If you install the .tcl update from the CCP4 site, you will find the clash
menu setting under advanced options, IIRC.
Roger Rowlett
On Jun 20, 2012 6:08 PM, Santarsiero, Bernard D. b...@uic.edu wrote:
The new CCP4I interface for PHASER removed the menu item where you could
change the number of clashes. It's not set as a default to 5% of the
number of C-alpha atoms. Where is the default file?
I found the phaser_MR.def file in share/ccp4i/tasks, and changed the
parameter value, but it still used the default of 5%.
Thanks,
Bernie
--
Bernard D. Santarsiero
Research Professor
Center for Pharmaceutical Biotechnology and the
Department of Medicinal Chemistry and Pharmacognosy
Center for Structural Biology
Center for Clinical and Translational Science
University of Illinois at Chicago
MC870 3070MBRB 900 South Ashland Avenue
Chicago, IL 60607-7173 USA
(312) 413-0339 (office)
(312) 413-9303 (FAX)
http://www.uic.edu/labs/bds
