Re: [ccp4bb] COOT crash in ccp4i2 - Error in wrapper coot_rebuild 0.0

[Harry Powell]

I hadn’t noticed until just now, but this also happens on Linux machines at 
SLAC - 

> Distributor ID:   Debian
> Description:  Debian GNU/Linux 10 (buster)
> Release:  10
> Codename: buster

:-(

Harry


> On 29 Mar 2023, at 15:02, Joseph Cockburn  wrote:
> 
> Dear BB,
> Quite a few of my students are having problems when they use COOT through 
> CCP4i2. COOT crashes, and throws the following error:
>  
> “- ERROR - Ccoot_rebuild:56 Error in wrapper coot_rebuild 0.0:: External 
> process exited”
>  
> (see attached screenshot).
> These are undergrad students who have installed the latest version of CCP4i2 
> onto their own machines. They are working through a tutorial on molecular 
> replacement, model rebuilding and refinement. They get this error when they 
> run COOT after REFMAC. This fault has occurred on both mac and windows 
> machines.
> Does anyone know how to fix this?
> Kind regards,
> Joe
>  
>  
> --
> Dr Joseph J B Cockburn DPhil
> Program Leader, Biochemistry and Medical Biochemistry
> Group Leader and Lecturer in X-ray Crystallography
> The Astbury Centre for Structural and Molecular Biology
> School of Molecular and Cellular Biology
> Faculty of Biological Sciences
> University of Leeds
> Leeds LS2 9JT
> UK
> +44 (0)113 3430758
>  
> Sometimes I need to send emails in the evenings or at weekends, but I don’t 
> expect a reply outside of your normal working hours.
>  
> 
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> 
> 



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[ccp4bb] PhD studentship - Structural and Computational Studies of transcription factor interactions in Multiple Myeloma - University of Sussex

[Erika Mancini]

Dear all,

We are seeking a motivated and experienced PhD student to join our team in the 
Department of Biochemistry at the University of Sussex. The studentship will 
focus on the structural and functional characterization of transcription 
factors involved in Multiple Myeloma.

The student will use a combination of biochemical, biophysical, and structural 
biology techniques to study the interaction between proteins and DNA. The 
student will also use computational modelling to study the impact of DNA 
interactions on the expression of target genes.

The successful candidate will have a strong background in molecular biology and 
biochemistry and experience in protein expression and purification is 
essential. Experience in structural biology and computational modelling is 
desirable but not necessary. The student will be able to work independently and 
as part of a team. This is a collaboration between the Department of 
Biochemistry (Dr Erika Mancini) and the Brighton and Sussex Medical School (Dr 
Simon Mitchell) at the University of Sussex.


The application deadline is Friday 28th April 2023 for a starting date in 
October 2023.

If you have any questions about the project, don't hesitate to contact myself 
at erika.manc...@sussex.ac.uk

Kind regards
Erika

[cidimage001.png@01D85B27.CB477660]



Dr Erika Mancini PhD

Associate Professor in Biomedical Structural Biology

Director of Research Staff Development

Office 3C18b, JMS Building

School of Life Sciences

University of Sussex
Falmer, Brighton, BN1 9QG



Tel: +44 (0)1273 877681

Email I Staff 
profileI Lab 
website I 
Twitter I 
ORCID I 
LinkedIn




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[ccp4bb] Just a reminder

[Tom Peat]

Hello All,

The early bird registration comes to an end for the IUCr 2023 meeting this year 
in Melbourne at the end of March (very soon). For those that would like the 
discounted rate for registration, it is time to take the plunge.
https://www.iucr.org/iucr/cong/2023-iucr-xxvi
https://iucr2023.org/

cheers, tom

Tom Peat, PhD
one of many on the committee...



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[ccp4bb] Postdoctoral Fellow - Genentech, Structural Biology, Masureel Lab

[Yoana Dimitrova]

Dear all,

We have an opening for a Postdoc position in the Masureel lab within the
Membrane Protein group in the Department of Structural Biology at
Genentech! We are looking for a creative and driven Postdoctoral Fellow to
perform basic research related to membrane protein complexes. You’ll have
access to exceptional resources and support to perform cutting-edge
membrane protein research while being exposed to drug discovery in a
world-class environment. Interested or know anyone who might be? Please
feel free to reach out or apply directly!

Postdoctoral Fellow - Structural Biology, Masureel Lab

 | LinkedIn

 | Twitter 

-- 
*Yoana Dimitrova*
Sr Principal Scientist
Genentech, Department of Structural Biology
1 DNA Way, MS: 27
South San Francisco, CA 94080
(cell) 650 534 5216



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