[med-svn] r16048 - trunk/packages/gnuhealth/trunk/debian

2014-02-17 Thread Emilien Klein
Author: e2jk-guest
Date: 2014-02-17 08:01:12 + (Mon, 17 Feb 2014)
New Revision: 16048

Modified:
   trunk/packages/gnuhealth/trunk/debian/changelog
Log:
Updating d/changelog to upload to unstable. Yay!


Modified: trunk/packages/gnuhealth/trunk/debian/changelog
===
--- trunk/packages/gnuhealth/trunk/debian/changelog 2014-02-14 13:47:41 UTC 
(rev 16047)
+++ trunk/packages/gnuhealth/trunk/debian/changelog 2014-02-17 08:01:12 UTC 
(rev 16048)
@@ -1,4 +1,4 @@
-gnuhealth (2.4.0-1) experimental; urgency=low
+gnuhealth (2.4.0-1) unstable; urgency=low
 
   [ Emilien Klein ]
   * New upstream release
@@ -10,7 +10,7 @@
   * Priority: optional
   * cme fix dpkg-control
 
- -- Emilien Klein emilien+deb...@klein.st  Mon, 27 Jan 2014 08:27:26 +0100
+ -- Emilien Klein emilien+deb...@klein.st  Mon, 17 Feb 2014 08:57:30 +0100
 
 gnuhealth (2.0.0-2) experimental; urgency=low
 


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[med-svn] r16049 - trunk/packages/gnuhealth/trunk/debian

2014-02-17 Thread Andreas Tille
Author: tille
Date: 2014-02-17 08:13:29 + (Mon, 17 Feb 2014)
New Revision: 16049

Modified:
   trunk/packages/gnuhealth/trunk/debian/changelog
Log:
Create new changelog entry for gnuhealth in unstable


Modified: trunk/packages/gnuhealth/trunk/debian/changelog
===
--- trunk/packages/gnuhealth/trunk/debian/changelog 2014-02-17 08:01:12 UTC 
(rev 16048)
+++ trunk/packages/gnuhealth/trunk/debian/changelog 2014-02-17 08:13:29 UTC 
(rev 16049)
@@ -1,5 +1,11 @@
-gnuhealth (2.4.0-1) unstable; urgency=low
+gnuhealth (2.4.0-2) unstable; urgency=low
 
+  * Upload to unstable
+
+ -- Emilien Klein emilien+deb...@klein.st  Mon, 17 Feb 2014 08:57:30 +0100
+
+gnuhealth (2.4.0-1) experimental; urgency=low
+
   [ Emilien Klein ]
   * New upstream release
   * debian/control:
@@ -10,7 +16,7 @@
   * Priority: optional
   * cme fix dpkg-control
 
- -- Emilien Klein emilien+deb...@klein.st  Mon, 17 Feb 2014 08:57:30 +0100
+ -- Emilien Klein emilien+deb...@klein.st  Mon, 27 Jan 2014 08:27:26 +0100
 
 gnuhealth (2.0.0-2) experimental; urgency=low
 


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[med-svn] r16050 - in trunk/packages/orthanc/trunk/debian: . configuration docs patches

2014-02-17 Thread Sebastien Jodogne
Author: jodogne-guest
Date: 2014-02-17 10:27:33 + (Mon, 17 Feb 2014)
New Revision: 16050

Removed:
   trunk/packages/orthanc/trunk/debian/patches/check-endianness
   trunk/packages/orthanc/trunk/debian/patches/doxygen-jquery
Modified:
   trunk/packages/orthanc/trunk/debian/changelog
   trunk/packages/orthanc/trunk/debian/configuration/orthanc.json
   trunk/packages/orthanc/trunk/debian/docs/Orthanc.1
   trunk/packages/orthanc/trunk/debian/patches/series
   trunk/packages/orthanc/trunk/debian/rules
   trunk/packages/orthanc/trunk/debian/watch
Log:
new upstream release of Orthanc: 0.7.3

Modified: trunk/packages/orthanc/trunk/debian/changelog
===
--- trunk/packages/orthanc/trunk/debian/changelog   2014-02-17 08:13:29 UTC 
(rev 16049)
+++ trunk/packages/orthanc/trunk/debian/changelog   2014-02-17 10:27:33 UTC 
(rev 16050)
@@ -1,8 +1,10 @@
-orthanc (0.7.2-2) UNRELEASED; urgency=low
+orthanc (0.7.3-1) UNRELEASED; urgency=low
 
+  * New upstream version: 0.7.3
   * Minimal version for libgoogle-glog is 0.3.3. Closes: #736845
+  * Change from Google Code to GitHub
 
- -- Sebastien Jodogne s.jodo...@gmail.com  Mon, 27 Jan 2014 14:33:41 +0100
+ -- Sebastien Jodogne s.jodo...@gmail.com  Mon, 17 Feb 2014 10:28:34 +0100
 
 orthanc (0.7.2-1) unstable; urgency=low
 

Modified: trunk/packages/orthanc/trunk/debian/configuration/orthanc.json
===
--- trunk/packages/orthanc/trunk/debian/configuration/orthanc.json  
2014-02-17 08:13:29 UTC (rev 16049)
+++ trunk/packages/orthanc/trunk/debian/configuration/orthanc.json  
2014-02-17 10:27:33 UTC (rev 16050)
@@ -1,136 +1,164 @@
-{
-  /**
-   * General configuration of Orthanc
-   **/
-
-  // The logical name of this instance of Orthanc. This one is
-  // displayed in Orthanc Explorer and at the URI /system.
-  Name : Orthanc,
-
-  // Path to the directory that holds the heavyweight files
-  // (i.e. the raw DICOM instances)
-  StorageDirectory : /var/lib/orthanc/db-v3,
-
-  // Path to the directory that holds the SQLite index (if unset,
-  // the value of StorageDirectory is used). This index could be
-  // stored on a RAM-drive or a SSD device for performance reasons.
-  IndexDirectory : /var/lib/orthanc/db-v3,
-
-  // Enable the transparent compression of the DICOM instances
-  StorageCompression : false,
-
-  // Maximum size of the storage in MB (a value of 0 indicates no
-  // limit on the storage size)
-  MaximumStorageSize : 0,
-
-  // Maximum number of patients that can be stored at a given time
-  // in the storage (a value of 0 indicates no limit on the number
-  // of patients)
-  MaximumPatientCount : 0,
-  
-  // List of paths to the custom Lua scripts to load into this
-  // instance of Orthanc
-  LuaScripts : [
-  ],
-
-
-
-  /**
-   * Configuration of the HTTP server
-   **/
-
-  // HTTP port for the REST services and for the GUI
-  HttpPort : 8042,
-
-
-
-  /**
-   * Configuration of the DICOM server
-   **/
-
-  // The DICOM Application Entity Title
-  DicomAet : ORTHANC,
-
-  // Check whether the called AET corresponds during a DICOM request
-  DicomCheckCalledAet : false,
-
-  // The DICOM port
-  DicomPort : 4242,
-
-
-
-  /**
-   * Security-related options for the HTTP server
-   **/
-
-  // Whether remote hosts can connect to the HTTP server
-  RemoteAccessAllowed : false,
-
-  // Whether or not SSL is enabled
-  SslEnabled : false,
-
-  // Path to the SSL certificate (meaningful only if SSL is enabled)
-  SslCertificate : certificate.pem,
-
-  // Whether or not the password protection is enabled
-  AuthenticationEnabled : false,
-
-  // The list of the registered users. Because Orthanc uses HTTP
-  // Basic Authentication, the passwords are stored as plain text.
-  RegisteredUsers : {
-// alice : alicePassword
-  },
-
-
-
-  /**
-   * Network topology
-   **/
-
-  // The list of the known DICOM modalities
-  DicomModalities : {
-/**
- * Uncommenting the following line would enable Orthanc to
- * connect to an instance of the storescp open-source DICOM
- * store (shipped in the DCMTK distribution) started by the
- * command line storescp 2000.
- **/
-// sample : [ STORESCP, localhost, 2000 ]
-
-/**
- * A fourth parameter is available to enable patches for a
- * specific PACS manufacturer. The allowed values are currently
- * Generic (default value), ClearCanvas and MedInria. This
- * parameter is case-sensitive.
- **/
-// clearcanvas : [ CLEARCANVAS, 192.168.1.1, 104, ClearCanvas ]
-  },
-
-  // The list of the known Orthanc peers
-  OrthancPeers : {
-/**
- * Each line gives the base URL of an Orthanc peer, possibly
- * followed by the username/password pair (if the password
- * protection is enabled on the peer).
- **/
-// peer  : [ http://localhost:8043/;, alice, alicePassword ]
-// peer2 : [ http://localhost:8044/; ]
-  },

[med-svn] [python-csb] 01/03: Applying patch provided by Dmitry Shachnev to fix tests and some dependencies (738962)

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a commit to branch master
in repository python-csb.

commit fe633e92c5ddd2513300060a24f873265e4f6d64
Author: Tomás Di Domenico td...@tdido.com.ar
Date:   Mon Feb 17 11:21:58 2014 +0100

Applying patch provided by Dmitry Shachnev to fix tests and some 
dependencies (738962)
---
 debian/control   | 8 ++--
 debian/tests/build   | 4 ++--
 debian/tests/control | 3 ++-
 3 files changed, 10 insertions(+), 5 deletions(-)

diff --git a/debian/control b/debian/control
index 82db722..eeef92d 100644
--- a/debian/control
+++ b/debian/control
@@ -22,7 +22,9 @@ X-Python3-Version: = 3.1
 Package: python-csb
 Architecture: all
 Depends: ${misc:Depends},
- ${python:Depends}
+ ${python:Depends},
+ python-numpy,
+ python-scipy
 Suggests: python-csb-doc
 Description: Python framework for structural bioinformatics 
  Computational Structural Biology Toolbox (CSB) is a Python class
@@ -35,7 +37,9 @@ Description: Python framework for structural bioinformatics
 Package: python3-csb
 Architecture: all
 Depends: ${misc:Depends},
- ${python3:Depends}
+ ${python3:Depends},
+ python3-numpy,
+ python3-scipy
 Suggests: python-csb-doc
 Description: Python framework for structural bioinformatics (Python3 version)
  Computational Structural Biology Toolbox (CSB) is a Python class
diff --git a/debian/tests/build b/debian/tests/build
index e6ee7f7..9eb6774 100644
--- a/debian/tests/build
+++ b/debian/tests/build
@@ -5,6 +5,6 @@ set -eu
 cp -r csb/test $ADTTMP/
 
 cd $ADTTMP
-for python in $(pyversions -i) $(py3versions -i); do
-PYTHONPATH=$(CURDIR):$(PYTHONPATH) PYTHONWARNINGS=d python test/app.py 
--generated-resources /tmp
+for py in $(pyversions -i) $(py3versions -i); do
+PYTHONWARNINGS=d $py test/app.py --generated-resources /tmp --verbosity 2
 done
diff --git a/debian/tests/control b/debian/tests/control
index ec92df6..6b68d1a 100644
--- a/debian/tests/control
+++ b/debian/tests/control
@@ -1,2 +1,3 @@
 Tests: build
-Depends: python-csb,python3-csb,python-unittest2,python-numpy
+Depends: python-csb, python-unittest2, python3-csb, python3-all
+Restrictions: allow-stderr

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[med-svn] [python-csb] annotated tag upstream/1.2.3+dfsg created (now 6a6d643)

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a change to annotated tag upstream/1.2.3+dfsg
in repository python-csb.

at  6a6d643   (tag)
   tagging  0e768c3c55434f5ca2d3320669829330508f3370 (commit)
  replaces  upstream/1.2.1+dfsg
 tagged by  Tomás Di Domenico
on  Mon Feb 17 11:28:19 2014 +0100

- Log -
Upstream version 1.2.3+dfsg

Andreas Tille (1):
  Imported Upstream version 1.2.2+dfsg

Tomás Di Domenico (1):
  Imported Upstream version 1.2.3+dfsg

---

No new revisions were added by this update.

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[med-svn] [python-csb] branch master updated (a54dcaa - 5aa54e5)

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a change to branch master
in repository python-csb.

  from  a54dcaa   Fixed date in changelog
   new  fe633e9   Applying patch provided by Dmitry Shachnev to fix tests 
and some dependencies (738962)
   new  b6b3146   Imported Upstream version 1.2.3+dfsg
   new  5aa54e5   Updated changelog

The 3 revisions listed above as new are entirely new to this
repository and will be described in separate emails.  The revisions
listed as adds were already present in the repository and have only
been added to this reference.


Summary of changes:
 PKG-INFO   |  2 +-
 csb/__init__.py|  2 +-
 csb/apps/bfit.py   |  8 ++--
 csb/apps/bfite.py  |  7 +--
 csb/apps/buildhmm.py   |  8 +---
 csb/apps/csfrag.py | 10 +-
 csb/apps/embd.py   |  8 +---
 csb/apps/helloworld.py |  9 ++---
 csb/apps/hhfrag.py |  9 +
 csb/apps/hhsearch.py   |  8 +---
 csb/apps/precision.py  |  8 +---
 csb/apps/promix.py | 10 ++
 debian/changelog   |  9 +
 debian/control |  8 ++--
 debian/tests/build |  4 ++--
 debian/tests/control   |  3 ++-
 16 files changed, 70 insertions(+), 43 deletions(-)

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[med-svn] [python-csb] 02/03: Imported Upstream version 1.2.3+dfsg

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a commit to branch master
in repository python-csb.

commit b6b3146c597270a679e2b2ed102f9e834f84839d
Author: Tomás Di Domenico td...@tdido.com.ar
Date:   Mon Feb 17 11:28:17 2014 +0100

Imported Upstream version 1.2.3+dfsg
---
 PKG-INFO   |  2 +-
 csb/__init__.py|  2 +-
 csb/apps/bfit.py   |  8 ++--
 csb/apps/bfite.py  |  7 +--
 csb/apps/buildhmm.py   |  8 +---
 csb/apps/csfrag.py | 10 +-
 csb/apps/embd.py   |  8 +---
 csb/apps/helloworld.py |  9 ++---
 csb/apps/hhfrag.py |  9 +
 csb/apps/hhsearch.py   |  8 +---
 csb/apps/precision.py  |  8 +---
 csb/apps/promix.py | 10 ++
 12 files changed, 55 insertions(+), 34 deletions(-)

diff --git a/PKG-INFO b/PKG-INFO
index a69d881..074a763 100644
--- a/PKG-INFO
+++ b/PKG-INFO
@@ -1,6 +1,6 @@
 Metadata-Version: 1.1
 Name: csb
-Version: 1.2.2
+Version: 1.2.3
 Summary: Computational Structural Biology Toolbox
 Home-page: http://csb.codeplex.com
 Author: Michael Habeck et al.
diff --git a/csb/__init__.py b/csb/__init__.py
index ff38330..e29e1aa 100644
--- a/csb/__init__.py
+++ b/csb/__init__.py
@@ -185,7 +185,7 @@ CSB is open source and distributed under OSI-approved MIT 
license::
 
 
 
-__version__ = '1.2.2.614'
+__version__ = '1.2.3.617'
 
 
 class Version(object):
diff --git a/csb/apps/bfit.py b/csb/apps/bfit.py
index 2f00b85..7025e44 100644
--- a/csb/apps/bfit.py
+++ b/csb/apps/bfit.py
@@ -114,6 +114,10 @@ class BFitApp(csb.apps.Application):
 m.to_pdb(self.args.outfile)
 
 
-
-if __name__ == '__main__':
+def main():
 AppRunner().run()
+
+
+if __name__ == '__main__':
+main()
+
diff --git a/csb/apps/bfite.py b/csb/apps/bfite.py
index 478ce99..e686753 100644
--- a/csb/apps/bfite.py
+++ b/csb/apps/bfite.py
@@ -109,8 +109,11 @@ class BFitApp(csb.apps.Application):
 out_ensemble.models.append(model)
 
 out_ensemble.to_pdb(self.args.outfile)
-
 
 
-if __name__ == '__main__':
+def main():
 AppRunner().run()
+
+
+if __name__ == '__main__':
+main()
\ No newline at end of file
diff --git a/csb/apps/buildhmm.py b/csb/apps/buildhmm.py
index 352c043..3eda864 100644
--- a/csb/apps/buildhmm.py
+++ b/csb/apps/buildhmm.py
@@ -297,7 +297,9 @@ class PDBProfileBuilder(ProfileBuilder):
 return pdb 
 
 
-
-if __name__ == '__main__':
+def main():
+AppRunner().run()
 
-AppRunner().run()
+
+if __name__ == '__main__':
+main()
\ No newline at end of file
diff --git a/csb/apps/csfrag.py b/csb/apps/csfrag.py
index fd37458..d0a6f86 100644
--- a/csb/apps/csfrag.py
+++ b/csb/apps/csfrag.py
@@ -533,9 +533,9 @@ def _task(helper, subject, qs, qe, qcs, scs):
 return []
 
 
-
-
-if __name__ == '__main__':
- 
+def main():
 AppRunner().run()
-
\ No newline at end of file
+
+
+if __name__ == '__main__':
+main()
\ No newline at end of file
diff --git a/csb/apps/embd.py b/csb/apps/embd.py
index b2c8da3..c70ee42 100644
--- a/csb/apps/embd.py
+++ b/csb/apps/embd.py
@@ -275,9 +275,11 @@ class Deconvolution(object):
 
 for i in range(iterations):
 self.run_once()
-
 
 
-if __name__ == '__main__':
-
+def main():
 AppRunner().run()
+
+
+if __name__ == '__main__':
+main()
\ No newline at end of file
diff --git a/csb/apps/helloworld.py b/csb/apps/helloworld.py
index 06d2b96..7592500 100644
--- a/csb/apps/helloworld.py
+++ b/csb/apps/helloworld.py
@@ -48,8 +48,11 @@ class HelloWorldApp(csb.apps.Application):
 
 self.log(text)
 self.log('HW: done.')
-
 
-if __name__ == '__main__':
+
+def main():
+AppRunner(sys.argv).run()
 
-AppRunner(sys.argv).run()
+
+if __name__ == '__main__':
+main()
diff --git a/csb/apps/hhfrag.py b/csb/apps/hhfrag.py
index 51e0b86..804afbf 100644
--- a/csb/apps/hhfrag.py
+++ b/csb/apps/hhfrag.py
@@ -581,10 +581,11 @@ class PredictionBuilder(object):
 
 for i in ri:
 self.add(i)
-
+
+
+def main():
+AppRunner().run()
 
 
 if __name__ == '__main__':
-
-AppRunner().run()
-
\ No newline at end of file
+main()
\ No newline at end of file
diff --git a/csb/apps/hhsearch.py b/csb/apps/hhsearch.py
index eeab329..54caaf7 100644
--- a/csb/apps/hhsearch.py
+++ b/csb/apps/hhsearch.py
@@ -271,9 +271,11 @@ class HHsearch(object):
 pool.terminate()
 
 return results
-
+
+
+def main():
+AppRunner().run()
 
 
 if __name__ == '__main__':
-
-AppRunner().run()
+main()
\ No newline at end of file
diff --git a/csb/apps/precision.py b/csb/apps/precision.py
index cbe8632..d4e6159 100644
--- a/csb/apps/precision.py
+++ b/csb/apps/precision.py
@@ -313,9 +313,11 @@ def rmsd(target, source, fragments, pdb, save=None):
 

[med-svn] [python-csb] branch upstream updated (1c84ae5 - 0e768c3)

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a change to branch upstream
in repository python-csb.

  from  1c84ae5   Imported Upstream version 1.2.2+dfsg
   new  0e768c3   Imported Upstream version 1.2.3+dfsg

The 1 revisions listed above as new are entirely new to this
repository and will be described in separate emails.  The revisions
listed as adds were already present in the repository and have only
been added to this reference.


Summary of changes:
 PKG-INFO   |  2 +-
 csb/__init__.py|  2 +-
 csb/apps/bfit.py   |  8 ++--
 csb/apps/bfite.py  |  7 +--
 csb/apps/buildhmm.py   |  8 +---
 csb/apps/csfrag.py | 10 +-
 csb/apps/embd.py   |  8 +---
 csb/apps/helloworld.py |  9 ++---
 csb/apps/hhfrag.py |  9 +
 csb/apps/hhsearch.py   |  8 +---
 csb/apps/precision.py  |  8 +---
 csb/apps/promix.py | 10 ++
 12 files changed, 55 insertions(+), 34 deletions(-)

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[med-svn] [python-csb] branch pristine-tar updated (2e2945a - d86fa2f)

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a change to branch pristine-tar
in repository python-csb.

  from  2e2945a   pristine-tar data for python-csb_1.2.2+dfsg.orig.tar.xz
   new  d86fa2f   pristine-tar data for python-csb_1.2.3+dfsg.orig.tar.gz

The 1 revisions listed above as new are entirely new to this
repository and will be described in separate emails.  The revisions
listed as adds were already present in the repository and have only
been added to this reference.


Summary of changes:
 python-csb_1.2.3+dfsg.orig.tar.gz.delta | Bin 0 - 5454 bytes
 python-csb_1.2.3+dfsg.orig.tar.gz.id|   1 +
 2 files changed, 1 insertion(+)
 create mode 100644 python-csb_1.2.3+dfsg.orig.tar.gz.delta
 create mode 100644 python-csb_1.2.3+dfsg.orig.tar.gz.id

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[med-svn] [python-csb] 01/01: pristine-tar data for python-csb_1.2.3+dfsg.orig.tar.gz

2014-02-17 Thread Tomás Di Domenico
This is an automated email from the git hooks/post-receive script.

tdido-guest pushed a commit to branch pristine-tar
in repository python-csb.

commit d86fa2f67dd6bd17856f7d447f830587f6534bb6
Author: Tomás Di Domenico td...@tdido.com.ar
Date:   Mon Feb 17 11:28:19 2014 +0100

pristine-tar data for python-csb_1.2.3+dfsg.orig.tar.gz
---
 python-csb_1.2.3+dfsg.orig.tar.gz.delta | Bin 0 - 5454 bytes
 python-csb_1.2.3+dfsg.orig.tar.gz.id|   1 +
 2 files changed, 1 insertion(+)

diff --git a/python-csb_1.2.3+dfsg.orig.tar.gz.delta 
b/python-csb_1.2.3+dfsg.orig.tar.gz.delta
new file mode 100644
index 000..948ecab
Binary files /dev/null and b/python-csb_1.2.3+dfsg.orig.tar.gz.delta differ
diff --git a/python-csb_1.2.3+dfsg.orig.tar.gz.id 
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[med-svn] r16052 - in trunk/packages/spades/trunk/debian: . patches

2014-02-17 Thread Andreas Tille
Author: tille
Date: 2014-02-17 15:27:30 + (Mon, 17 Feb 2014)
New Revision: 16052

Modified:
   trunk/packages/spades/trunk/debian/copyright
   trunk/packages/spades/trunk/debian/patches/use_debian-packaged_boost.patch
Log:
Add upstream contact


Modified: trunk/packages/spades/trunk/debian/copyright
===
--- trunk/packages/spades/trunk/debian/copyright2014-02-17 14:27:09 UTC 
(rev 16051)
+++ trunk/packages/spades/trunk/debian/copyright2014-02-17 15:27:30 UTC 
(rev 16052)
@@ -1,5 +1,6 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: SPAdes
+Upstream-Contact: spades.supp...@bioinf.spbau.ru
 Source: http://spades.bioinf.spbau.ru/
 Files-Excluded:
 ext/include/boost

Modified: 
trunk/packages/spades/trunk/debian/patches/use_debian-packaged_boost.patch
===
--- trunk/packages/spades/trunk/debian/patches/use_debian-packaged_boost.patch  
2014-02-17 14:27:09 UTC (rev 16051)
+++ trunk/packages/spades/trunk/debian/patches/use_debian-packaged_boost.patch  
2014-02-17 15:27:30 UTC (rev 16052)
@@ -1,4 +1,4 @@
-uthor: Andreas Tille ti...@debian.org
+Author: Andreas Tille ti...@debian.org
 Last-Changed: Wed, 05 Feb 2014 15:12:36 +0100
 Description: SPAdes originally contained code copies of boost
   header files.  The code copy was removed and this patch forces


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