: Simbad yes yes yes - - > New: Ample yes yes yes yes yes > Enhancements to existing interfaces yes yes yes yes yes > New crystal definition and interface introduced yes yes yes yes yes > > Update ID: 7.0.053 > Date: 19.03.18 > > Component Description Mac OS 64-bit Linux 32-bit Linux 64-bit Windows > 32-bit Windows 64-bit > ccp4mg fix issues with some refmac output yes yes yes yes yes > pointless update to 1.11.10, read nXDS files yes yes yes yes yes > buccaneer Bug fixes yes yes yes yes yes > refmac Bug fixes and speed enhancements yes yes yes yes yes > crank2 Bug fixes and enhancements yes yes yes yes yes > arcimboldo Bug fixes yes yes yes yes yes > molrep Bug fies yes yes yes yes yes > fragon 0.1.0, MR pipeline yes yes yes - - > acedrg New features and bug fixes yes yes yes yes yes > rabdam radition damage detection, command line only yes yes yes yes yes > clipper bug fix in mtz writing routine yes yes yes yes yes > morda database update 21 yes yes yes yes yes > > Update ID: 7.0.054 > Date: 29.03.18 > > Component Description Mac OS 64-bit Linux 32-bit Linux 64-bit Windows > 32-bit Windows 64-bit > shelxe bug fixes yes yes yes yes yes > correction to shelxe NCS code yes yes yes yes yes > monomers additional ligands yes yes yes yes yes > simbad lattice and contaminant search - - - yes yes > ccp4i2 new auspex interface yes yes yes yes y
Re: [ccp4bb] Last few months updates, updated coot, ccp4i2, imosflm, etc
Dear Charles, is there a plan to release new base package of CCP4 which would contain all updates, so we don't have to go through the already quite lengthy update process with new installations? Best regards, Jan On 07/05/2018 03:15 PM, Ballard, Charles (STFC,RAL,CSE) wrote: > For those of you not applying updates, the last few months updates have > included > > * phaser 2.8 > * ccp4i2 > * dials 1.9 (1.10 coming soon) > * ccp4mg > * coot 0.8.9.1 > * imosflm/ipmosfm 7.2.2 > > plus interfaces to simbad, ample arcimboldo, and a dials gui DUI > > Update ID: 7.0.050 > Date: 17.01.18 > > Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit > Windows > 32-bitWindows 64-bit > coot 0.8.9 yes yes yes - - > aimless 0.6.2 yes yes yes yes yes > > > Update ID: 7.0.051 > Date: 09.02.18 > > Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit > Windows > 32-bitWindows 64-bit > phaser2.8.2 yes yes yes yes yes > ccp4i updates for phaser 2.8 yes yes yes yes yes > arcimboldoupdates for phaser 2.8 yes yes yes yes yes > ample update to 1.4.1 yes yes yes yes yes > simbadupdate to 0.1.10yes yes yes - - > dials update to 1.8.4 yes yes yes yes yes > ccp4i update for ampleyes yes yes yes yes > > Update ID: 7.0.052 > Date: 28.02.18 > > Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit > Windows > 32-bitWindows 64-bit > ccp4i2Numerous bug fixes, improvments to stability, speed and > efficiencyyes yes yes yes yes > New: Arcimboldo yes yes yes - - > New: Simbad yes yes yes - - > New: Ample yes yes yes yes yes > Enhancements to existing interfaces yes yes yes yes > yes > New crystal definition and interface introduced yes yes yes > yes yes > > Update ID: 7.0.053 > Date: 19.03.18 > > Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit > Windows > 32-bitWindows 64-bit > ccp4mgfix issues with some refmac output yes yes yes > yes yes > pointless update to 1.11.10, read nXDS files yes yes yes > yes yes > buccaneer Bug fixes yes yes yes yes yes > refmacBug fixes and speed enhancementsyes yes yes > yes yes > crank2Bug fixes and enhancements yes yes yes yes > yes > arcimboldoBug fixes yes yes yes yes yes > molrepBug fiesyes yes yes yes yes > fragon0.1.0, MR pipeline yes yes yes - - > acedrgNew features and bug fixes yes yes yes yes > yes > rabdamradition damage detection, command line onlyyes yes > yes yes yes > clipper bug fix in mtz writing routine yes yes yes yes > yes > morda database update 21 yes yes yes yes yes > > Update ID: 7.0.054 > Date: 29.03.18 > > Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit > Windows > 32-bitWindows 64-bit > shelxebug fixes yes yes yes yes yes > correction to shelxe NCS code yes yes yes yes yes > monomers additional ligands yes yes yes yes yes > simbadlattice and contaminant search - - - yes > yes > ccp4i2new auspex interfaceyes yes yes yes yes > new simbad interface- - - yes yes > updated refmac interfaceyes yes yes yes yes > updated lorestr interface yes yes yes yes yes > updates arpwarp interface yes yes yes - - > mosflmipmosflm 7.2.2 yes yes yes yes yes > imosflm 7.2.2 yes yes yes yes yes > arcimboldoupdate for new shelxe yes yes yes - - > refmacfixed output coordinates in mmcif file yes yes yes > yes yes > > Update ID: 7.0.055 > Date: 16.04.18 > > Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit > Windows > 32-bitWindows 64-bit > coot 0.8.9.1 yes yes yes - - > xssp 3.0.0 yes yes yes yes yes > rabdamBug fixes yes yes yes yes yes > srs synchronise to monomer library yes yes yes yes yes > ccp4i2workaround for batch file launch issues - - - > yes yes > > > Update ID: 7.0.056 > Date: 27.04.18 > > Component Description
[ccp4bb] Last few months updates, updated coot, ccp4i2, imosflm, etc
For those of you not applying updates, the last few months updates have included * phaser 2.8 * ccp4i2 * dials 1.9 (1.10 coming soon) * ccp4mg * coot 0.8.9.1 * imosflm/ipmosfm 7.2.2 plus interfaces to simbad, ample arcimboldo, and a dials gui DUI Update ID: 7.0.050 Date: 17.01.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit coot0.8.9 yes yes yes - - aimless 0.6.2 yes yes yes yes yes Update ID: 7.0.051 Date: 09.02.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit phaser 2.8.2 yes yes yes yes yes ccp4i updates for phaser 2.8 yes yes yes yes yes arcimboldo updates for phaser 2.8 yes yes yes yes yes ample update to 1.4.1 yes yes yes yes yes simbad update to 0.1.10yes yes yes - - dials update to 1.8.4 yes yes yes yes yes ccp4i update for ampleyes yes yes yes yes Update ID: 7.0.052 Date: 28.02.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit ccp4i2 Numerous bug fixes, improvments to stability, speed and efficiency yes yes yes yes yes New: Arcimboldo yes yes yes - - New: Simbad yes yes yes - - New: Ample yes yes yes yes yes Enhancements to existing interfaces yes yes yes yes yes New crystal definition and interface introduced yes yes yes yes yes Update ID: 7.0.053 Date: 19.03.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit ccp4mg fix issues with some refmac output yes yes yes yes yes pointless update to 1.11.10, read nXDS files yes yes yes yes yes buccaneer Bug fixes yes yes yes yes yes refmac Bug fixes and speed enhancementsyes yes yes yes yes crank2 Bug fixes and enhancements yes yes yes yes yes arcimboldo Bug fixes yes yes yes yes yes molrep Bug fiesyes yes yes yes yes fragon 0.1.0, MR pipeline yes yes yes - - acedrg New features and bug fixes yes yes yes yes yes rabdam radition damage detection, command line onlyyes yes yes yes yes clipper bug fix in mtz writing routine yes yes yes yes yes morda database update 21 yes yes yes yes yes Update ID: 7.0.054 Date: 29.03.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit shelxe bug fixes yes yes yes yes yes correction to shelxe NCS code yes yes yes yes yes monomersadditional ligands yes yes yes yes yes simbad lattice and contaminant search - - - yes yes ccp4i2 new auspex interfaceyes yes yes yes yes new simbad interface- - - yes yes updated refmac interfaceyes yes yes yes yes updated lorestr interface yes yes yes yes yes updates arpwarp interface yes yes yes - - mosflm ipmosflm 7.2.2 yes yes yes yes yes imosflm 7.2.2 yes yes yes yes yes arcimboldo update for new shelxe yes yes yes - - refmac fixed output coordinates in mmcif file yes yes yes yes yes Update ID: 7.0.055 Date: 16.04.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit coot0.8.9.1 yes yes yes - - xssp3.0.0 yes yes yes yes yes rabdam Bug fixes yes yes yes yes yes srs synchronise to monomer library yes yes yes yes yes ccp4i2 workaround for batch file launch issues - - - yes yes Update ID: 7.0.056 Date: 27.04.18 Component Description Mac OS 64-bit Linux 32-bitLinux 64-bit Windows 32-bit Windows 64-bit monomerscorrections for ASN etc yes yes yes yes yes dui New interface for DIALS yes yes yes yes yes cctbx Update to 2018 January yes yes yes yes yes phaser Update to 2.8.2 yes yes yes yes yes dials Update to 1.9.2 yes yes yes yes yes xia2Update to 0.5.542 yes yes yes yes yes aimless Update to 0.7.1 yes yes yes yes yes ccp4i correction to phaser atom search interface yes yes yes yes yes imosflm correction to running of pointless and aimless -
