Re: [ccp4bb] design specs/tolerances for crystallization rooms?

2019-09-26 Thread Frank Von Delft
We have the dehumidification for both 4C and 20C.  Yes, drops dry out faster, 
probably;  there are ways of mitigating, but to do it properly, in my opinion 
you need a 
Shifter<https://www.diamond.ac.uk/Instruments/Mx/Fragment-Screening/Resources.html>,
 sold by OLT<http://www.oxfordlabtech.com/> (*) -- it makes a big difference 
(manuscript due for submission).


[(*) That's a shameless plug to the extent that we developed it, meaning I 
would say that.  But the vendor OLT are selling and developing it on their own, 
and I'm a customer, not a founder.]



On 26/09/2019 12:59, Sergei Strelkov wrote:

Dear Frank and everyone,


Thanks for useful tips. Snow in liquid nitrogen has been annoying us on a 
regular basis in fact. During some synchrotron sessions, a large percentage of 
crystals were covered with snow. We could never fully figure out how to get rid 
of it, although filtering LN2 before filling the vessel for freezing seemed to 
help a bit...


Would installing a dehumidifier in a standard 20C crystallization room (where 
we mount most of our crystals) be a good idea? Any experiences there? I guess 
the downside would be that small crystallization drops would be drying more 
quickly...


Best wishes,

Sergei


Prof. Sergei V. Strelkov Laboratory for Biocrystallography Department of 
Pharmaceutical Sciences, KU Leuven O, Campus Gasthuisberg, Herestraat 49 bus 
822, 3000 Leuven, Belgium Phone: +32 16 33 08 45, mobile: +32 486 29 41 32 Lab 
pages: 
http://pharm.kuleuven.be/Biocrystallography<http://pharm.kuleuven.be/anafar>


From: CCP4 bulletin board <mailto:CCP4BB@JISCMAIL.AC.UK> 
on behalf of Frank Von Delft 
<mailto:frank.vonde...@sgc.ox.ac.uk>
Sent: Wednesday, September 25, 2019 7:03
To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK>
Subject: Re: [ccp4bb] design specs/tolerances for crystallization rooms?

My colleague Opher Gileadi gave us an excellent tip when we were designing our 
4C harvesting room, over a decade ago:  set it to 7C.  The crystals are 
unlikely to mind, but it's SO much more comfortable to be in for hours.

I seem to remember he mentioned something like a comfort inflection point as 
you approach 4C.

Install low-flow fans.  Fridge people seem to default to installing hurricane 
machines, you have to tell them that a very very small flow is enough.

Get strong light - probably even those daylight things (we don't have them).  
Being cold is miserable enough already, there's no need to compound it with 
weak light.

Vibration - that dwindles to insignificance if the air flow goes down.

Humidity - we installed (at considerable expense) a low humidity air supply - 
really hard to know just how much it helps, but a few years ago when I had it 
turned it off to help save energy, very quickly I heard complaints about snow 
in the liquid nitrogen becoming a major hassle.  So based on that set of 
anecdotes, I conclude it probably is worth having dry air.

It's much cheaper though if they can design it into the building's 
infrastructure, if it's a new building;  retrofitting turned out to be super 
expensive (in our case).

As dry as possible.  Look at and understand the psychrometric chart (google 
it):  if you're in even vaguely warm or temperate regions (or seasons), cooling 
the intake air to 4C brings it to below dew point, and then condensation and 
snow are guaranteed.

Size - make it as big as you can get away with, with lots of bench and shelf 
space.  Your students will already be miserably cold, no need for them to be 
cramped too.

Good luck!
Frank





On 24/09/2019 23:40, Scott, Emily wrote:
Anyone out there specifically design rooms for (protein) crystallization at ~22 
deg and 4 deg C?  If you have successes or failures and can share any design 
specs with regard to vibration, temperature, and humidity tolerances, it would 
be much appreciated to pass on to the architects for our new laboratory.

Sincerely,
Emily Scott

--
Emily Scott, Ph.D.
Professor, Medicinal Chemistry/Pharmacology/Biophysics
Faculty Director, BioNMR Core Lab
University of Michigan
428 Church Street
Ann Arbor, MI 48109-1065
Phone:  734-764-3530
https://pharmacy.umich.edu/people/scottee
Lab webpage:  http://scottlab.info



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Re: [ccp4bb] design specs/tolerances for crystallization rooms?

2019-09-26 Thread Sergei Strelkov
Dear Frank and everyone,


Thanks for useful tips. Snow in liquid nitrogen has been annoying us on a 
regular basis in fact. During some synchrotron sessions, a large percentage of 
crystals were covered with snow. We could never fully figure out how to get rid 
of it, although filtering LN2 before filling the vessel for freezing seemed to 
help a bit...


Would installing a dehumidifier in a standard 20C crystallization room (where 
we mount most of our crystals) be a good idea? Any experiences there? I guess 
the downside would be that small crystallization drops would be drying more 
quickly...


Best wishes,

Sergei


Prof. Sergei V. Strelkov Laboratory for Biocrystallography Department of 
Pharmaceutical Sciences, KU Leuven O, Campus Gasthuisberg, Herestraat 49 bus 
822, 3000 Leuven, Belgium Phone: +32 16 33 08 45, mobile: +32 486 29 41 32 Lab 
pages: 
http://pharm.kuleuven.be/Biocrystallography<http://pharm.kuleuven.be/anafar>


From: CCP4 bulletin board  on behalf of Frank Von Delft 

Sent: Wednesday, September 25, 2019 7:03
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] design specs/tolerances for crystallization rooms?

My colleague Opher Gileadi gave us an excellent tip when we were designing our 
4C harvesting room, over a decade ago:  set it to 7C.  The crystals are 
unlikely to mind, but it's SO much more comfortable to be in for hours.

I seem to remember he mentioned something like a comfort inflection point as 
you approach 4C.

Install low-flow fans.  Fridge people seem to default to installing hurricane 
machines, you have to tell them that a very very small flow is enough.

Get strong light - probably even those daylight things (we don't have them).  
Being cold is miserable enough already, there's no need to compound it with 
weak light.

Vibration - that dwindles to insignificance if the air flow goes down.

Humidity - we installed (at considerable expense) a low humidity air supply - 
really hard to know just how much it helps, but a few years ago when I had it 
turned it off to help save energy, very quickly I heard complaints about snow 
in the liquid nitrogen becoming a major hassle.  So based on that set of 
anecdotes, I conclude it probably is worth having dry air.

It's much cheaper though if they can design it into the building's 
infrastructure, if it's a new building;  retrofitting turned out to be super 
expensive (in our case).

As dry as possible.  Look at and understand the psychrometric chart (google 
it):  if you're in even vaguely warm or temperate regions (or seasons), cooling 
the intake air to 4C brings it to below dew point, and then condensation and 
snow are guaranteed.

Size - make it as big as you can get away with, with lots of bench and shelf 
space.  Your students will already be miserably cold, no need for them to be 
cramped too.

Good luck!
Frank





On 24/09/2019 23:40, Scott, Emily wrote:
Anyone out there specifically design rooms for (protein) crystallization at ~22 
deg and 4 deg C?  If you have successes or failures and can share any design 
specs with regard to vibration, temperature, and humidity tolerances, it would 
be much appreciated to pass on to the architects for our new laboratory.

Sincerely,
Emily Scott

--
Emily Scott, Ph.D.
Professor, Medicinal Chemistry/Pharmacology/Biophysics
Faculty Director, BioNMR Core Lab
University of Michigan
428 Church Street
Ann Arbor, MI 48109-1065
Phone:  734-764-3530
https://pharmacy.umich.edu/people/scottee
Lab webpage:  http://scottlab.info



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Re: [ccp4bb] design specs/tolerances for crystallization rooms?

2019-09-25 Thread Patrick Shaw Stewart
>  if you're in even vaguely warm or temperate regions (or seasons), cooling
> the intake air to 4C brings it to below dew point, and then condensation
> and snow are guaranteed.


I once serviced a robot in a 4C room in Singapore, which didn't seem to
have any kind of dehumidification - or maybe it had broken down.  Water was
running feely down the walls and poling on the floor, and the robot was
covered in condensation.  Every non-stainless screw on the controller,
computer, robot etc was rusty.  Interestingly, both the robot and the
computer still worked.

Patrick


On Wed, Sep 25, 2019 at 6:04 AM Frank Von Delft 
wrote:

> My colleague Opher Gileadi gave us an excellent tip when we were designing
> our 4C harvesting room, over a decade ago:  *set it to 7C*.  The crystals
> are unlikely to mind, but it's SO much more comfortable to be in for
> hours.
>
> I seem to remember he mentioned something like a comfort inflection point
> as you approach 4C.
>
> *Install low-flow fans*.  Fridge people seem to default to installing
> hurricane machines, you have to tell them that a very very small flow is
> enough.
>
> *Get strong light* - probably even those daylight things (we don't have
> them).  Being cold is miserable enough already, there's no need to compound
> it with weak light.
>
> *Vibration* - that dwindles to insignificance if the air flow goes down.
>
> *Humidity* - we installed (at considerable expense) a low humidity air
> supply - really hard to know just how much it helps, but a few years ago
> when I had it turned it off to help save energy, very quickly I heard
> complaints about snow in the liquid nitrogen becoming a major hassle.  So
> based on that set of anecdotes, I conclude it probably *is* worth having
> dry air.
>
> It's *much* cheaper though if they can design it into the building's
> infrastructure, if it's a new building;  retrofitting turned out to be
> super expensive (in our case).
>
> As dry as possible.  Look at and understand the psychrometric chart
> (google it):  if you're in even vaguely warm or temperate regions (or
> seasons), cooling the intake air to 4C brings it to below dew point, and
> then condensation and snow are guaranteed.
>
> *Size* - make it as big as you can get away with, with lots of bench and
> shelf space.  Your students will already be miserably cold, no need for
> them to be cramped too.
>
> Good luck!
> Frank
>
>
>
>
>
> On 24/09/2019 23:40, Scott, Emily wrote:
>
> Anyone out there specifically design rooms for (protein) crystallization
> at ~22 deg and 4 deg C?  If you have successes or failures and can share
> any design specs with regard to vibration, temperature, and humidity
> tolerances, it would be much appreciated to pass on to the architects for
> our new laboratory.
>
>
>
> Sincerely,
>
> Emily Scott
>
>
>
> --
>
> Emily Scott, Ph.D.
>
> Professor, Medicinal Chemistry/Pharmacology/Biophysics
>
> Faculty Director, BioNMR Core Lab
>
> University of Michigan
>
> 428 Church Street
>
> Ann Arbor, MI 48109-1065
>
> Phone:  734-764-3530
>
> https://pharmacy.umich.edu/people/scottee
>
> Lab webpage:  http://scottlab.info
>
>
>
>
>
> **
> Electronic Mail is not secure, may not be read every day, and should not
> be used for urgent or sensitive issues
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>
>
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>


-- 
 patr...@douglas.co.ukDouglas Instruments Ltd.
 Douglas House, East Garston, Hungerford, Berkshire, RG17 7HD, UK
 Directors: Peter Baldock, Patrick Shaw Stewart

 http://www.douglas.co.uk
 Tel: 44 (0) 148-864-9090US toll-free 1-877-225-2034
 Regd. England 2177994, VAT Reg. GB 480 7371 36



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Re: [ccp4bb] design specs/tolerances for crystallization rooms?

2019-09-24 Thread Frank Von Delft
My colleague Opher Gileadi gave us an excellent tip when we were designing our 
4C harvesting room, over a decade ago:  set it to 7C.  The crystals are 
unlikely to mind, but it's SO much more comfortable to be in for hours.

I seem to remember he mentioned something like a comfort inflection point as 
you approach 4C.

Install low-flow fans.  Fridge people seem to default to installing hurricane 
machines, you have to tell them that a very very small flow is enough.

Get strong light - probably even those daylight things (we don't have them).  
Being cold is miserable enough already, there's no need to compound it with 
weak light.

Vibration - that dwindles to insignificance if the air flow goes down.

Humidity - we installed (at considerable expense) a low humidity air supply - 
really hard to know just how much it helps, but a few years ago when I had it 
turned it off to help save energy, very quickly I heard complaints about snow 
in the liquid nitrogen becoming a major hassle.  So based on that set of 
anecdotes, I conclude it probably is worth having dry air.

It's much cheaper though if they can design it into the building's 
infrastructure, if it's a new building;  retrofitting turned out to be super 
expensive (in our case).

As dry as possible.  Look at and understand the psychrometric chart (google 
it):  if you're in even vaguely warm or temperate regions (or seasons), cooling 
the intake air to 4C brings it to below dew point, and then condensation and 
snow are guaranteed.

Size - make it as big as you can get away with, with lots of bench and shelf 
space.  Your students will already be miserably cold, no need for them to be 
cramped too.

Good luck!
Frank





On 24/09/2019 23:40, Scott, Emily wrote:
Anyone out there specifically design rooms for (protein) crystallization at ~22 
deg and 4 deg C?  If you have successes or failures and can share any design 
specs with regard to vibration, temperature, and humidity tolerances, it would 
be much appreciated to pass on to the architects for our new laboratory.

Sincerely,
Emily Scott

--
Emily Scott, Ph.D.
Professor, Medicinal Chemistry/Pharmacology/Biophysics
Faculty Director, BioNMR Core Lab
University of Michigan
428 Church Street
Ann Arbor, MI 48109-1065
Phone:  734-764-3530
https://pharmacy.umich.edu/people/scottee
Lab webpage:  http://scottlab.info



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[ccp4bb] design specs/tolerances for crystallization rooms?

2019-09-24 Thread Scott, Emily
Anyone out there specifically design rooms for (protein) crystallization at ~22 
deg and 4 deg C?  If you have successes or failures and can share any design 
specs with regard to vibration, temperature, and humidity tolerances, it would 
be much appreciated to pass on to the architects for our new laboratory.

Sincerely,
Emily Scott

--
Emily Scott, Ph.D.
Professor, Medicinal Chemistry/Pharmacology/Biophysics
Faculty Director, BioNMR Core Lab
University of Michigan
428 Church Street
Ann Arbor, MI 48109-1065
Phone:  734-764-3530
https://pharmacy.umich.edu/people/scottee
Lab webpage:  http://scottlab.info


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