Re: [ccp4bb] hkl2map on Mac OSX 10.6
Just a hint: Subshels do not always use aliases, so put shelx etc. in your path e.g. in /usr/local/bin Am 15.07.11 11:40, schrieb Sebastiano Pasqualato: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: ... Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 -- Joachim Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: MinDirig Heiko Gevers, Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] hkl2map on Mac OSX 10.6
I only managed to get it working using zsh. All other shells were giving me errors. Ciao R. On 15 Jul 2011, at 10:40, Sebastiano Pasqualato wrote: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: Screen shot 2011-07-15 at 11.39.22 AM.png Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.ukmailto:roberto.stei...@kcl.ac.uk
Re: [ccp4bb] hkl2map on Mac OSX 10.6
thanks Joachim. thanks Luca, the path hint was successful. I have added the lines : export SHELXPATH=~/xtal/shelx_intelmac export PATH=$PATH:$SHELXPATH to my .bashrc, rather than adding the aliases, and now hkl2map find the shelx executables. (it does complain that I don't have xfit, but I guess that's not a big deal) Thanks again, ciao, s On Jul 15, 2011, at 11:44 AM, Joachim Reichelt wrote: Just a hint: Subshels do not always use aliases, so put shelx etc. in your path e.g. in /usr/local/bin Am 15.07.11 11:40, schrieb Sebastiano Pasqualato: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: ... Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 -- Joachim Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: MinDirig Heiko Gevers, Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477 -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990
Re: [ccp4bb] hkl2map on Mac OSX 10.6
works fine in bash for me On Jul 15, 2011, at 5:51 AM, Steiner, Roberto wrote: I only managed to get it working using zsh. All other shells were giving me errors. Ciao R. On 15 Jul 2011, at 10:40, Sebastiano Pasqualato wrote: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: Screen shot 2011-07-15 at 11.39.22 AM.png Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.ukmailto:roberto.stei...@kcl.ac.uk .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/
Re: [ccp4bb] hkl2map on Mac OSX 10.6
and in tcsh for me... On 15 Jul 2011, at 14:48, Bosch, Juergen wrote: works fine in bash for me On Jul 15, 2011, at 5:51 AM, Steiner, Roberto wrote: I only managed to get it working using zsh. All other shells were giving me errors. Ciao R. On 15 Jul 2011, at 10:40, Sebastiano Pasqualato wrote: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: Screen shot 2011-07-15 at 11.39.22 AM.png Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.uk .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/ Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH http://www.iucr.org/resources/commissions/crystallographic-computing/schools/mieres2011
Re: [ccp4bb] hkl2map on Mac OSX 10.6
...and in zsh for me r On 15 Jul 2011, at 14:56, Harry Powell wrote: and in tcsh for me... On 15 Jul 2011, at 14:48, Bosch, Juergen wrote: works fine in bash for me On Jul 15, 2011, at 5:51 AM, Steiner, Roberto wrote: I only managed to get it working using zsh. All other shells were giving me errors. Ciao R. On 15 Jul 2011, at 10:40, Sebastiano Pasqualato wrote: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: Screen shot 2011-07-15 at 11.39.22 AM.png Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.ukmailto:roberto.stei...@kcl.ac.uk .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/ Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH http://www.iucr.org/resources/commissions/crystallographic-computing/schools/mieres2011 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.ukmailto:roberto.stei...@kcl.ac.uk
Re: [ccp4bb] hkl2map on Mac OSX 10.6
does it work on Windows ? Just curious, because I will hit this roadblock soon. Jürgen On Jul 15, 2011, at 10:37 AM, Steiner, Roberto wrote: ...and in zsh for me r On 15 Jul 2011, at 14:56, Harry Powell wrote: and in tcsh for me... On 15 Jul 2011, at 14:48, Bosch, Juergen wrote: works fine in bash for me On Jul 15, 2011, at 5:51 AM, Steiner, Roberto wrote: I only managed to get it working using zsh. All other shells were giving me errors. Ciao R. On 15 Jul 2011, at 10:40, Sebastiano Pasqualato wrote: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: Screen shot 2011-07-15 at 11.39.22 AM.png Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.ukmailto:roberto.stei...@kcl.ac.uk .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/ Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH http://www.iucr.org/resources/commissions/crystallographic-computing/schools/mieres2011 Roberto Steiner, PhD Randall Division of Cell and Molecular Biophysics Group Leader King's College London Room 3.10A New Hunt's House Guy's Campus SE1 1UL, London, UK Tel 0044-20-78488216 Fax 0044-20-78486435 roberto.stei...@kcl.ac.ukmailto:roberto.stei...@kcl.ac.uk .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/
