Ok, I will contact upstream.
Best Regards
Aleksandar Zlicic
From: Charles Plessy [ple...@debian.org]
Sent: Wednesday, July 02, 2014 3:16 PM
To: Aleksandar Zlicic; 753...@bugs.debian.org
Subject: Re: [Debian-med-packaging] Bug#753485: samtools: python-pysam FTBFS on
mips/mipsel due to issues in samtools
Le Wed, Jul 02, 2014 at 12:30:24PM +, Aleksandar Zlicic a écrit :
Package: samtools
Version: 0.1.19-1
Tags: sid patch
Severity: important
User: debian-mips-dev-disc...@lists.alioth.debian.org
Usertags: mips-patch
'python-pysam' package FTBFS on mips/mipsel due to issues in 'samtools'
package.
Build log for 'python-pysam' on mips:
https://buildd.debian.org/status/fetch.php?pkg=python-pysamarch=mipsver=0.7.7-1stamp=1397894446
Build log for 'python-pysam' on mipsel:
https://buildd.debian.org/status/fetch.php?pkg=python-pysamarch=mipselver=0.7.7-1stamp=1397887877
Output of samtools executable from samtools package is used as a reference
during tests in python-pysam (its output is compared with output from
pysam python module), but samtools has both unaligned memory access
and system endianness issues.
I have attached patches that fix this. With these patches applied to samtools,
python-pysam builds fine.
Hi Aleksandar,
I admit that I am a bit worried of applying a patch that I am not able
to review. Could you ask upstream (https://github.com/samtools/samtools)
to have a look ?
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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