Re: [deal.II] Re: Cluster installation error with symengine library

2022-02-22 Thread Timo Heister 
Do you have $SYMENGINE_DIR defined in your environment? If yes, "unset
SYMENGINE_DIR" might help.

On Tue, Feb 22, 2022 at 10:08 AM Stephanie Sparks  wrote:
>
> Timo,
>
> I did try to install from scratch and I'm getting the same error:
>
> Could not find the symengine library!
>
> Please ensure that a suitable symengine library is installed on your computer.
>
> I turned off symengine in the candi.cfg file and deleted the installation 
> library so I'm not sure what else to do.
>
> Thanks,
> Stephanie
> On Tuesday, February 15, 2022 at 1:42:34 PM UTC-7 Timo Heister wrote:
>>
>> Sure, the easiest is to start over and delete the whole installation 
>> directory before you run Candi.
>> You can try if it is enough to delete tmp/build/ but I am not sure.
>>
>> On Tue, Feb 15, 2022, 13:49 Stephanie Sparks  wrote:
>>>
>>> Hi Timo,
>>>
>>> I did use candi to re-install without symengine and then when attempting to 
>>> install deal.ii I got an error that symengine library could not be found. 
>>> Is there a way to configure it such that symengine is not necessary for 
>>> deal.ii?
>>>
>>> Thanks,
>>> Stephanie
>>>
>>> On Tuesday, February 8, 2022 at 8:05:01 AM UTC-7 Timo Heister wrote:

 Stephanie,

 I think you likely don't need some fine, am i right? Just comment out the 
 line for it in the candi.cfg and rerun the setup (you might need to delete 
 the tmp directory).


 On Tue, Feb 8, 2022, 10:01 Raghunandan Pratoori  wrote:
>
> Hi Stephanie,
>
> I use a singularity container with deal.ii on my university cluster. I 
> found it to be much simpler and working on any other cluster tried 
> without any problems. I suggest you try that as it is a more reliable 
> solution.
> Also, if needed, I can give you access to the singularity container I 
> built on Ubuntu 20.04 with deal.ii v9.3.0
>
> Best,
> Raghunandan.
>
> On Tuesday, February 8, 2022 at 8:30:33 AM UTC-6 sasp...@asu.edu wrote:
>>
>> Hello,
>>
>> I am trying to install deal.ii on my university cluster and have been 
>> successful up to this point; however, when I attempt to run examples I 
>> get the following error:
>>
>> ./step-1: error while loading shared libraries: libsymengine.so.0.7: 
>> cannot open shared object file: No such file or directory
>>
>> I found an entry in the FAQ regarding similar problems with linking 
>> PETSc and attempted to use that fix but I'm still running into the same 
>> issue.
>>
>> Any help would be greatly appreciated.
>>
>> Thanks,
>> Stephanie
>
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>>>
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>
> --
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-- 
Timo Heister
http://www.math.clemson.edu/~heister/

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Re: [deal.II] Re: Cluster installation error with symengine library

2022-02-22 Thread Stephanie Sparks 
Timo,

I did try to install from scratch and I'm getting the same error:

*Could not find the symengine library!*

*Please ensure that a suitable symengine library is installed on your 
computer.*

I turned off symengine in the candi.cfg file and deleted the installation 
library so I'm not sure what else to do. 

Thanks,
Stephanie
On Tuesday, February 15, 2022 at 1:42:34 PM UTC-7 Timo Heister wrote:

> Sure, the easiest is to start over and delete the whole installation 
> directory before you run Candi.
> You can try if it is enough to delete tmp/build/ but I am not sure.
>
> On Tue, Feb 15, 2022, 13:49 Stephanie Sparks  wrote:
>
>> Hi Timo,
>>
>> I did use candi to re-install without symengine and then when attempting 
>> to install deal.ii I got an error that symengine library could not be 
>> found. Is there a way to configure it such that symengine is not necessary 
>> for deal.ii?
>>
>> Thanks,
>> Stephanie
>>
>> On Tuesday, February 8, 2022 at 8:05:01 AM UTC-7 Timo Heister wrote:
>>
>>> Stephanie,
>>>
>>> I think you likely don't need some fine, am i right? Just comment out 
>>> the line for it in the candi.cfg and rerun the setup (you might need to 
>>> delete the tmp directory).
>>>
>>>
>>> On Tue, Feb 8, 2022, 10:01 Raghunandan Pratoori  
>>> wrote:
>>>
 Hi Stephanie,

 I use a singularity container with deal.ii on my university cluster. I 
 found it to be much simpler and working on any other cluster tried without 
 any problems. I suggest you try that as it is a more reliable solution.
 Also, if needed, I can give you access to the singularity container I 
 built on Ubuntu 20.04 with deal.ii v9.3.0

 Best,
 Raghunandan.

 On Tuesday, February 8, 2022 at 8:30:33 AM UTC-6 sasp...@asu.edu wrote:

> Hello,
>
> I am trying to install deal.ii on my university cluster and have been 
> successful up to this point; however, when I attempt to run examples I 
> get 
> the following error:
>
> ./step-1: error while loading shared libraries: libsymengine.so.0.7: 
> cannot open shared object file: No such file or directory
>
> I found an entry in the FAQ regarding similar problems with linking 
> PETSc and attempted to use that fix but I'm still running into the same 
> issue.
>
> Any help would be greatly appreciated.
>
> Thanks,
> Stephanie
>
 -- 
 The deal.II project is located at http://www.dealii.org/
 For mailing list/forum options, see 
 https://groups.google.com/d/forum/dealii?hl=en
 --- 
 You received this message because you are subscribed to the Google 
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 .

>>> -- 
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see 
>> https://groups.google.com/d/forum/dealii?hl=en
>> --- 
>> You received this message because you are subscribed to the Google Groups 
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to dealii+un...@googlegroups.com.
>>
> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/dealii/763fb27e-1523-40b3-9b2a-d7d491053855n%40googlegroups.com
>>  
>> 
>> .
>>
>

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Re: [deal.II] Re: Cluster installation error with symengine library

2022-02-15 Thread Timo Heister 
Sure, the easiest is to start over and delete the whole installation
directory before you run Candi.
You can try if it is enough to delete tmp/build/ but I am not sure.

On Tue, Feb 15, 2022, 13:49 Stephanie Sparks  wrote:

> Hi Timo,
>
> I did use candi to re-install without symengine and then when attempting
> to install deal.ii I got an error that symengine library could not be
> found. Is there a way to configure it such that symengine is not necessary
> for deal.ii?
>
> Thanks,
> Stephanie
>
> On Tuesday, February 8, 2022 at 8:05:01 AM UTC-7 Timo Heister wrote:
>
>> Stephanie,
>>
>> I think you likely don't need some fine, am i right? Just comment out the
>> line for it in the candi.cfg and rerun the setup (you might need to delete
>> the tmp directory).
>>
>>
>> On Tue, Feb 8, 2022, 10:01 Raghunandan Pratoori  wrote:
>>
>>> Hi Stephanie,
>>>
>>> I use a singularity container with deal.ii on my university cluster. I
>>> found it to be much simpler and working on any other cluster tried without
>>> any problems. I suggest you try that as it is a more reliable solution.
>>> Also, if needed, I can give you access to the singularity container I
>>> built on Ubuntu 20.04 with deal.ii v9.3.0
>>>
>>> Best,
>>> Raghunandan.
>>>
>>> On Tuesday, February 8, 2022 at 8:30:33 AM UTC-6 sasp...@asu.edu wrote:
>>>
 Hello,

 I am trying to install deal.ii on my university cluster and have been
 successful up to this point; however, when I attempt to run examples I get
 the following error:

 ./step-1: error while loading shared libraries: libsymengine.so.0.7:
 cannot open shared object file: No such file or directory

 I found an entry in the FAQ regarding similar problems with linking
 PETSc and attempted to use that fix but I'm still running into the same
 issue.

 Any help would be greatly appreciated.

 Thanks,
 Stephanie

>>> --
>>> The deal.II project is located at http://www.dealii.org/
>>> For mailing list/forum options, see
>>> https://groups.google.com/d/forum/dealii?hl=en
>>> ---
>>> You received this message because you are subscribed to the Google
>>> Groups "deal.II User Group" group.
>>> To unsubscribe from this group and stop receiving emails from it, send
>>> an email to dealii+un...@googlegroups.com.
>>> To view this discussion on the web visit
>>> https://groups.google.com/d/msgid/dealii/61bc9eb6-a392-4b3a-836e-37764a389b0an%40googlegroups.com
>>> 
>>> .
>>>
>> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
> You received this message because you are subscribed to the Google Groups
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> 
> .
>

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Re: [deal.II] Re: Cluster installation error with symengine library

2022-02-15 Thread Stephanie Sparks 
Hi Timo,

I did use candi to re-install without symengine and then when attempting to 
install deal.ii I got an error that symengine library could not be found. 
Is there a way to configure it such that symengine is not necessary for 
deal.ii?

Thanks,
Stephanie

On Tuesday, February 8, 2022 at 8:05:01 AM UTC-7 Timo Heister wrote:

> Stephanie,
>
> I think you likely don't need some fine, am i right? Just comment out the 
> line for it in the candi.cfg and rerun the setup (you might need to delete 
> the tmp directory).
>
>
> On Tue, Feb 8, 2022, 10:01 Raghunandan Pratoori  wrote:
>
>> Hi Stephanie,
>>
>> I use a singularity container with deal.ii on my university cluster. I 
>> found it to be much simpler and working on any other cluster tried without 
>> any problems. I suggest you try that as it is a more reliable solution.
>> Also, if needed, I can give you access to the singularity container I 
>> built on Ubuntu 20.04 with deal.ii v9.3.0
>>
>> Best,
>> Raghunandan.
>>
>> On Tuesday, February 8, 2022 at 8:30:33 AM UTC-6 sasp...@asu.edu wrote:
>>
>>> Hello,
>>>
>>> I am trying to install deal.ii on my university cluster and have been 
>>> successful up to this point; however, when I attempt to run examples I get 
>>> the following error:
>>>
>>> ./step-1: error while loading shared libraries: libsymengine.so.0.7: 
>>> cannot open shared object file: No such file or directory
>>>
>>> I found an entry in the FAQ regarding similar problems with linking 
>>> PETSc and attempted to use that fix but I'm still running into the same 
>>> issue.
>>>
>>> Any help would be greatly appreciated.
>>>
>>> Thanks,
>>> Stephanie
>>>
>> -- 
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see 
>> https://groups.google.com/d/forum/dealii?hl=en
>> --- 
>> You received this message because you are subscribed to the Google Groups 
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to dealii+un...@googlegroups.com.
>> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/dealii/61bc9eb6-a392-4b3a-836e-37764a389b0an%40googlegroups.com
>>  
>> 
>> .
>>
>

-- 
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Re: [deal.II] Re: Cluster installation error with symengine library

2022-02-08 Thread Timo Heister 
Stephanie,

I think you likely don't need some fine, am i right? Just comment out the
line for it in the candi.cfg and rerun the setup (you might need to delete
the tmp directory).


On Tue, Feb 8, 2022, 10:01 Raghunandan Pratoori  wrote:

> Hi Stephanie,
>
> I use a singularity container with deal.ii on my university cluster. I
> found it to be much simpler and working on any other cluster tried without
> any problems. I suggest you try that as it is a more reliable solution.
> Also, if needed, I can give you access to the singularity container I
> built on Ubuntu 20.04 with deal.ii v9.3.0
>
> Best,
> Raghunandan.
>
> On Tuesday, February 8, 2022 at 8:30:33 AM UTC-6 sasp...@asu.edu wrote:
>
>> Hello,
>>
>> I am trying to install deal.ii on my university cluster and have been
>> successful up to this point; however, when I attempt to run examples I get
>> the following error:
>>
>> ./step-1: error while loading shared libraries: libsymengine.so.0.7:
>> cannot open shared object file: No such file or directory
>>
>> I found an entry in the FAQ regarding similar problems with linking PETSc
>> and attempted to use that fix but I'm still running into the same issue.
>>
>> Any help would be greatly appreciated.
>>
>> Thanks,
>> Stephanie
>>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
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> You received this message because you are subscribed to the Google Groups
> "deal.II User Group" group.
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> To view this discussion on the web visit
> https://groups.google.com/d/msgid/dealii/61bc9eb6-a392-4b3a-836e-37764a389b0an%40googlegroups.com
> 
> .
>

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