Re: [ccp4bb] imosflm conflict with mosflm (OS X/fink 32-bit)
Dear Engin: I've put placeholder packages for those entitled imosflm-aqua and mosflm in fink CVS that simply point back to what is in ccp4. The imosflm package remains a placeholder with dependencies on all the X11-based tcl/tk extensions required to get imosflm in ccp4 to work with an X11 display (which you might need if you don't have OS X 10.6, or if you want to remote-display the GUI). All the best, Bill On Jul 6, 2010, at 2:13 PM, Engin Özkan wrote: Thanks for clearing that. Setting the mosflm executable to the ccp4 version, in combination with either the fink or the system wish, gives a nicely working imosflm. And thanks for the fink packages... Engin On 7/6/10 6:36 AM, William G. Scott wrote: Remove both. On OS X, 10.6, imosflm uses the tcl/tk supplied with OS X, and the latest mosflm is in ccp4, so there is no need for any of that. Just use what is in ccp4. Sorry for this. On Jul 5, 2010, at 4:34 PM, Engin Özkan wrote: Hi everybody, I was doing a regular fink update (OS X 10.6.4, 32-bit fink) when I encountered a silly outcome, which I thought others might have observed. During the imosflm update, I get an error saying that imosflm depends on mosflm, and it also conflicts with mosflm at the same time. This was my list of mosflm-related packages: % fink list mosflm Information about 9265 packages read in 0 seconds. (i) imosflm 1:1.0.4-3 Installs mosflm GUI for use with X11 TclTk imosflm-aqua 1:1.0.4-3 Installs mosflm GUI for use with aqua TclTk i mosflm7.0.6-2X-ray data processing, large display And below is the error. A workaround is removing mosflm, and using ipmosflm from the ccp4 installation. Is any of this expected with these two packages under fink? Best, Engin The package 'imosflm' will be installed. Reading dependency for imosflm-1.0.4-3... The following package will be installed or updated: imosflm Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb dpkg: considering removing mosflm in favour of imosflm ... dpkg: no, cannot remove mosflm (--auto-deconfigure will help): imosflm depends on mosflm (= 7.0.6) mosflm is to be removed. dpkg: regarding .../imosflm_1.0.4-3_darwin-i386.deb containing imosflm: imosflm conflicts with mosflm mosflm (version 7.0.6-2) is installed. /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb (--install): conflicting packages - not installing imosflm Errors were encountered while processing: /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Failed: can't install package imosflm-1.0.4-3 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111
Re: [ccp4bb] imosflm conflict with mosflm (OS X/fink 32-bit)
Hi Engin This is almost certainly a Bill Scott issue, so you'll have to wait until he reads his e-mail this morning! Unfortunately, the Mosflm developers (i.e. me) have no experience of setting Fink dependencies so we can't help you. We don't use Fink for our distros of iMosflm and Mosflm, and have no plans to do so. On 5 Jul 2010, at 23:34, Engin Özkan wrote: Hi everybody, I was doing a regular fink update (OS X 10.6.4, 32-bit fink) when I encountered a silly outcome, which I thought others might have observed. During the imosflm update, I get an error saying that imosflm depends on mosflm, and it also conflicts with mosflm at the same time. This was my list of mosflm-related packages: % fink list mosflm Information about 9265 packages read in 0 seconds. (i) imosflm 1:1.0.4-3 Installs mosflm GUI for use with X11 TclTk imosflm-aqua 1:1.0.4-3 Installs mosflm GUI for use with aqua TclTk i mosflm7.0.6-2X-ray data processing, large display And below is the error. A workaround is removing mosflm, and using ipmosflm from the ccp4 installation. Is any of this expected with these two packages under fink? Best, Engin The package 'imosflm' will be installed. Reading dependency for imosflm-1.0.4-3... The following package will be installed or updated: imosflm Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb dpkg: considering removing mosflm in favour of imosflm ... dpkg: no, cannot remove mosflm (--auto-deconfigure will help): imosflm depends on mosflm (= 7.0.6) mosflm is to be removed. dpkg: regarding .../imosflm_1.0.4-3_darwin-i386.deb containing imosflm: imosflm conflicts with mosflm mosflm (version 7.0.6-2) is installed. /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb (--install): conflicting packages - not installing imosflm Errors were encountered while processing: /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Failed: can't install package imosflm-1.0.4-3 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111 Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
Re: [ccp4bb] imosflm conflict with mosflm (OS X/fink 32-bit)
Remove both. On OS X, 10.6, imosflm uses the tcl/tk supplied with OS X, and the latest mosflm is in ccp4, so there is no need for any of that. Just use what is in ccp4. Sorry for this. On Jul 5, 2010, at 4:34 PM, Engin Özkan wrote: Hi everybody, I was doing a regular fink update (OS X 10.6.4, 32-bit fink) when I encountered a silly outcome, which I thought others might have observed. During the imosflm update, I get an error saying that imosflm depends on mosflm, and it also conflicts with mosflm at the same time. This was my list of mosflm-related packages: % fink list mosflm Information about 9265 packages read in 0 seconds. (i) imosflm 1:1.0.4-3 Installs mosflm GUI for use with X11 TclTk imosflm-aqua 1:1.0.4-3 Installs mosflm GUI for use with aqua TclTk i mosflm7.0.6-2X-ray data processing, large display And below is the error. A workaround is removing mosflm, and using ipmosflm from the ccp4 installation. Is any of this expected with these two packages under fink? Best, Engin The package 'imosflm' will be installed. Reading dependency for imosflm-1.0.4-3... The following package will be installed or updated: imosflm Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb dpkg: considering removing mosflm in favour of imosflm ... dpkg: no, cannot remove mosflm (--auto-deconfigure will help): imosflm depends on mosflm (= 7.0.6) mosflm is to be removed. dpkg: regarding .../imosflm_1.0.4-3_darwin-i386.deb containing imosflm: imosflm conflicts with mosflm mosflm (version 7.0.6-2) is installed. /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb (--install): conflicting packages - not installing imosflm Errors were encountered while processing: /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Failed: can't install package imosflm-1.0.4-3 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111
Re: [ccp4bb] imosflm conflict with mosflm (OS X/fink 32-bit)
Dear Harry et al: I'm sorry, I've been immersed in grant renewal/resubmission hell. I obviously screwed something up in a rush. Briefly, if you have 10.6.X, ccp4 and OS X have everything you need for a nice, fully-functioning OS X aqua imosflm gui. Bill PS: The 64-bit ccp4 and mosflm work great. On Jul 6, 2010, at 3:25 AM, Harry Powell wrote: Hi Engin This is almost certainly a Bill Scott issue, so you'll have to wait until he reads his e-mail this morning! Unfortunately, the Mosflm developers (i.e. me) have no experience of setting Fink dependencies so we can't help you. We don't use Fink for our distros of iMosflm and Mosflm, and have no plans to do so. On 5 Jul 2010, at 23:34, Engin Özkan wrote: Hi everybody, I was doing a regular fink update (OS X 10.6.4, 32-bit fink) when I encountered a silly outcome, which I thought others might have observed. During the imosflm update, I get an error saying that imosflm depends on mosflm, and it also conflicts with mosflm at the same time. This was my list of mosflm-related packages: % fink list mosflm Information about 9265 packages read in 0 seconds. (i) imosflm 1:1.0.4-3 Installs mosflm GUI for use with X11 TclTk imosflm-aqua 1:1.0.4-3 Installs mosflm GUI for use with aqua TclTk i mosflm7.0.6-2X-ray data processing, large display And below is the error. A workaround is removing mosflm, and using ipmosflm from the ccp4 installation. Is any of this expected with these two packages under fink? Best, Engin The package 'imosflm' will be installed. Reading dependency for imosflm-1.0.4-3... The following package will be installed or updated: imosflm Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb dpkg: considering removing mosflm in favour of imosflm ... dpkg: no, cannot remove mosflm (--auto-deconfigure will help): imosflm depends on mosflm (= 7.0.6) mosflm is to be removed. dpkg: regarding .../imosflm_1.0.4-3_darwin-i386.deb containing imosflm: imosflm conflicts with mosflm mosflm (version 7.0.6-2) is installed. /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb (--install): conflicting packages - not installing imosflm Errors were encountered while processing: /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Failed: can't install package imosflm-1.0.4-3 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111 Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
Re: [ccp4bb] imosflm conflict with mosflm (OS X/fink 32-bit)
Thanks for clearing that. Setting the mosflm executable to the ccp4 version, in combination with either the fink or the system wish, gives a nicely working imosflm. And thanks for the fink packages... Engin On 7/6/10 6:36 AM, William G. Scott wrote: Remove both. On OS X, 10.6, imosflm uses the tcl/tk supplied with OS X, and the latest mosflm is in ccp4, so there is no need for any of that. Just use what is in ccp4. Sorry for this. On Jul 5, 2010, at 4:34 PM, Engin Özkan wrote: Hi everybody, I was doing a regular fink update (OS X 10.6.4, 32-bit fink) when I encountered a silly outcome, which I thought others might have observed. During the imosflm update, I get an error saying that imosflm depends on mosflm, and it also conflicts with mosflm at the same time. This was my list of mosflm-related packages: % fink list mosflm Information about 9265 packages read in 0 seconds. (i) imosflm 1:1.0.4-3 Installs mosflm GUI for use with X11 TclTk imosflm-aqua 1:1.0.4-3 Installs mosflm GUI for use with aqua TclTk i mosflm7.0.6-2X-ray data processing, large display And below is the error. A workaround is removing mosflm, and using ipmosflm from the ccp4 installation. Is any of this expected with these two packages under fink? Best, Engin The package 'imosflm' will be installed. Reading dependency for imosflm-1.0.4-3... The following package will be installed or updated: imosflm Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb dpkg: considering removing mosflm in favour of imosflm ... dpkg: no, cannot remove mosflm (--auto-deconfigure will help): imosflm depends on mosflm (= 7.0.6) mosflm is to be removed. dpkg: regarding .../imosflm_1.0.4-3_darwin-i386.deb containing imosflm: imosflm conflicts with mosflm mosflm (version 7.0.6-2) is installed. /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb (--install): conflicting packages - not installing imosflm Errors were encountered while processing: /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Failed: can't install package imosflm-1.0.4-3 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111
[ccp4bb] imosflm conflict with mosflm (OS X/fink 32-bit)
Hi everybody, I was doing a regular fink update (OS X 10.6.4, 32-bit fink) when I encountered a silly outcome, which I thought others might have observed. During the imosflm update, I get an error saying that imosflm depends on mosflm, and it also conflicts with mosflm at the same time. This was my list of mosflm-related packages: % fink list mosflm Information about 9265 packages read in 0 seconds. (i) imosflm 1:1.0.4-3 Installs mosflm GUI for use with X11 TclTk imosflm-aqua 1:1.0.4-3 Installs mosflm GUI for use with aqua TclTk i mosflm7.0.6-2X-ray data processing, large display And below is the error. A workaround is removing mosflm, and using ipmosflm from the ccp4 installation. Is any of this expected with these two packages under fink? Best, Engin The package 'imosflm' will be installed. Reading dependency for imosflm-1.0.4-3... The following package will be installed or updated: imosflm Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb dpkg: considering removing mosflm in favour of imosflm ... dpkg: no, cannot remove mosflm (--auto-deconfigure will help): imosflm depends on mosflm (= 7.0.6) mosflm is to be removed. dpkg: regarding .../imosflm_1.0.4-3_darwin-i386.deb containing imosflm: imosflm conflicts with mosflm mosflm (version 7.0.6-2) is installed. /sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb (--install): conflicting packages - not installing imosflm Errors were encountered while processing: /sw/fink/dists/unstable/main/binary-darwin-i386/sci/imosflm_1.0.4-3_darwin-i386.deb ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 Failed: can't install package imosflm-1.0.4-3 -- Engin Özkan Post-doctoral Scholar Laboratory of K. Christopher Garcia Howard Hughes Medical Institute Dept of Molecular and Cellular Physiology 279 Campus Drive, Beckman Center B173 Stanford School of Medicine Stanford, CA 94305 ph: (650)-498-7111
