Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
Dear Philippe, I mixed up the signs and agree with you nice and much more quantitative explanation. Best, Tim On Thursday 05 January 2017 10:18:53 AM DUMAS Philippe wrote: > Le Jeudi 5 Janvier 2017 08:56 CET, Tim Gruenea écrit: > > I did not follow all the previous details of this discussion, but I think > one may say that the statement "The entropy of molecules arranged in a > crystal must be greatly larger than in solution" is incorrect. Of course, > there is an increase of entropy (DeltaS = S(solution) - S(crystal) > 0) > from the ordered crystalline state to the disordered solution state, hence > S(crystal) < S(solution). Te nice thing is that, without knowing anything > about the crystallization process, one can also say that DeltaS (per mole) > = DeltaH/T, where T is the absolute temperature anf DeltaH > 0 is the heat > absorbed by one mole of molecules going from the crystal state to the > solution state during the melting of the crystal. Hence, the > crystallization process, as with ice formation, produces heat (releases > heat in the solution). Would one measure (in a calorimeter) the heat > -DeltaH produced during crystallization, and the number of molecules > having formed the crystal, then one would obtain immediately the DeltaS of > crystallization. To be accurate: all of that is correct as far as T is the > equilibrium temperature where the two phases coexist and can exchange > reversiby (i.e. DeltaG = DeltaH - T DeltaS = 0). For ice melting at > atmospheric pressure this would be of course 273.15 K. Philippe Dumas > > > Dear Nicolas, > > > > are you sure this concept is correct? > > > > The entropy of molecules arranged in a crystal must be greatly larger than > > in solution. Hence the driving force for crystallisation is actually a > > drop in energy, and I am not sure there is actually a barrier. > > > > I would take the kids to the play ground and let them run around randomly. > > When I blow a wistle they should line up in an orderly manner. > > > > I am sure it will take some time before some sort of order is achieved, > > for > > the kids could face in various directions, or line up in blocks, or other > > shapes. Once a seed is there, i.e. once e.g. 4-5 kids have created a > > regular block, it will be much easier for the rest to line up (this is > > consistent with Patrick's explanation). > > > > Cheers, > > Tim > > > > On Wednesday 04 January 2017 05:45:50 PM Nicolas FOOS wrote: > > > Dear Evette, > > > > > > If I was is your situation (explaining nucleation and other concept). I > > > will discuss in terms of energy. > > > > > > I mean obtaining the initial nuclei is the "costly" step in terms of > > > energy. To represent that, out the classical curve of energy, I will use > > > a metaphoric representation such as jump over a barrier and run after. > > > > > > With this analogy, it's possible to explain that the first step is > > > > > > difficult and the second more accessible. If the barrier is to high, > > > it's impossible to continue and run. If you don't have any barrier it's > > > easy to run and if you only have a small barrier is not to difficult to > > > jump over and run. But It also allow you to explain that if you > > > facilitate the apparition of the first "surface" thanks to appropriate > > > method (seeding, dust...) you can help the first step (to continue with > > > the barrier story, it like you have ladder to help, or the ability to> > > > decrease the size of the barrier. > > > > > > For why the crystal and how, I will maybe use the example of orange > > > pyramid in the food store. Orange are stable together because they have > > > enough contact, because they have relatively homogeneous shape. If you > > > mixed orange with water melon it's difficult to obtain nice pyramid. > > > > > > For crystallization experiment which work, I have no Idea out of the one > > > you already mentioned. > > > > > > > > > Hope this help. > > > > > > Nicolas > > > > > > Nicolas Foos > > > PhD > > > Structural Biology Group > > > European Synchrotron Radiation Facility (E.S.R.F) > > > 71, avenue des Martyrs > > > CS 40220 > > > 38043 GRENOBLE Cedex 9 > > > +33 (0)6 76 88 14 87 > > > +33 (0)4 76 88 45 19 > > > > > > On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: > > > > Can anyone point to some especially useful resources to help explain > > > > to kids (pre-chemistry, ~age 10-12) how and why molecules crystallize? > > > > Maybe a good online movie or animation? I am especially needing help > > > > with the concept of nucleation, and why nucleation is slower and then > > > > crystal growth faster once nuclei have formed. I have been > > > > supervising some experiments growing sucrose crystals from > > > > supersaturated solutions, which have worked really well, but I am > > > > having more difficulty in explaining the underlying fundamental > > > > concepts in a way that is understandable to the kids. > > > > > > > >
Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
Has anyone on the list heard of growing 5-minute lysozyme crystals in an ITC bomb? Seems like it should produce a nice measureable change in heat. I suspect it will be endothermic, not exo, but am not too confident. JPK -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of DUMAS Philippe (VIE) Sent: Thursday, January 05, 2017 4:19 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids Le Jeudi 5 Janvier 2017 08:56 CET, Tim Gruene <tim.gru...@psi.ch> a écrit: I did not follow all the previous details of this discussion, but I think one may say that the statement "The entropy of molecules arranged in a crystal must be greatly larger than in solution" is incorrect. Of course, there is an increase of entropy (DeltaS = S(solution) - S(crystal) > 0) from the ordered crystalline state to the disordered solution state, hence S(crystal) < S(solution). Te nice thing is that, without knowing anything about the crystallization process, one can also say that DeltaS (per mole) = DeltaH/T, where T is the absolute temperature anf DeltaH > 0 is the heat absorbed by one mole of molecules going from the crystal state to the solution state during the melting of the crystal. Hence, the crystallization process, as with ice formation, produces heat (releases heat in the solution). Would one measure (in a calorimeter) the heat -DeltaH produced during crystallization, and the number of molecules having formed the crystal, then one would obtain immediately the DeltaS of crystallization. To be accurate: all of that is correct as far as T is the equilibrium temperature where the two phases coexist and can exchange reversiby (i.e. DeltaG = DeltaH - T DeltaS = 0). For ice melting at atmospheric pressure this would be of course 273.15 K. Philippe Dumas > Dear Nicolas, > > are you sure this concept is correct? > > The entropy of molecules arranged in a crystal must be greatly larger > than in solution. Hence the driving force for crystallisation is > actually a drop in energy, and I am not sure there is actually a barrier. > > I would take the kids to the play ground and let them run around randomly. > When I blow a wistle they should line up in an orderly manner. > > I am sure it will take some time before some sort of order is > achieved, for the kids could face in various directions, or line up in > blocks, or other shapes. Once a seed is there, i.e. once e.g. 4-5 kids > have created a regular block, it will be much easier for the rest to > line up (this is consistent with Patrick's explanation). > > Cheers, > Tim > > On Wednesday 04 January 2017 05:45:50 PM Nicolas FOOS wrote: > > Dear Evette, > > > > If I was is your situation (explaining nucleation and other > > concept). I will discuss in terms of energy. > > > > I mean obtaining the initial nuclei is the "costly" step in terms of > > energy. To represent that, out the classical curve of energy, I will > > use a metaphoric representation such as jump over a barrier and run after. > > > > With this analogy, it's possible to explain that the first step is > > difficult and the second more accessible. If the barrier is to high, > > it's impossible to continue and run. If you don't have any barrier > > it's easy to run and if you only have a small barrier is not to > > difficult to jump over and run. But It also allow you to explain > > that if you facilitate the apparition of the first "surface" thanks > > to appropriate method (seeding, dust...) you can help the first step > > (to continue with the barrier story, it like you have ladder to help, or > > the ability to> decrease the size of the barrier. > > > > For why the crystal and how, I will maybe use the example of orange > > pyramid in the food store. Orange are stable together because they > > have enough contact, because they have relatively homogeneous shape. > > If you mixed orange with water melon it's difficult to obtain nice pyramid. > > > > For crystallization experiment which work, I have no Idea out of the > > one you already mentioned. > > > > > > Hope this help. > > > > Nicolas > > > > Nicolas Foos > > PhD > > Structural Biology Group > > European Synchrotron Radiation Facility (E.S.R.F) 71, avenue des > > Martyrs CS 40220 > > 38043 GRENOBLE Cedex 9 > > +33 (0)6 76 88 14 87 > > +33 (0)4 76 88 45 19 > > > > On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: > > > Can anyone point to some especially useful resources to help > > > explain to kids (pre-chemistry, ~age 10-12) how
Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
Le Jeudi 5 Janvier 2017 08:56 CET, Tim Gruenea écrit: I did not follow all the previous details of this discussion, but I think one may say that the statement "The entropy of molecules arranged in a crystal must be greatly larger than in solution" is incorrect. Of course, there is an increase of entropy (DeltaS = S(solution) - S(crystal) > 0) from the ordered crystalline state to the disordered solution state, hence S(crystal) < S(solution). Te nice thing is that, without knowing anything about the crystallization process, one can also say that DeltaS (per mole) = DeltaH/T, where T is the absolute temperature anf DeltaH > 0 is the heat absorbed by one mole of molecules going from the crystal state to the solution state during the melting of the crystal. Hence, the crystallization process, as with ice formation, produces heat (releases heat in the solution). Would one measure (in a calorimeter) the heat -DeltaH produced during crystallization, and the number of molecules having formed the crystal, then one would obtain immediately the DeltaS of crystallization. To be accurate: all of that is correct as far as T is the equilibrium temperature where the two phases coexist and can exchange reversiby (i.e. DeltaG = DeltaH - T DeltaS = 0). For ice melting at atmospheric pressure this would be of course 273.15 K. Philippe Dumas > Dear Nicolas, > > are you sure this concept is correct? > > The entropy of molecules arranged in a crystal must be greatly larger than in > solution. Hence the driving force for crystallisation is actually a drop in > energy, and I am not sure there is actually a barrier. > > I would take the kids to the play ground and let them run around randomly. > When I blow a wistle they should line up in an orderly manner. > > I am sure it will take some time before some sort of order is achieved, for > the kids could face in various directions, or line up in blocks, or other > shapes. Once a seed is there, i.e. once e.g. 4-5 kids have created a regular > block, it will be much easier for the rest to line up (this is consistent with > Patrick's explanation). > > Cheers, > Tim > > On Wednesday 04 January 2017 05:45:50 PM Nicolas FOOS wrote: > > Dear Evette, > > > > If I was is your situation (explaining nucleation and other concept). I > > will discuss in terms of energy. > > > > I mean obtaining the initial nuclei is the "costly" step in terms of > > energy. To represent that, out the classical curve of energy, I will use > > a metaphoric representation such as jump over a barrier and run after. > > > > With this analogy, it's possible to explain that the first step is > > difficult and the second more accessible. If the barrier is to high, > > it's impossible to continue and run. If you don't have any barrier it's > > easy to run and if you only have a small barrier is not to difficult to > > jump over and run. But It also allow you to explain that if you > > facilitate the apparition of the first "surface" thanks to appropriate > > method (seeding, dust...) you can help the first step (to continue with > > the barrier story, it like you have ladder to help, or the ability to> > > decrease the size of the barrier. > > > > For why the crystal and how, I will maybe use the example of orange > > pyramid in the food store. Orange are stable together because they have > > enough contact, because they have relatively homogeneous shape. If you > > mixed orange with water melon it's difficult to obtain nice pyramid. > > > > For crystallization experiment which work, I have no Idea out of the one > > you already mentioned. > > > > > > Hope this help. > > > > Nicolas > > > > Nicolas Foos > > PhD > > Structural Biology Group > > European Synchrotron Radiation Facility (E.S.R.F) > > 71, avenue des Martyrs > > CS 40220 > > 38043 GRENOBLE Cedex 9 > > +33 (0)6 76 88 14 87 > > +33 (0)4 76 88 45 19 > > > > On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: > > > Can anyone point to some especially useful resources to help explain > > > to kids (pre-chemistry, ~age 10-12) how and why molecules crystallize? > > > Maybe a good online movie or animation? I am especially needing help > > > with the concept of nucleation, and why nucleation is slower and then > > > crystal growth faster once nuclei have formed. I have been > > > supervising some experiments growing sucrose crystals from > > > supersaturated solutions, which have worked really well, but I am > > > having more difficulty in explaining the underlying fundamental > > > concepts in a way that is understandable to the kids. > > > > > > Thanks! > > > Evette > > > > > > Evette Radisky, PhD > > > > > > Associate Professor of Cancer Biology > > > > > > Mayo Clinic Cancer Center > > > > > > Griffin Cancer Research Building > > > > > > 4500 San Pablo Road > > > > > > Jacksonville, FL 32224 > > > > > > tel: 904-953-6372 > > > > > > fax: 904-953-0277 > -- > -- > Paul Scherrer Institut > Dr. Tim Gruene > -
Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
I reckon you compare it to something going viral on the intertubes - most posts or videos do nothing, they only go viral if enough people share them. On 05/01/2017 07:56, Tim Gruene wrote: Dear Nicolas, are you sure this concept is correct? The entropy of molecules arranged in a crystal must be greatly larger than in solution. Hence the driving force for crystallisation is actually a drop in energy, and I am not sure there is actually a barrier. I would take the kids to the play ground and let them run around randomly. When I blow a wistle they should line up in an orderly manner. I am sure it will take some time before some sort of order is achieved, for the kids could face in various directions, or line up in blocks, or other shapes. Once a seed is there, i.e. once e.g. 4-5 kids have created a regular block, it will be much easier for the rest to line up (this is consistent with Patrick's explanation). Cheers, Tim On Wednesday 04 January 2017 05:45:50 PM Nicolas FOOS wrote: Dear Evette, If I was is your situation (explaining nucleation and other concept). I will discuss in terms of energy. I mean obtaining the initial nuclei is the "costly" step in terms of energy. To represent that, out the classical curve of energy, I will use a metaphoric representation such as jump over a barrier and run after. With this analogy, it's possible to explain that the first step is difficult and the second more accessible. If the barrier is to high, it's impossible to continue and run. If you don't have any barrier it's easy to run and if you only have a small barrier is not to difficult to jump over and run. But It also allow you to explain that if you facilitate the apparition of the first "surface" thanks to appropriate method (seeding, dust...) you can help the first step (to continue with the barrier story, it like you have ladder to help, or the ability to decrease the size of the barrier. For why the crystal and how, I will maybe use the example of orange pyramid in the food store. Orange are stable together because they have enough contact, because they have relatively homogeneous shape. If you mixed orange with water melon it's difficult to obtain nice pyramid. For crystallization experiment which work, I have no Idea out of the one you already mentioned. Hope this help. Nicolas Nicolas Foos PhD Structural Biology Group European Synchrotron Radiation Facility (E.S.R.F) 71, avenue des Martyrs CS 40220 38043 GRENOBLE Cedex 9 +33 (0)6 76 88 14 87 +33 (0)4 76 88 45 19 On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: Can anyone point to some especially useful resources to help explain to kids (pre-chemistry, ~age 10-12) how and why molecules crystallize? Maybe a good online movie or animation? I am especially needing help with the concept of nucleation, and why nucleation is slower and then crystal growth faster once nuclei have formed. I have been supervising some experiments growing sucrose crystals from supersaturated solutions, which have worked really well, but I am having more difficulty in explaining the underlying fundamental concepts in a way that is understandable to the kids. Thanks! Evette Evette Radisky, PhD Associate Professor of Cancer Biology Mayo Clinic Cancer Center Griffin Cancer Research Building 4500 San Pablo Road Jacksonville, FL 32224 tel: 904-953-6372 fax: 904-953-0277
Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
Dear Nicolas, are you sure this concept is correct? The entropy of molecules arranged in a crystal must be greatly larger than in solution. Hence the driving force for crystallisation is actually a drop in energy, and I am not sure there is actually a barrier. I would take the kids to the play ground and let them run around randomly. When I blow a wistle they should line up in an orderly manner. I am sure it will take some time before some sort of order is achieved, for the kids could face in various directions, or line up in blocks, or other shapes. Once a seed is there, i.e. once e.g. 4-5 kids have created a regular block, it will be much easier for the rest to line up (this is consistent with Patrick's explanation). Cheers, Tim On Wednesday 04 January 2017 05:45:50 PM Nicolas FOOS wrote: > Dear Evette, > > If I was is your situation (explaining nucleation and other concept). I > will discuss in terms of energy. > > I mean obtaining the initial nuclei is the "costly" step in terms of > energy. To represent that, out the classical curve of energy, I will use > a metaphoric representation such as jump over a barrier and run after. > > With this analogy, it's possible to explain that the first step is > difficult and the second more accessible. If the barrier is to high, > it's impossible to continue and run. If you don't have any barrier it's > easy to run and if you only have a small barrier is not to difficult to > jump over and run. But It also allow you to explain that if you > facilitate the apparition of the first "surface" thanks to appropriate > method (seeding, dust...) you can help the first step (to continue with > the barrier story, it like you have ladder to help, or the ability to > decrease the size of the barrier. > > For why the crystal and how, I will maybe use the example of orange > pyramid in the food store. Orange are stable together because they have > enough contact, because they have relatively homogeneous shape. If you > mixed orange with water melon it's difficult to obtain nice pyramid. > > For crystallization experiment which work, I have no Idea out of the one > you already mentioned. > > > Hope this help. > > Nicolas > > Nicolas Foos > PhD > Structural Biology Group > European Synchrotron Radiation Facility (E.S.R.F) > 71, avenue des Martyrs > CS 40220 > 38043 GRENOBLE Cedex 9 > +33 (0)6 76 88 14 87 > +33 (0)4 76 88 45 19 > > On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: > > Can anyone point to some especially useful resources to help explain > > to kids (pre-chemistry, ~age 10-12) how and why molecules crystallize? > > Maybe a good online movie or animation? I am especially needing help > > with the concept of nucleation, and why nucleation is slower and then > > crystal growth faster once nuclei have formed. I have been > > supervising some experiments growing sucrose crystals from > > supersaturated solutions, which have worked really well, but I am > > having more difficulty in explaining the underlying fundamental > > concepts in a way that is understandable to the kids. > > > > Thanks! > > Evette > > > > Evette Radisky, PhD > > > > Associate Professor of Cancer Biology > > > > Mayo Clinic Cancer Center > > > > Griffin Cancer Research Building > > > > 4500 San Pablo Road > > > > Jacksonville, FL 32224 > > > > tel: 904-953-6372 > > > > fax: 904-953-0277 -- -- Paul Scherrer Institut Dr. Tim Gruene - persoenlich - Principal Investigator Biology and Chemistry OFLC/102 CH-5232 Villigen PSI Phone: +41 (0)56 310 5297 GPG Key ID = A46BEE1A signature.asc Description: This is a digitally signed message part.
Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
Yes, but the kids will want to know WHY there is an energy barrier. I prefer my explanation below. Happy New Year to all Patrick _ > I am especially needing help with the concept of nucleation, and why nucleation is slower and then crystal growth faster once nuclei have formed. I always explain this by pointing out that, when the crystal is very small, each new molecule that lands on the surface of the nascent crystal can only be attached on one or two sides. When the crystal is larger, molecules that land are more likely to become attached on two, three or more sides. Atomic force microscopy images of "islands" that appear on the faces of crystals are also helpful. Islands are more likely to appear on larger faces. Once they appear they can rapidly spread to the edges of the crystal, which is (one mechanism explaining) why crystals have flat faces. On 4 January 2017 at 16:45, Nicolas FOOSwrote: > Dear Evette, > > If I was is your situation (explaining nucleation and other concept). I > will discuss in terms of energy. > > I mean obtaining the initial nuclei is the "costly" step in terms of > energy. To represent that, out the classical curve of energy, I will use a > metaphoric representation such as jump over a barrier and run after. > > With this analogy, it's possible to explain that the first step is > difficult and the second more accessible. If the barrier is to high, it's > impossible to continue and run. If you don't have any barrier it's easy to > run and if you only have a small barrier is not to difficult to jump over > and run. But It also allow you to explain that if you facilitate the > apparition of the first "surface" thanks to appropriate method (seeding, > dust...) you can help the first step (to continue with the barrier story, > it like you have ladder to help, or the ability to decrease the size of the > barrier. > > For why the crystal and how, I will maybe use the example of orange > pyramid in the food store. Orange are stable together because they have > enough contact, because they have relatively homogeneous shape. If you > mixed orange with water melon it's difficult to obtain nice pyramid. > > For crystallization experiment which work, I have no Idea out of the one > you already mentioned. > > > Hope this help. > > Nicolas > > Nicolas Foos > PhD > Structural Biology Group > European Synchrotron Radiation Facility (E.S.R.F) > 71, avenue des Martyrs > CS 40220 > 38043 GRENOBLE Cedex 9+33 (0)6 76 88 14 87 <+33%206%2076%2088%2014%2087>+33 > (0)4 76 88 45 19 <+33%204%2076%2088%2045%2019> > > On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: > > Can anyone point to some especially useful resources to help explain to > kids (pre-chemistry, ~age 10-12) how and why molecules crystallize? Maybe a > good online movie or animation? I am especially needing help with the > concept of nucleation, and why nucleation is slower and then crystal growth > faster once nuclei have formed. I have been supervising some experiments > growing sucrose crystals from supersaturated solutions, which have worked > really well, but I am having more difficulty in explaining the underlying > fundamental concepts in a way that is understandable to the kids. > > Thanks! > Evette > > Evette Radisky, PhD > > Associate Professor of Cancer Biology > > Mayo Clinic Cancer Center > > Griffin Cancer Research Building > > 4500 San Pablo Road > > Jacksonville, FL 32224 > > tel: 904-953-6372 > > fax: 904-953-0277 > > > -- patr...@douglas.co.ukDouglas Instruments Ltd. Douglas House, East Garston, Hungerford, Berkshire, RG17 7HD, UK Directors: Peter Baldock, Patrick Shaw Stewart http://www.douglas.co.uk Tel: 44 (0) 148-864-9090US toll-free 1-877-225-2034 Regd. England 2177994, VAT Reg. GB 480 7371 36
Re: [ccp4bb] Slightly OT: crystallization teaching resources for kids
Dear Evette, If I was is your situation (explaining nucleation and other concept). I will discuss in terms of energy. I mean obtaining the initial nuclei is the "costly" step in terms of energy. To represent that, out the classical curve of energy, I will use a metaphoric representation such as jump over a barrier and run after. With this analogy, it's possible to explain that the first step is difficult and the second more accessible. If the barrier is to high, it's impossible to continue and run. If you don't have any barrier it's easy to run and if you only have a small barrier is not to difficult to jump over and run. But It also allow you to explain that if you facilitate the apparition of the first "surface" thanks to appropriate method (seeding, dust...) you can help the first step (to continue with the barrier story, it like you have ladder to help, or the ability to decrease the size of the barrier. For why the crystal and how, I will maybe use the example of orange pyramid in the food store. Orange are stable together because they have enough contact, because they have relatively homogeneous shape. If you mixed orange with water melon it's difficult to obtain nice pyramid. For crystallization experiment which work, I have no Idea out of the one you already mentioned. Hope this help. Nicolas Nicolas Foos PhD Structural Biology Group European Synchrotron Radiation Facility (E.S.R.F) 71, avenue des Martyrs CS 40220 38043 GRENOBLE Cedex 9 +33 (0)6 76 88 14 87 +33 (0)4 76 88 45 19 On 30/12/2016 11:06, Radisky, Evette S., Ph.D. wrote: Can anyone point to some especially useful resources to help explain to kids (pre-chemistry, ~age 10-12) how and why molecules crystallize? Maybe a good online movie or animation? I am especially needing help with the concept of nucleation, and why nucleation is slower and then crystal growth faster once nuclei have formed. I have been supervising some experiments growing sucrose crystals from supersaturated solutions, which have worked really well, but I am having more difficulty in explaining the underlying fundamental concepts in a way that is understandable to the kids. Thanks! Evette Evette Radisky, PhD Associate Professor of Cancer Biology Mayo Clinic Cancer Center Griffin Cancer Research Building 4500 San Pablo Road Jacksonville, FL 32224 tel: 904-953-6372 fax: 904-953-0277