Re: [COOT] Debian AMD64 & Coot

2009-10-26 Thread Paul Emsley

Bryan Krantz wrote:
Does anyone know of the proper patches to apply to the ia386-libs to 
allow Coot to run properly on Debian Lenny AMD64? It appears that the 
32bit libraries under ia386 have serious flaws and issues.


I would advise that you build 64 bit binaries yourself.  I develop Coot 
on 64 bit Ubuntu using build-it-gtk2-simple.  It should just build out 
the box.  You may need to install these beforehand:


  patch
  m4
  g++
  libxext-dev
  libxmu-dev
  libxt-dev
  libc6-dev
  libglu1-mesa-dev
  mesa-common-dev
  libgtk2.0-dev
  libgnomecanvas2-dev

I'm guessing that the dependencies are the same as Ubuntu.

Paul.


[COOT] Debian AMD64 & Coot

2009-10-26 Thread Bryan Krantz
Does anyone know of the proper patches to apply to the ia386-libs to allow
Coot to run properly on Debian Lenny AMD64? It appears that the 32bit
libraries under ia386 have serious flaws and issues.

My ccp4 install went as expected but Coot hangs:

bakra...@octamer:~/Desktop/ccp4/Coot-0.5.2/bin$ sh coot
COOT_PREFIX is /home/bakrantz/Desktop/ccp4/Coot-0.5.2
./coot-real
Acquiring application resources from
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/cootrc
INFO:: splash_screen_pixmap_dir
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/pixmaps

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64

(coot-real:10437): Gtk-WARNING **:
/usr/lib/gtk-2.0/2.10.0/engines/libclearlooks.so: wrong ELF class:
ELFCLASS64
INFO:: Colours file:
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/colours.def loaded
There are 116 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/list/mon_lib_list.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/a/ALA.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/a/ASP.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/a/ASN.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/c/CYS.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/g/GLN.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/g/GLY.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/g/GLU.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/p/PHE.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/h/HIS.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/i/ILE.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/l/LYS.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/l/LEU.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/m/MET.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/m/MSE.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/p/PRO.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/a/ARG.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/s/SER.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/t/THR.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/v/VAL.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/t/TRP.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/t/TYR.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/p/PO4.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/s/SO4.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/coot/lib/data/monomers/g/GOL.cif
There are 2 data in
/home/bakrantz/Desktop/ccp4/Coot-0.5.2/share/c