Re: [ccp4bb] fail to install ccp4i task for arp warp
Dear Jochen, Huw and others, We have managed to reproduce the problem on a 64bit Mac with fink-installed CCP4. We can confirm that the problem appears to be related to 64bit TCL/bltwish as suggested by Huw. Invoking a 32-bit installation of fink alongside a 64 bit one can be tricky, so we propose the following solution which should work in every case. Firstly, get a different tcl - this could be the version of tcl from a 32 bit installation of fink, or otherwise from a downloaded TCL installation, from, for example, ActiveState: http://www.activestate.com/activetcl The introduction of ARP/wARP into the GUI will have to be done using this version of tcl. I would suggest that the simplest way of doing so is to modify the install_csh.sh script that is in the downloaded ARP/wARP folder. At line 565, replace the line: $CCP4I_TCLTK/tclsh eof | tail -2 to point to whatever tclsh you intend to use. For example, if you have a 32 bit fink installation, based in the folder /sw32, then the line should read: /sw32/bin/tclsh eof | tail -2 A second option would be to modify the setting for CCP4I_TCLTK in the ccp4 setup script appropriate to whatever shell you use. In this instance, both manual installation of ARP/wARP into the GUI and installation using the install.sh script should be possible once the modification has been made and the environment variables reset. If you need any further details on how this could be done for your own shell, let me know. Note that installation using this method will require one to operate in a sudo shell, and of course have all environment variables set up in advance of installation, as laid out in the attachment from Huw. HTH, Ciaran Carolan On 06/09/2010 16:10, Huw Jenkins wrote: On 31 Aug 2010, at 14:56, Jochen Kuper wrote: sorry to bother you with this but I just can't figure out what goes wrong ... I am running the latest version of snow leopard on a MBP unibody with the 64bit kernel. I have an up to date fink installation for native 64bit. I've seen this too - it seems to be due to problems with 64bit bltwish. There is a workaround here: http://proteincrystallography.org/ccp4bb/message13191.html but that unfortunately requires a 32 bit fink installation of CCP4 alongside the 64bit one. I can confirm that this works and once installed ARP/wARP and 64bit CCP4 work together fine. Huw -- Dr Huw Jenkins Astbury Centre for Structural Molecular Biology University of Leeds -- Ciaran Carolan EIPOD Postdoctoral Researcher Lamzin Group EMBL Hamburg Outstation Notkestrasse 85 Hamburg Germany Ph. +49 40 89902340
Re: [ccp4bb] fail to install ccp4i task for arp warp
On 31 Aug 2010, at 14:56, Jochen Kuper wrote: sorry to bother you with this but I just can't figure out what goes wrong ... I am running the latest version of snow leopard on a MBP unibody with the 64bit kernel. I have an up to date fink installation for native 64bit. I've seen this too - it seems to be due to problems with 64bit bltwish. There is a workaround here: http://proteincrystallography.org/ccp4bb/message13191.html but that unfortunately requires a 32 bit fink installation of CCP4 alongside the 64bit one. I can confirm that this works and once installed ARP/wARP and 64bit CCP4 work together fine. Huw -- Dr Huw Jenkins Astbury Centre for Structural Molecular Biology University of Leeds
Re: [ccp4bb] fail to install ccp4i task for arp warp
Dear Jochen and the others, your problem is different from the one described here recently and a different fix will be needed. One major difference is that in your case CCP4 was installed via fink, while I have used the ccp4.ac.uk download pages which as far as I can tell never resulted in an installation with this problem. Thus I have no computer at the moment that reproduces it, sorry. For now to circumvent it - as suggested by Ronan Keegan - please try to install the 'ARP/wARP' task manually into the 'user's local CCP4i' area and not the 'main CCP4i' area of your installation. If this works, could you please tell us? Regards, Gerrit. On 8/31/10 3:56 PM, Jochen Kuper wrote: Dear All, sorry to bother you with this but I just can't figure out what goes wrong ... I am running the latest version of snow leopard on a MBP unibody with the 64bit kernel. I have an up to date fink installation for native 64bit. With this I have installed ccp4 via fink. I have also installed the latest arp warp version (7.1). Both are running nicely individually ... The thing now is that I cannot install the arp warp task in ccp4i. Neither via the original arp warp installation which says it is successful but no tasks show up nor via the ccp4i interface which always ends up with: UnpackTaskArchive: uncompress failed to create /tmp/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar ExamineTaskArchive: failed to unpack temporary copy of /Users/joka/software/arp_warp_7.1/ARP_wARP_CCP4I6.tar.gz Needless to say that the packages unpack just fine when I try this without the interface using the same uncompress binary. It does not make a difference whether I use ccp4i with sudo, su or login as root. I am running out of options here and would really appreciate a hint in the right direction ... I have found this in the ccp4bb http://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg10117.html but that does not really help. Cheers, Jochen - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Josef Schneider Strasse 2, Haus D15 97070 Wuerzburg +49 (0) 9313180391 jochen.ku...@virchow.uni-wuerzburg.de mailto:jochen.ku...@virchow.uni-wuerzburg.de
[ccp4bb] fail to install ccp4i task for arp warp
Dear All, sorry to bother you with this but I just can't figure out what goes wrong ... I am running the latest version of snow leopard on a MBP unibody with the 64bit kernel. I have an up to date fink installation for native 64bit. With this I have installed ccp4 via fink. I have also installed the latest arp warp version (7.1). Both are running nicely individually ... The thing now is that I cannot install the arp warp task in ccp4i. Neither via the original arp warp installation which says it is successful but no tasks show up nor via the ccp4i interface which always ends up with: UnpackTaskArchive: uncompress failed to create /tmp/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar ExamineTaskArchive: failed to unpack temporary copy of /Users/joka/software/arp_warp_7.1/ARP_wARP_CCP4I6.tar.gz Needless to say that the packages unpack just fine when I try this without the interface using the same uncompress binary. It does not make a difference whether I use ccp4i with sudo, su or login as root. I am running out of options here and would really appreciate a hint in the right direction ... I have found this in the ccp4bb http://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg10117.html but that does not really help. Cheers, Jochen - Dr. Jochen Kuper Rudolf Virchow Center for Biomedical Research Josef Schneider Strasse 2, Haus D15 97070 Wuerzburg +49 (0) 9313180391 jochen.ku...@virchow.uni-wuerzburg.de
