Processed: Re: [Debian-med-packaging] Bug#836230: genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6)
Processing commands for cont...@bugs.debian.org: > severity 836230 normal Bug #836230 [src:genometools] genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6) Severity set to 'normal' from 'serious' > retitle 836230 FTBFS in a low memory machine with poor error message Bug #836230 [src:genometools] genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6) Changed Bug title to 'FTBFS in a low memory machine with poor error message' from 'genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6)'. > thanks Stopping processing here. Please contact me if you need assistance. -- 836230: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836230 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#836230: [Debian-med-packaging] Bug#836230: genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6)
severity 836230 normal retitle 836230 FTBFS in a low memory machine with poor error message thanks On Wed, Aug 31, 2016 at 10:10:40PM +0100, Sascha Steinbiss wrote: > > I tried to build this package in stretch with "dpkg-buildpackage -A" > > (which is what the "Arch: all" autobuilder would do to build it) > > but it failed: > […] > > a2x: ERROR: "xsltproc" --stringparam callout.graphics 0 --stringparam > > navig.graphics 0 --stringparam admon.textlabel 1 --stringparam > > admon.graphics 0 "/etc/asciidoc/docbook-xsl/manpage.xsl" > > "/<>/genometools-1.5.9+ds/doc/manpages/gt.xml" returned non-zero > > exit > > Unfortunately, I can not reproduce this. For me the package builds with no > problem (-A and -B with gbp-buildpackage and cowbuilder in a freshly updated > stretch chroot). Build logs can be found at > http://dropbox.tetrinetsucht.de/debian/ (too large for paste.debian.net). > > > This used to work in the past, so I would look for build-dependencies > > which may have changed their behaviour recently. > > Both docbook-xsl and asciidoc, which may be the relevant build-deps here, > didn’t have any recent uploads. > > I am wondering if anyone may have any hints? Sorry, I thought this was easily reproducible because it happened in two different machines. But now I see that the two machines have 768 MB of RAM. I'm now building on machines with more memory, and so far it does not seem to fail when I have 3GB of RAM. To reproduce, please try building on a machine with only 768 MB of RAM. If that's the reason for the build failure, then the problem is that the build does not say "out of memory" or anything like that. Instead it says "exit status 6" which does not help very much to know what exactly went wrong. Thanks.
Bug#836230: [Debian-med-packaging] Bug#836230: genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6)
Hi Santiago, thanks for reporting this. > I tried to build this package in stretch with "dpkg-buildpackage -A" > (which is what the "Arch: all" autobuilder would do to build it) > but it failed: […] > a2x: ERROR: "xsltproc" --stringparam callout.graphics 0 --stringparam > navig.graphics 0 --stringparam admon.textlabel 1 --stringparam admon.graphics > 0 "/etc/asciidoc/docbook-xsl/manpage.xsl" > "/<>/genometools-1.5.9+ds/doc/manpages/gt.xml" returned non-zero > exit Unfortunately, I can not reproduce this. For me the package builds with no problem (-A and -B with gbp-buildpackage and cowbuilder in a freshly updated stretch chroot). Build logs can be found at http://dropbox.tetrinetsucht.de/debian/ (too large for paste.debian.net). > This used to work in the past, so I would look for build-dependencies > which may have changed their behaviour recently. Both docbook-xsl and asciidoc, which may be the relevant build-deps here, didn’t have any recent uploads. I am wondering if anyone may have any hints? Cheers Sascha signature.asc Description: Message signed with OpenPGP using GPGMail
Bug#836230: genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6)
Package: src:genometools Version: 1.5.9+ds-2 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: [...] debian/rules build-indep dh build-indep --with python2 dh_testdir -i dh_update_autotools_config -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/<>/genometools-1.5.9+ds' faketime -f "`TZ=UTC date -d @1469271266 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make -j1 useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make[2]: Entering directory '/<>/genometools-1.5.9+ds' [create obj/gt_config.h] [compile alphabet.o] [compile array.o] [... snipped ...] cp -r gtdata /<>/genometools-1.5.9+ds/debian/tmp/usr/bin test -d /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core \ || mkdir -p /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core cp src/core/*_api.h /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core test -d /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended \ || mkdir -p /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended cp src/extended/*_api.h /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended test -d /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch \ || mkdir -p /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch cp src/annotationsketch/*_api.h \ /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch test -d /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr \ || mkdir -p /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr cp src/ltr/*_api.h /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr cp obj/gt_config.h /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools cp src/genometools.h /<>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools test -d /<>/genometools-1.5.9+ds/debian/tmp/usr/lib || mkdir -p /<>/genometools-1.5.9+ds/debian/tmp/usr/lib cp lib/libgenometools.a /<>/genometools-1.5.9+ds/debian/tmp/usr/lib cp lib/libgenometools.so.0 /<>/genometools-1.5.9+ds/debian/tmp/usr/lib ln -fs /<>/genometools-1.5.9+ds/debian/tmp/usr/lib/libgenometools.so.0 /<>/genometools-1.5.9+ds/debian/tmp/usr/lib/libgenometools.so [build config script install] sed -e 's!@CC@!cc!' -e 's!@CFLAGS@!-g -O2 -fdebug-prefix-map=/<>/genometools-1.5.9+ds=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@CPPFLAGS@!-I\\"/<>/genometools-1.5.9+ds/debian/tmp/usr/include\\" -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE!' \ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -fdebug-prefix-map=/<>/genometools-1.5.9+ds=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@LDFLAGS@!-L/<>/genometools-1.5.9+ds/debian/tmp/usr/lib -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \ -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \ -e 's!@BUILDSTAMP@!"2016-08-31 16:47:11"!' \ -e 's!@SYSTEM@!Linux!' /<>/genometools-1.5.9+ds/debian/tmp/usr/bin/genometools-config chmod 755 /<>/genometools-1.5.9+ds/debian/tmp/usr/bin/genometools-config bin/gt -createman /tmp/gtmanpages warning: skipping tool 'mgth' in iterator (not a GtTool object) warning: skipping tool 'mkfmindex' in iterator (not a GtTool object) warning: skipping tool 'suffixerator' in iterator (not a GtTool object) warning: skipping tool 'chkintegrity' in iterator (not a GtTool object) warning: skipping tool 'chksearch' in iterator (not a GtTool object) warning: skipping tool 'mkctxmap' in iterator (not a GtTool object) warning: skipping tool 'mkindex' in iterator (not a GtTool object) warning: skipping tool 'trsuftab' in iterator (not a GtTool object) test -d /<>/genometools-1.5.9+ds/doc/manpages || mkdir -p /<>/genometools-1.5.9+ds/doc/manpages rm -f /<>/genometools-1.5.9+ds/doc/manpages/* scripts/create_manpages /tmp/gtmanpages /<>/genometools-1.5.9+ds/doc/manpages .a2x: WARNING: --destination-dir option is only applicable to HTML based outputs a2x: ERROR: "xsltproc" --stringparam callout.graphics 0 --stringparam navig.graphics 0 --stringparam admon.textlabel 1 --stringparam admon.graphics 0 "/etc/asciidoc/docbook-xsl/manpage.xsl" "/<>/genometools-1.5.9+ds/doc/manpages/gt.xml" returned
