Hi Bill,
First of all I would try to completely uninstall (via fink) both ccp4 and
coot. In fact the problem is not the location of the programs per se, but
the conflict between different versions of the same program. Fink can
update the softwares, but not when you rebuild the whole system.
Anyway, the latest release of ccp4 suite (6.3.0) doesn't require fink and
you can install the entire package (coot included) by downloading the .dmg
file from ccp4 website. Moreover, if remember correctly, ccp4 6.3.0 doesn't
need X11, too.
So, you will be safe proceeding this way.
Marco
Il giorno giovedì 6 settembre 2012, William N. Zagotta zago...@uw.edu ha
scritto:
I decided to upgrade my MacBook Pro to OS X 8.0 (previously 10.6), and
update my coot and CCP4 programs at the same time (now seems like a bad
idea). I use the precompiled library from the Scott Lab, so I followed the
directions on his website. I did the following:
Installed new X11 (from Xquartz)
Installed Command Line Tools (OS X Mountain Lion) for Xcode - August
2012
curl -O
http://psbmini.ucsc.edu/~wgscott/downloads/fink_for_10.8_64bit_base_install_aptsources_sw.tgz
sudo mv fink_for_10.8_64bit_base_install_aptsources_sw.tgz /.
sudo tar xvfz fink_for_10.8_64bit_base_install_aptsources_sw.tgz
source /sw/bin/init.sh
fink selfupdate
fink scanpackages
sudo apt-get update
sudo apt-get dist-upgrade
sudo apt-get install coot ccp4
But now Fink is in the /sw directory instead of the /sw64 directory, and
the programs like coot seem to only be in the /sw64/bin directory. If I
try to run coot after sourcing /sw/bin/init.sh it cannot find coot (because
it isn't there), and if I source /sw64/bin/init.sh it runs the older
version of coot. What am I do wrong? Should the programs be in /sw or
/sw64? Should I delete old /sw64 directory?
BTW I got an error message during the installation that Err
http://psbmini.ucsc.edu stable/main gcc46-shlibs 4.6.3-1000 404 Not Found
Sorry for the dumb question.
Bill
