Re: [ccp4bb] Multiple active or allosteric pocket allignment
Hi Jay. It's ProFIT and you can find it at http://www.bioinf.org.uk/software/profit/ Hope this helps, Jose Jayashankar wrote: (snip) -- * Please note change in telephone number ? José Artur Brito, B.Sc. (Eng.), PhD Student Membrane Protein Crystallography Lab Instituto de Tecnologia Química e Biológica Oeiras - Portugal Tel.: +351.21.446.97.61* Fax: +351.21.443.36.44 E-mail: jbr...@itqb.unl.pt URL: http://xtal.itqb.unl.pt
Re: [ccp4bb] Multiple active or allosteric pocket allignment
Dear Miri, I cant find the FROFIT you mentioned. sincerly S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany. On Tue, Jun 16, 2009 at 8:03 AM, Miri Hirshberg m...@ebi.ac.uk wrote: Tue June. 16th 2009 EBI For example, FROFIT, where you can specify the residues involved in the actal alignment, and the residues to calculate the RMS on Miri On Tue, 16 Jun 2009, Jayashankar wrote: Dear friends, Is it possible to allign structure of proteins of same class or family just based on acive site residues or defined by its volume of cavity with preferred deviation. any suggestions could possibly help me. sincerely S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany. -- Dr Miri Hirshberg European Bioinformatics Institute UK http://www.ebi.ac.uk Phone: +44 (0) 1223 492647 FAX: +44 (0) 1223 494487
Re: [ccp4bb] Multiple active or allosteric pocket allignment
Tue June. 16th 2009 EBI For example, FROFIT, where you can specify the residues involved in the actal alignment, and the residues to calculate the RMS on Miri On Tue, 16 Jun 2009, Jayashankar wrote: Dear friends, Is it possible to allign structure of proteins of same class or family just based on acive site residues or defined by its volume of cavity with preferred deviation. any suggestions could possibly help me. sincerely S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany. -- Dr Miri Hirshberg European Bioinformatics Institute UK http://www.ebi.ac.uk Phone: +44 (0) 1223 492647 FAX: +44 (0) 1223 494487
[ccp4bb] Multiple active or allosteric pocket allignment
Dear friends, Is it possible to allign structure of proteins of same class or family just based on acive site residues or defined by its volume of cavity with preferred deviation. any suggestions could possibly help me. sincerely S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany.
