[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 2cddeb61 by Andreas Tille at 2024-06-01T01:43:07+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 31 May 2024 13:42:04 + +Last-Update: Sat, 01 Jun 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 31 May 2024 13:42:09 + +Last-Update: Sat, 01 Jun 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 31 May 2024 13:42:12 + +Last-Update: Sat, 01 Jun 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2cddeb61a53eec993ef64f20f17c7bc8285b0e61 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2cddeb61a53eec993ef64f20f17c7bc8285b0e61 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 46d3cfd2 by Andreas Tille at 2024-05-31T01:43:09+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 30 May 2024 13:42:04 + +Last-Update: Fri, 31 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 30 May 2024 13:42:08 + +Last-Update: Fri, 31 May 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 30 May 2024 13:42:11 + +Last-Update: Fri, 31 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/46d3cfd2fb33daa206082c5af405af960187fa6e -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/46d3cfd2fb33daa206082c5af405af960187fa6e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 5b08e357 by Andreas Tille at 2024-05-30T01:42:28+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 29 May 2024 13:42:05 + +Last-Update: Thu, 30 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 29 May 2024 13:42:09 + +Last-Update: Thu, 30 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 29 May 2024 13:42:12 + +Last-Update: Thu, 30 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5b08e3578f83c5a42c9675d2b56b1cac30f240da -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5b08e3578f83c5a42c9675d2b56b1cac30f240da You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 29fecf0d by Andreas Tille at 2024-05-29T01:42:28+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 28 May 2024 13:42:04 + +Last-Update: Wed, 29 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 28 May 2024 13:42:06 + +Last-Update: Wed, 29 May 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 28 May 2024 13:42:07 + +Last-Update: Wed, 29 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/29fecf0dd7ee85134942a4fcca82bbd5ea6b7229 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/29fecf0dd7ee85134942a4fcca82bbd5ea6b7229 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: fa658b0b by Andreas Tille at 2024-05-28T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 27 May 2024 13:42:04 + +Last-Update: Tue, 28 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 27 May 2024 13:42:08 + +Last-Update: Tue, 28 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 27 May 2024 13:42:12 + +Last-Update: Tue, 28 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa658b0b8bc8c7f090babeec9da15f1ae69b7c4c -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa658b0b8bc8c7f090babeec9da15f1ae69b7c4c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 15e6ed98 by Andreas Tille at 2024-05-27T01:42:29+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 26 May 2024 13:42:04 + +Last-Update: Mon, 27 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 26 May 2024 13:42:08 + +Last-Update: Mon, 27 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 26 May 2024 13:42:11 + +Last-Update: Mon, 27 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/15e6ed985c756e098223dfbc93a136bed8a52b74 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/15e6ed985c756e098223dfbc93a136bed8a52b74 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 64802fe8 by Andreas Tille at 2024-05-25T01:42:27+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 24 May 2024 13:42:04 + +Last-Update: Sat, 25 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 24 May 2024 13:42:09 + +Last-Update: Sat, 25 May 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 24 May 2024 13:42:12 + +Last-Update: Sat, 25 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/64802fe814d39dcfe35c543c82fcb7dd887473a9 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/64802fe814d39dcfe35c543c82fcb7dd887473a9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: b53e5b31 by Andreas Tille at 2024-05-24T01:42:28+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 23 May 2024 13:42:05 + +Last-Update: Fri, 24 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 23 May 2024 13:42:09 + +Last-Update: Fri, 24 May 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 23 May 2024 13:42:12 + +Last-Update: Fri, 24 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b53e5b318f626e11bf9678f574725e5e11b9f386 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b53e5b318f626e11bf9678f574725e5e11b9f386 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 994abf06 by Andreas Tille at 2024-05-23T01:42:29+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 22 May 2024 13:42:08 + +Last-Update: Thu, 23 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 22 May 2024 13:42:12 + +Last-Update: Thu, 23 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 22 May 2024 13:42:15 + +Last-Update: Thu, 23 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/994abf0667b5e8d154f50c01a204497f6a4bae48 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/994abf0667b5e8d154f50c01a204497f6a4bae48 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: aa2014d8 by Andreas Tille at 2024-05-22T01:42:27+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 21 May 2024 13:42:04 + +Last-Update: Wed, 22 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 21 May 2024 13:42:06 + +Last-Update: Wed, 22 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 21 May 2024 13:42:07 + +Last-Update: Wed, 22 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aa2014d842a717da741774d04d45df8e96334826 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aa2014d842a717da741774d04d45df8e96334826 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: c51e7891 by Andreas Tille at 2024-05-21T01:42:59+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 20 May 2024 13:42:04 + +Last-Update: Tue, 21 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 20 May 2024 13:42:08 + +Last-Update: Tue, 21 May 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 20 May 2024 13:42:11 + +Last-Update: Tue, 21 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c51e78919c428b657b19c0dd9d777cb17076285a -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c51e78919c428b657b19c0dd9d777cb17076285a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 68b7917f by Andreas Tille at 2024-05-20T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 19 May 2024 13:42:04 + +Last-Update: Mon, 20 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 19 May 2024 13:42:08 + +Last-Update: Mon, 20 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 19 May 2024 13:42:11 + +Last-Update: Mon, 20 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/68b7917f6ae899f942ed7e585f95e891eacf9d04 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/68b7917f6ae899f942ed7e585f95e891eacf9d04 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: b5bd35d4 by Andreas Tille at 2024-05-18T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 17 May 2024 13:42:04 + +Last-Update: Sat, 18 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 17 May 2024 13:42:08 + +Last-Update: Sat, 18 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 17 May 2024 13:42:11 + +Last-Update: Sat, 18 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5bd35d41d8bd319eb9d841bd9e1ebfb9c8d30a4 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5bd35d41d8bd319eb9d841bd9e1ebfb9c8d30a4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 11fc21a7 by Andreas Tille at 2024-05-17T01:43:00+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 16 May 2024 13:42:05 + +Last-Update: Fri, 17 May 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 16 May 2024 13:42:09 + +Last-Update: Fri, 17 May 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 16 May 2024 13:42:12 + +Last-Update: Fri, 17 May 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/11fc21a706d37647999f1100f92c67f548c01757 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/11fc21a706d37647999f1100f92c67f548c01757 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pplacer] Pushed new tag debian/1.1_alpha19-7
Andreas Tille pushed new tag debian/1.1_alpha19-7 at Debian Med / pplacer -- View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/tree/debian/1.1_alpha19-7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pplacer][master] 4 commits: libmcl14 was accepted
Andreas Tille pushed to branch master at Debian Med / pplacer Commits: 030a4cd7 by Andreas Tille at 2024-05-15T21:48:36+02:00 libmcl14 was accepted - - - - - 9dd5e6e9 by Andreas Tille at 2024-05-16T20:40:31+02:00 No team upload - - - - - 3d9b1e80 by Andreas Tille at 2024-05-16T20:40:51+02:00 routine-update: Standards-Version: 4.7.0 - - - - - a418f78b by Andreas Tille at 2024-05-16T21:27:34+02:00 routine-update: Ready to upload to unstable - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,7 +1,6 @@ -pplacer (1.1~alpha19-7) UNRELEASED; urgency=medium +pplacer (1.1~alpha19-7) unstable; urgency=medium [ Mohammed Bilal ] - * Team upload. * Install data for autopkgtests * add autopkgtest (Closes: #1009156) @@ -10,9 +9,9 @@ pplacer (1.1~alpha19-7) UNRELEASED; urgency=medium * Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer builds only against old mcl14 featuring an OCAML patch Closes: #1024889 - TODO: libmcl14 needs to pass new queue + * Standards-Version: 4.7.0 (routine-update) - -- Mohammed Bilal Mon, 11 Apr 2022 01:29:59 +0530 + -- Andreas Tille Thu, 16 May 2024 21:24:16 +0200 pplacer (1.1~alpha19-6) unstable; urgency=medium = debian/control = @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13), libsqlite3-ocaml-dev, libzip-ocaml-dev, libounit-ocaml-dev -Standards-Version: 4.6.0 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/pplacer Vcs-Git: https://salsa.debian.org/med-team/pplacer.git Homepage: https://github.com/matsen/pplacer View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/compare/e1ce0a3c941d7cd49d1c0ae23bbd0ed0a40de9c2...a418f78b6468f7e83c26264ce584b259742d8f7a -- View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/compare/e1ce0a3c941d7cd49d1c0ae23bbd0ed0a40de9c2...a418f78b6468f7e83c26264ce584b259742d8f7a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: fddbd000 by Andreas Tille at 2024-05-16T01:42:51+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 15 May 2024 13:42:04 + +Last-Update: Thu, 16 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 15 May 2024 13:42:08 + +Last-Update: Thu, 16 May 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 15 May 2024 13:42:11 + +Last-Update: Thu, 16 May 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fddbd000b6cdf99df70f7435047a3a94bc9fb3aa -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fddbd000b6cdf99df70f7435047a3a94bc9fb3aa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libamplsolver][master] 3 commits: Fix FTBFS: fedisableexcept() is a GNU extension, so it has to be enabled by...
Andreas Tille pushed to branch master at Debian Med / libamplsolver Commits: cf42af0b by Andreas Tille at 2024-05-15T08:19:27+02:00 Fix FTBFS: fedisableexcept() is a GNU extension, so it has to be enabled by building with -D_GNU_SOURCE. - - - - - 8448460c by Andreas Tille at 2024-05-15T08:19:46+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 2364ec62 by Andreas Tille at 2024-05-15T08:22:16+02:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/fedisableexcept.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,17 @@ +libamplsolver (0~20190702-3) unstable; urgency=medium + + * Team upload. + + [ Aurelien Jarno ] + * Fix FTBFS: fedisableexcept() is a GNU extension, so it has +to be enabled by building with -D_GNU_SOURCE. +Closes: #1070980 + + [ Andreas Tille ] + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille Wed, 15 May 2024 08:20:11 +0200 + libamplsolver (0~20190702-2) unstable; urgency=medium * Team upload. = debian/control = @@ -5,7 +5,7 @@ Section: science Priority: optional Build-Depends: debhelper-compat (= 13), d-shlibs -Standards-Version: 4.5.0 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libamplsolver Vcs-Git: https://salsa.debian.org/med-team/libamplsolver.git Homepage: https://ampl.com/netlib/ampl/ = debian/patches/fedisableexcept.patch = @@ -0,0 +1,26 @@ +Last-Update: Sun, 12 May 2024 13:02:02 +0200 +From: Aurelien Jarno +Bug-Debian: https://bugs.debian.org/1070980 +Description: fedisableexcept() is a GNU extension, so it has + to be enabled by building with -D_GNU_SOURCE. + +--- a/fpinit.c b/fpinit.c +@@ -49,6 +49,7 @@ int isatty_ASL; /* for use with "sw" und + #undef WIN32 + #define WIN32 + #else ++#define _GNU_SOURCE /* needed for fedisableexcept */ + #include "fenv.h" + #endif + +--- a/solvers/fpinit.c b/solvers/fpinit.c +@@ -49,6 +49,7 @@ int isatty_ASL; /* for use with "sw" und + #undef WIN32 + #define WIN32 + #else ++#define _GNU_SOURCE /* needed for fedisableexcept */ + #include "fenv.h" + #endif + = debian/patches/series = @@ -1 +1,2 @@ fix-makefile-shared-lib.patch +fedisableexcept.patch View it on GitLab: https://salsa.debian.org/med-team/libamplsolver/-/compare/08643b7f266ffc9652783c81a2a61089aa6bf347...2364ec6242e23a017fdc85aab868aa55f51df46a -- View it on GitLab: https://salsa.debian.org/med-team/libamplsolver/-/compare/08643b7f266ffc9652783c81a2a61089aa6bf347...2364ec6242e23a017fdc85aab868aa55f51df46a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libamplsolver] Pushed new tag debian/0_20190702-3
Andreas Tille pushed new tag debian/0_20190702-3 at Debian Med / libamplsolver -- View it on GitLab: https://salsa.debian.org/med-team/libamplsolver/-/tree/debian/0_20190702-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: df3ef9b7 by Andreas Tille at 2024-05-15T01:43:12+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 14 May 2024 13:42:11 + +Last-Update: Wed, 15 May 2024 01:42:07 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 14 May 2024 13:42:15 + +Last-Update: Wed, 15 May 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 14 May 2024 13:42:18 + +Last-Update: Wed, 15 May 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/df3ef9b79db8dc6510168227d9e82ced41415d23 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/df3ef9b79db8dc6510168227d9e82ced41415d23 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: e1318807 by Andreas Tille at 2024-05-14T01:42:59+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 13 May 2024 13:42:05 + +Last-Update: Tue, 14 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 13 May 2024 13:42:09 + +Last-Update: Tue, 14 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 13 May 2024 13:42:12 + +Last-Update: Tue, 14 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e1318807224732af17f5df71c93608a6bc6e9e2f -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e1318807224732af17f5df71c93608a6bc6e9e2f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 433b2ab6 by Andreas Tille at 2024-05-13T01:42:34+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 12 May 2024 13:42:05 + +Last-Update: Mon, 13 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 12 May 2024 13:42:09 + +Last-Update: Mon, 13 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 12 May 2024 13:42:12 + +Last-Update: Mon, 13 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/433b2ab64d6e4889e6d1879d2202acd9cd829708 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/433b2ab64d6e4889e6d1879d2202acd9cd829708 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 12d88be2 by Andreas Tille at 2024-05-09T01:42:52+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 08 May 2024 13:42:05 + +Last-Update: Thu, 09 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 08 May 2024 13:42:09 + +Last-Update: Thu, 09 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 08 May 2024 13:42:12 + +Last-Update: Thu, 09 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12d88be2dcb6377cc998c00ba7c098fe7dd9d669 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12d88be2dcb6377cc998c00ba7c098fe7dd9d669 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 66f131de by Andreas Tille at 2024-05-08T01:42:39+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 07 May 2024 13:42:06 + +Last-Update: Wed, 08 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 07 May 2024 13:42:10 + +Last-Update: Wed, 08 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 07 May 2024 13:42:13 + +Last-Update: Wed, 08 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/66f131de42113ba28b1bd57991095a2f1c9006c4 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/66f131de42113ba28b1bd57991095a2f1c9006c4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 0030a724 by Andreas Tille at 2024-05-07T01:43:26+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 06 May 2024 13:42:05 + +Last-Update: Tue, 07 May 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 06 May 2024 13:42:09 + +Last-Update: Tue, 07 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 06 May 2024 13:42:12 + +Last-Update: Tue, 07 May 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0030a724cdbf8eccae2924f48529e5fe5e974acf -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0030a724cdbf8eccae2924f48529e5fe5e974acf You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/psortb][master] 2 commits: Add missing header file
Andreas Tille pushed to branch master at Debian Med / psortb Commits: ba86b822 by Andreas Tille at 2024-05-06T16:32:39+02:00 Add missing header file - - - - - d94c4679 by Andreas Tille at 2024-05-06T16:32:59+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/add_missing_header.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,11 @@ +psortb (3.0.6+dfsg-4) UNRELEASED; urgency=medium + + * Add missing header file +Closes: #1070459 + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille Mon, 06 May 2024 15:57:40 +0200 + psortb (3.0.6+dfsg-3) unstable; urgency=medium * Team upload. = debian/control = @@ -14,7 +14,7 @@ Build-Depends: debhelper-compat (= 13), libmodhmm-dev, pkg-config, pftools, -Standards-Version: 4.6.0 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/psortb Vcs-Git: https://salsa.debian.org/med-team/psortb.git Homepage: https://www.psort.org/ = debian/patches/add_missing_header.patch = @@ -0,0 +1,13 @@ +Description: Add missing header file +Bug-Debian: https://bugs.debian.org/1070459 +Author: Andreas Tille +Last-Update: Mon, 06 May 2024 15:57:40 +0200 + +--- a/bio-tools-psort-modhmm/binding.c b/bio-tools-psort-modhmm/binding.c +@@ -1,4 +1,5 @@ + #include ++#include + + #include "modhmm0.92b/structs.h" + = debian/patches/series = @@ -4,3 +4,4 @@ fix_build_Algorithm-SVM.patch remove-bundled-party-libsvm.patch path_to_conf.patch fix_module_path.patch +add_missing_header.patch View it on GitLab: https://salsa.debian.org/med-team/psortb/-/compare/3fe3fd751554b870489a7116f57215dacce315cc...d94c46799a5a6906708478730f02bda5be3b7df2 -- View it on GitLab: https://salsa.debian.org/med-team/psortb/-/compare/3fe3fd751554b870489a7116f57215dacce315cc...d94c46799a5a6906708478730f02bda5be3b7df2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 15b53df9 by Andreas Tille at 2024-05-04T01:44:28+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 03 May 2024 13:42:07 + +Last-Update: Sat, 04 May 2024 01:42:10 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 03 May 2024 13:42:11 + +Last-Update: Sat, 04 May 2024 01:42:10 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 03 May 2024 13:42:14 + +Last-Update: Sat, 04 May 2024 01:42:11 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/15b53df9dd60fcf1dc1e2dc026bdd3cf48d4b15e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/15b53df9dd60fcf1dc1e2dc026bdd3cf48d4b15e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8833bc03 by Andreas Tille at 2024-05-01T01:45:44+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 30 Apr 2024 13:42:06 + +Last-Update: Wed, 01 May 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 30 Apr 2024 13:42:10 + +Last-Update: Wed, 01 May 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 30 Apr 2024 13:42:13 + +Last-Update: Wed, 01 May 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8833bc037115400467efbdc8cce65c059f463f79 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8833bc037115400467efbdc8cce65c059f463f79 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 95b33d73 by Andreas Tille at 2024-04-29T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 28 Apr 2024 13:42:04 + +Last-Update: Mon, 29 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 28 Apr 2024 13:42:06 + +Last-Update: Mon, 29 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 28 Apr 2024 13:42:07 + +Last-Update: Mon, 29 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/95b33d73d26341f98d0ed7344159aa8770bb870e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/95b33d73d26341f98d0ed7344159aa8770bb870e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libbpp-qt] Pushed new tag debian/2.4.1-11
Andreas Tille pushed new tag debian/2.4.1-11 at Debian Med / libbpp-qt -- View it on GitLab: https://salsa.debian.org/med-team/libbpp-qt/-/tree/debian/2.4.1-11 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-cobra] Pushed new tag debian/0.29.0-2
Andreas Tille pushed new tag debian/0.29.0-2 at Debian Med / python-cobra -- View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/tree/debian/0.29.0-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-cobra][master] 3 commits: Build-Depends: s/libsbml5/libsbml5-dev/
Andreas Tille pushed to branch master at Debian Med / python-cobra Commits: 74e7b8df by Andreas Tille at 2024-04-28T07:30:31+02:00 Build-Depends: s/libsbml5/libsbml5-dev/ - - - - - 93056ca4 by Andreas Tille at 2024-04-28T07:31:26+02:00 routine-update: Standards-Version: 4.7.0 - - - - - d65d907e by Andreas Tille at 2024-04-28T07:46:19+02:00 routine-update: Ready to upload to unstable - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,3 +1,12 @@ +python-cobra (0.29.0-2) unstable; urgency=medium + + * Team upload. + * Build-Depends: s/libsbml5/libsbml5-dev/ +Closes: #1069985 + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille Sun, 28 Apr 2024 07:31:52 +0200 + python-cobra (0.29.0-1) unstable; urgency=medium * Team upload. = debian/control = @@ -26,14 +26,14 @@ Build-Depends: debhelper-compat (= 13), python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , - libsbml5 , + libsbml5-dev , python3-matplotlib , python3-appdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Homepage: https://opencobra.github.io/cobrapy/ View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/compare/dae66f557936917e8d2d82b7aef200640231da46...d65d907eac1faa3535db4d2f8d33d7e5aca37d5f -- View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/compare/dae66f557936917e8d2d82b7aef200640231da46...d65d907eac1faa3535db4d2f8d33d7e5aca37d5f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libbpp-qt][master] 3 commits: Fix FTBFS with LTO (link time optimization) enabled
Andreas Tille pushed to branch master at Debian Med / libbpp-qt Commits: 6cb9eb5d by Andreas Tille at 2024-04-28T06:56:22+02:00 Fix FTBFS with LTO (link time optimization) enabled - - - - - 354a01bc by Andreas Tille at 2024-04-28T07:06:11+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 33025c35 by Andreas Tille at 2024-04-28T07:23:37+02:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - debian/libbpp-qt2t64.symbols.amd64 Changes: = debian/changelog = @@ -1,3 +1,14 @@ +libbpp-qt (2.4.1-11) unstable; urgency=medium + + [ Steve Langasek ] + * Fix FTBFS with LTO (link time optimization) enabled +Closes: #1015476 + + [ Andreas Tille ] + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille Sun, 28 Apr 2024 07:13:48 +0200 + libbpp-qt (2.4.1-10) unstable; urgency=medium * Team upload. = debian/control = @@ -10,7 +10,7 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), qt5-qmake, qtdeclarative5-dev, libbpp-phyl-dev -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-qt Vcs-Git: https://salsa.debian.org/med-team/libbpp-qt.git Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page = debian/libbpp-qt2t64.symbols.amd64 = @@ -264,7 +264,7 @@ libbpp-qt.so.2 libbpp-qt2t64 #MINVER# _ZN5QListI7QStringED2Ev@Base 2.4.1 _ZN5QListIP13QGraphicsItemED1Ev@Base 2.4.1 _ZN5QListIP13QGraphicsItemED2Ev@Base 2.4.1 - _ZN5QListIP15QAbstractButtonE6detachEv@Base 2.4.1 + (optional)_ZN5QListIP15QAbstractButtonE6detachEv@Base 2.4.1 _ZN5QListIP15QAbstractButtonED1Ev@Base 2.4.1 _ZN5QListIP15QAbstractButtonED2Ev@Base 2.4.1 _ZN5QListIP17QGraphicsTextItemE18detach_helper_growEii@Base 2.4.1 @@ -273,7 +273,7 @@ libbpp-qt.so.2 libbpp-qt2t64 #MINVER# _ZN7QStringC2EPKc@Base 2.4.1 _ZN7QStringD1Ev@Base 2.4.1 _ZN7QStringD2Ev@Base 2.4.1 - _ZN9QtPrivate8RefCount5derefEv@Base 2.4.1 + (optional)_ZN9QtPrivate8RefCount5derefEv@Base 2.4.1 _ZNK3bpp10TreeCanvas10metaObjectEv@Base 2.4.1 _ZNK3bpp10TreeCanvas12drawingWidthEv@Base 2.4.1 _ZNK3bpp10TreeCanvas13drawingHeightEv@Base 2.4.1 View it on GitLab: https://salsa.debian.org/med-team/libbpp-qt/-/compare/f31a03ce584d7d837a780fbb4afdccb7789400fc...33025c355083ecb096207310584d00ce130fa443 -- View it on GitLab: https://salsa.debian.org/med-team/libbpp-qt/-/compare/f31a03ce584d7d837a780fbb4afdccb7789400fc...33025c355083ecb096207310584d00ce130fa443 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: dc3ddeb2 by Andreas Tille at 2024-04-26T01:43:06+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 25 Apr 2024 13:42:06 + +Last-Update: Fri, 26 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 25 Apr 2024 13:42:10 + +Last-Update: Fri, 26 Apr 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 25 Apr 2024 13:42:13 + +Last-Update: Fri, 26 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dc3ddeb2c1fc15328dc67f53866cb4e5c4568576 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dc3ddeb2c1fc15328dc67f53866cb4e5c4568576 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pplacer][master] Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer builds...
Andreas Tille pushed to branch master at Debian Med / pplacer Commits: e1ce0a3c by Andreas Tille at 2024-04-25T17:24:11+02:00 Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer builds only against old mcl14 featuring an OCAML patch - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -7,6 +7,10 @@ pplacer (1.1~alpha19-7) UNRELEASED; urgency=medium [ Andreas Tille ] * Exclude build test for i386 in Salsa CI + * Build-Depends: s/libmcl-ocaml-dev/libmcl14-ocaml-dev/ since pplacer +builds only against old mcl14 featuring an OCAML patch +Closes: #1024889 + TODO: libmcl14 needs to pass new queue -- Mohammed Bilal Mon, 11 Apr 2022 01:29:59 +0530 = debian/control = @@ -11,11 +11,10 @@ Build-Depends: debhelper-compat (= 13), libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, - libmcl-ocaml-dev, + libmcl14-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, - mcl, libounit-ocaml-dev Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/pplacer View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/commit/e1ce0a3c941d7cd49d1c0ae23bbd0ed0a40de9c2 -- View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/commit/e1ce0a3c941d7cd49d1c0ae23bbd0ed0a40de9c2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sbmltoolbox] Pushed new tag debian/4.1.0-5.1
Andreas Tille pushed new tag debian/4.1.0-5.1 at Debian Med / sbmltoolbox -- View it on GitLab: https://salsa.debian.org/med-team/sbmltoolbox/-/tree/debian/4.1.0-5.1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sbmltoolbox][master] ACK NMU Non-maintainer upload
Andreas Tille pushed to branch master at Debian Med / sbmltoolbox
Commits:
cb058676 by Andreas Tille at 2024-04-25T14:21:58+02:00
ACK NMU Non-maintainer upload
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian/changelog
=
@@ -1,3 +1,10 @@
+sbmltoolbox (4.1.0-5.1) unstable; urgency=medium
+
+ * Non-maintainer upload
+ * Drop Depends: libsbml5 (Closes: #1069296)
+
+ -- Bastian Germann Fri, 19 Apr 2024 16:15:07 +0200
+
sbmltoolbox (4.1.0-5) unstable; urgency=medium
* Standards-Version: 4.5.0 (routine-update)
=
debian/control
=
@@ -13,7 +13,6 @@ Rules-Requires-Root: no
Package: sbmltoolbox
Architecture: all
Depends: ${misc:Depends},
- libsbml5,
libsbml5-octave,
octave
Recommends: qtoctave
View it on GitLab:
https://salsa.debian.org/med-team/sbmltoolbox/-/commit/cb0586760a93932cf3bb775ae6af3c897fc3b41f
--
View it on GitLab:
https://salsa.debian.org/med-team/sbmltoolbox/-/commit/cb0586760a93932cf3bb775ae6af3c897fc3b41f
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 788ac800 by Andreas Tille at 2024-04-24T01:43:14+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 23 Apr 2024 13:42:05 + +Last-Update: Wed, 24 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 23 Apr 2024 13:42:08 + +Last-Update: Wed, 24 Apr 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 23 Apr 2024 13:42:12 + +Last-Update: Wed, 24 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/788ac800a89c15c7f688970c91b231143d03004d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/788ac800a89c15c7f688970c91b231143d03004d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8eb5c916 by Andreas Tille at 2024-04-23T01:42:34+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 22 Apr 2024 13:42:05 + +Last-Update: Tue, 23 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 22 Apr 2024 13:42:09 + +Last-Update: Tue, 23 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 22 Apr 2024 13:42:12 + +Last-Update: Tue, 23 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8eb5c9169bcd36e874d5589ccd5efe8affe08a7e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8eb5c9169bcd36e874d5589ccd5efe8affe08a7e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 9d633660 by Andreas Tille at 2024-04-22T01:42:58+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 21 Apr 2024 13:42:05 + +Last-Update: Mon, 22 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 21 Apr 2024 13:42:09 + +Last-Update: Mon, 22 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 21 Apr 2024 13:42:12 + +Last-Update: Mon, 22 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9d633660b008a84217ea2f471425fcc4be51437d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9d633660b008a84217ea2f471425fcc4be51437d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: e6390c4d by Andreas Tille at 2024-04-20T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 19 Apr 2024 13:42:05 + +Last-Update: Sat, 20 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 19 Apr 2024 13:42:10 + +Last-Update: Sat, 20 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 19 Apr 2024 13:42:13 + +Last-Update: Sat, 20 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e6390c4d1f379836b5596c1298e7abaa983db6ec -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e6390c4d1f379836b5596c1298e7abaa983db6ec You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 047f0187 by Andreas Tille at 2024-04-19T01:42:57+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 18 Apr 2024 13:42:05 + +Last-Update: Fri, 19 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 18 Apr 2024 13:42:06 + +Last-Update: Fri, 19 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 18 Apr 2024 13:42:08 + +Last-Update: Fri, 19 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/047f0187d1262ff523ac97914a632d7e3e81a020 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/047f0187d1262ff523ac97914a632d7e3e81a020 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcftools][pristine-tar] pristine-tar data for bcftools_1.20.orig.tar.gz
Andreas Tille pushed to branch pristine-tar at Debian Med / bcftools Commits: ace19810 by Andreas Tille at 2024-04-18T16:42:04+02:00 pristine-tar data for bcftools_1.20.orig.tar.gz - - - - - 2 changed files: - + bcftools_1.20.orig.tar.gz.delta - + bcftools_1.20.orig.tar.gz.id Changes: = bcftools_1.20.orig.tar.gz.delta = Binary files /dev/null and b/bcftools_1.20.orig.tar.gz.delta differ = bcftools_1.20.orig.tar.gz.id = @@ -0,0 +1 @@ +76e16e70810c784a099a85c64ebd6bddf47ee550 View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/commit/ace19810f4e3868f12aa2eeea478d86a1e737cd1 -- View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/commit/ace19810f4e3868f12aa2eeea478d86a1e737cd1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcftools][master] 4 commits: Add missing Depends
Andreas Tille pushed to branch master at Debian Med / bcftools
Commits:
a46c2e25 by Andreas Tille at 2024-04-18T16:34:52+02:00
Add missing Depends
- - - - -
f9ef9e75 by Andreas Tille at 2024-04-18T16:35:07+02:00
routine-update: Standards-Version: 4.7.0
- - - - -
c413305a by Andreas Tille at 2024-04-18T17:14:25+02:00
Refresh patches
- - - - -
f2576d2a by Andreas Tille at 2024-04-18T17:19:00+02:00
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/patches/series
- debian/patches/skip_new_test_failing_on_32bit.patch
- debian/patches/tests-pluginpath.patch
Changes:
=
debian/changelog
=
@@ -1,9 +1,15 @@
-bcftools (1.20-1) UNRELEASED; urgency=medium
+bcftools (1.20-1) unstable; urgency=medium
+ [ Charles Plessy ]
* Team upload.
* New upstream version
- -- Charles Plessy Thu, 18 Apr 2024 08:51:21 +0900
+ [ Andreas Tille ]
+ * Add missing Depends
+Closes: #1069234
+ * Standards-Version: 4.7.0 (routine-update)
+
+ -- Andreas Tille Thu, 18 Apr 2024 17:14:39 +0200
bcftools (1.19-1) unstable; urgency=medium
=
debian/control
=
@@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 13),
libgsl-dev,
tabix ,
libio-pty-perl
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/bcftools
Vcs-Git: https://salsa.debian.org/med-team/bcftools.git
Homepage: https://samtools.github.io/bcftools/
@@ -22,13 +22,14 @@ Package: bcftools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- sse2-support [i386]
+ sse2-support [i386],
+ python3-gffutils,
+ python3-matplotlib
Recommends: perl
Suggests:
# These are needed for plot-vcfstats
python3,
python3-numpy,
- python3-matplotlib,
texlive-latex-recommended
Description: genomic variant calling and manipulation of VCF/BCF files
BCFtools is a set of utilities that manipulate variant calls in the
=
debian/patches/series
=
@@ -1,4 +1,3 @@
tests-pluginpath.patch
skip_new_test_failing_on_32bit.patch
2to3.patch
-typo.patch
=
debian/patches/skip_new_test_failing_on_32bit.patch
=
@@ -9,9 +9,9 @@ Description: Skip single test causing new failures
.
FIXME: This workaround needs to be reconsidered in future versions
bcftools.orig/test/test.pl
-+++ bcftools/test/test.pl
-@@ -206,7 +206,7 @@
+--- a/test/test.pl
b/test/test.pl
+@@ -212,7 +212,7 @@ run_test(\_vcf_query,$opts,in=>'que
run_test(\_vcf_query,$opts,in=>'query.filter.11',out=>'query.81.out',args=>q[-f'[%POS\\t%SAMPLE\\t%GT\\n]'
-e'N_PASS(GT="alt")==1']);
run_test(\_vcf_query,$opts,in=>'query.filter.11',out=>'query.80.out',args=>q[-f'[%POS\\t%SAMPLE\\t%GT\\n]'
-e'N_PASS(GT="alt")!=1']);
run_test(\_vcf_query,$opts,in=>'query',out=>'query.64.out',args=>q[-f'%CHROM\\t%POS\\t%INFO\\t%FORMAT\\n'
-s D,C]);
=
debian/patches/tests-pluginpath.patch
=
@@ -8,9 +8,9 @@ Description: Set the bcftools plugin path to search system
directories
Author: Afif Elghraoui
Forwarded: not-needed
Last-Update: 2015-11-09
bcftools.orig/test/test.pl
-+++ bcftools/test/test.pl
-@@ -1742,7 +1742,7 @@
+--- a/test/test.pl
b/test/test.pl
+@@ -1811,7 +1811,7 @@ sub test_vcf_plugin
{
my ($opts,%args) = @_;
if ( !$$opts{test_plugins} ) { return; }
View it on GitLab:
https://salsa.debian.org/med-team/bcftools/-/compare/0590dca4fe5ed1591d7a44fc573eb09199444bef...f2576d2a782334295689fe9c1d93c4ac97c287c8
--
View it on GitLab:
https://salsa.debian.org/med-team/bcftools/-/compare/0590dca4fe5ed1591d7a44fc573eb09199444bef...f2576d2a782334295689fe9c1d93c4ac97c287c8
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[med-svn] [Git][med-team/bcftools] Pushed new tag debian/1.20-1
Andreas Tille pushed new tag debian/1.20-1 at Debian Med / bcftools -- View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/tree/debian/1.20-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 03b16863 by Andreas Tille at 2024-04-18T01:42:59+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 17 Apr 2024 13:42:05 + +Last-Update: Thu, 18 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 17 Apr 2024 13:42:09 + +Last-Update: Thu, 18 Apr 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 17 Apr 2024 13:42:13 + +Last-Update: Thu, 18 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/03b16863c14decfc65f5b48ce75a2991d1388455 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/03b16863c14decfc65f5b48ce75a2991d1388455 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/sambamba] Pushed new tag debian/1.0.1+dfsg-2
Andreas Tille pushed new tag debian/1.0.1+dfsg-2 at Debian Med / sambamba -- View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/tree/debian/1.0.1+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: bfaac8b3 by Andreas Tille at 2024-04-16T01:43:25+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 15 Apr 2024 13:42:04 + +Last-Update: Tue, 16 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 15 Apr 2024 13:42:08 + +Last-Update: Tue, 16 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 15 Apr 2024 13:42:11 + +Last-Update: Tue, 16 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bfaac8b3e0bb4a70a66ab0648eec7a03148c808e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bfaac8b3e0bb4a70a66ab0648eec7a03148c808e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-bx] Pushed new tag debian/0.11.0-4
Andreas Tille pushed new tag debian/0.11.0-4 at Debian Med / python-bx -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/tree/debian/0.11.0-4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-bx][master] 4 commits: Fix import statement s/cookbook/bx.cookbook/
Andreas Tille pushed to branch master at Debian Med / python-bx Commits: b0b0b724 by Andreas Tille at 2024-04-15T10:08:34+02:00 Fix import statement s/cookbook/bx.cookbook/ - - - - - cfbc7fe7 by Andreas Tille at 2024-04-15T10:09:48+02:00 Psyco is only available for Python = 2.6 - - - - - fc7241cb by Andreas Tille at 2024-04-15T10:10:11+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 2214ed5b by Andreas Tille at 2024-04-15T10:15:30+02:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/fix_import_cookbook.patch - + debian/patches/no_psyco.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,13 @@ +python-bx (0.11.0-4) unstable; urgency=medium + + * Team upload. + * Fix import statement s/cookbook/bx.cookbook/ + * Psyco is only available for Python <= 2.6 +Closes: #1068996 + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille Mon, 15 Apr 2024 10:11:31 +0200 + python-bx (0.11.0-3) unstable; urgency=medium * Added patch to correct an include. Closes: #1066569 = debian/control = @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13), python3-pytest-cython , python3-numpy , cython3 -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Homepage: https://github.com/bxlab/bx-python = debian/patches/fix_import_cookbook.patch = @@ -0,0 +1,16 @@ +Description: Fix import statement s/cookbook/bx.cookbook/ +Bug-Debian: https://bugs.debian.org/1068996 +Author: Andreas Tille +Last-Updat: Mon, 15 Apr 2024 08:27:39 +0200 + +--- a/scripts/maf_tile_2.py b/scripts/maf_tile_2.py +@@ -31,7 +31,7 @@ usage: %prog list,of,species,to,keep seq + + import sys + +-from cookbook import doc_optparse ++from bx.cookbook import doc_optparse + + import bx.align as align + import bx.align.maf as maf = debian/patches/no_psyco.patch = @@ -0,0 +1,20 @@ +Description: psyco is only available for Python <= 2.6 +Bug-Debian: https://bugs.debian.org/1068996 +Author: Andreas Tille +Last-Updat: Mon, 15 Apr 2024 08:27:39 +0200 + +--- a/scripts/maf_word_frequency.py b/scripts/maf_word_frequency.py +@@ -12,12 +12,8 @@ usage: %prog n < maf_file + import string + import sys + +-import psyco +- + from bx.align import maf + +-psyco.profile() +- + + def __main__(): + motif_len = int(sys.argv[1]) = debian/patches/series = @@ -3,3 +3,5 @@ post-install-testing pytest8 shebang.patch fix_BIN_OFFSETS_MAX +fix_import_cookbook.patch +no_psyco.patch View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/c11ebb53f0cd21910117267f5d44d8270a7202c7...2214ed5bc1ca40d50972672132789fd5935f0421 -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/c11ebb53f0cd21910117267f5d44d8270a7202c7...2214ed5bc1ca40d50972672132789fd5935f0421 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: f33ce8f3 by Andreas Tille at 2024-04-15T01:42:42+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 14 Apr 2024 13:42:04 + +Last-Update: Mon, 15 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 14 Apr 2024 13:42:08 + +Last-Update: Mon, 15 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 14 Apr 2024 13:42:12 + +Last-Update: Mon, 15 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f33ce8f3676a2f037e36f9f9e7dfd92f7c637494 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f33ce8f3676a2f037e36f9f9e7dfd92f7c637494 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mlv-smile] Pushed new tag debian/1.47-9
Andreas Tille pushed new tag debian/1.47-9 at Debian Med / mlv-smile -- View it on GitLab: https://salsa.debian.org/med-team/mlv-smile/-/tree/debian/1.47-9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/acedb][master] Fix more implicit declarations
Andreas Tille pushed to branch master at Debian Med / acedb
Commits:
e3e7870a by Andreas Tille at 2024-04-14T10:14:15+02:00
Fix more implicit declarations
- - - - -
3 changed files:
- debian/patches/acedb-parser-fixes.patch
- debian/patches/acedb-signal-fix.patch
- debian/patches/fix_implicit_declaration.patch
Changes:
=
debian/patches/acedb-parser-fixes.patch
=
@@ -5,11 +5,9 @@ Description: Fix missing declarations
`yyerror` - this is present but hidden by a CPP conditional
`yywrap` - this is not needed (grep for "YY_SKIP_YYWRAP") and
can be disabled
-diff --git a/waql/aql_.h b/waql/aql_.h
-index cde94a97896b..dd3b89116280 100644
--- a/waql/aql_.h
+++ b/waql/aql_.h
-@@ -448,7 +448,7 @@ char* aqlNodeTypeName (AqlNodeType inType);
+@@ -448,7 +448,7 @@ char* aqlNodeTypeName (AqlNodeType inTyp
char* aqlOpTypeName (AqlOpType inType);
char* aqlLocSourceTypeName (AqlLocSourceType inType);
@@ -18,8 +16,6 @@ index cde94a97896b..dd3b89116280 100644
/* predeclare lex.yy.c fns */
void yyerror (char *s);
#endif
-diff --git a/waql/aqlparse.l b/waql/aqlparse.l
-index 313375027957..bc232e0a4c48 100644
--- a/waql/aqlparse.l
+++ b/waql/aqlparse.l
@@ -102,6 +102,8 @@
@@ -31,8 +27,6 @@ index 313375027957..bc232e0a4c48 100644
letter[A-Za-z]
digit [0-9]
id{letter}({letter}|{digit}|"_")*
-diff --git a/waql/aqlparse.y b/waql/aqlparse.y
-index 9989831a4838..975ae325c14c 100644
--- a/waql/aqlparse.y
+++ b/waql/aqlparse.y
@@ -77,6 +77,8 @@ static int tokPos[1024];
=
debian/patches/acedb-signal-fix.patch
=
@@ -2,11 +2,9 @@ Author: Jeremy Sowden
Last-Update: Sat, 13 Apr 2024 22:46:17 +0100
Description: Add undeclared identifier
-diff --git a/w4/sigsubs.c b/w4/sigsubs.c
-index 2fd0c6ce9155..9d2942df1642 100644
--- a/w4/sigsubs.c
+++ b/w4/sigsubs.c
-@@ -467,6 +467,10 @@ static char *getSignalText(int sig_num)
+@@ -470,6 +470,10 @@ static char *getSignalText(int sig_num)
return "unknown";
@@ -17,7 +15,7 @@ index 2fd0c6ce9155..9d2942df1642 100644
#else
char *sig_text = NULL ;
-@@ -485,7 +489,7 @@ static char *getSignalText(int sig_num)
+@@ -488,7 +492,7 @@ static char *getSignalText(int sig_num)
char **signal_textlist = &(_sys_siglist[0]) ;
=
debian/patches/fix_implicit_declaration.patch
=
@@ -54,3 +54,22 @@ Forwarded: No (orphaned upstream)
+IdError idaAddNameType (IdCnxn ix, char *domain, BOOL isUnique, BOOL
isPrimary);
+
#endif /* !IDCURATE_ACEDB_H */
+--- a/wh/lex.h
b/wh/lex.h
+@@ -37,7 +37,7 @@
+ //
+
+ #include /* for DISK type */
+-
++#include
+
+ /* Returned by iskey, LEXKEY_IS_UNKNOWN: key is not known to acedb
+ *LEXKEY_IS_VOC: key is vocabulary entry only
+@@ -52,6 +52,7 @@ int lexMax(int t) ; /* Numbers of ent
+ int lexi2Max(int t) ; /* Numbers of cached entries of the t lexique */
+ int vocMax(int t) ;
+ void lex2clear (KEY key) ; /* call this function to clear the lex2 array */
++KEYSET lexAlphaClassList (BOOL redo);
+
+ LexKeyType iskey(KEY kk);
+ BOOL iskeyold(KEY kk); /* TRUE if
key is on disk or in first cache */
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/e3e7870a9cec40aad7e70a50f95bae382bebcda3
--
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/e3e7870a9cec40aad7e70a50f95bae382bebcda3
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[med-svn] [Git][med-team/acedb][master] Add missing declarations in w5
Andreas Tille pushed to branch master at Debian Med / acedb Commits: cf5f23d6 by Andreas Tille at 2024-04-14T10:00:01+02:00 Add missing declarations in w5 - - - - - 1 changed file: - debian/patches/fix_implicit_declaration.patch Changes: = debian/patches/fix_implicit_declaration.patch = @@ -34,3 +34,23 @@ Forwarded: No (orphaned upstream) /**/ +--- a/w5/idacedb.h b/w5/idacedb.h +@@ -49,4 +49,17 @@ ID* idaChildren (IdCnxn ix, char *domain + IdHistory* idaHistory (IdCnxn ix, char *domain, ID id, int version) ; + ID* idaChanged (IdCnxn ix, char *domain, char* timeStamp) ; + ++IdError idaError (IdCnxn ix); ++BOOL idaKill (IdCnxn ix, char* domain, ID id, mytime_t date); ++BOOL idaResurrect (IdCnxn ix, char *domain, ID id, mytime_t date); ++BOOL idaMerge (IdCnxn ix, char *domain, ID id, ID target, mytime_t date); ++BOOL idaAddName (IdCnxn ix, char *domain, ID id, char*nameType, char *newName, mytime_t date); ++BOOL idaRemoveName (IdCnxn ix, char *domain, ID id, char*nameType, char *name, mytime_t date); ++int idaVersion (IdCnxn ix, char *domain, ID id); ++BOOL idaLive (IdCnxn ix, char *domain, ID id); ++BOOL idaExists (IdCnxn ix, char *domain, ID id); ++IdError idaCreateDomain (IdCnxn ix, char *domain); ++IdError idaSetTemplate (IdCnxn ix, char *domain, char *template); ++IdError idaAddNameType (IdCnxn ix, char *domain, BOOL isUnique, BOOL isPrimary); ++ + #endif /* !IDCURATE_ACEDB_H */ View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/cf5f23d6e56cec63f969302d03230fd52ca22ec5 -- View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/cf5f23d6e56cec63f969302d03230fd52ca22ec5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/acedb][master] Fixes for missing declarations
Andreas Tille pushed to branch master at Debian Med / acedb
Commits:
ba530b19 by Andreas Tille at 2024-04-14T07:15:32+02:00
Fixes for missing declarations
- - - - -
4 changed files:
- debian/changelog
- + debian/patches/acedb-parser-fixes.patch
- + debian/patches/acedb-signal-fix.patch
- debian/patches/series
Changes:
=
debian/changelog
=
@@ -1,9 +1,13 @@
acedb (4.9.39+dfsg.02-10) UNRELEASED; urgency=medium
+ [ Andreas Tille ]
* Add missing readline/history.h header
Closes: #1066334
* Build-Depends: libtirpc-dev
+ [ Jeremy Sowden ]
+ * Fixes for missing declarations
+
-- Andreas Tille Sat, 13 Apr 2024 07:52:18 +0200
acedb (4.9.39+dfsg.02-9) unstable; urgency=medium
=
debian/patches/acedb-parser-fixes.patch
=
@@ -0,0 +1,46 @@
+Author: Jeremy Sowden
+Last-Update: Sat, 13 Apr 2024 21:48:07 +0100
+Description: Fix missing declarations
+ `yylex` - this needs to be added to the yacc source
+ `yyerror` - this is present but hidden by a CPP conditional
+ `yywrap` - this is not needed (grep for "YY_SKIP_YYWRAP") and
can be disabled
+
+diff --git a/waql/aql_.h b/waql/aql_.h
+index cde94a97896b..dd3b89116280 100644
+--- a/waql/aql_.h
b/waql/aql_.h
+@@ -448,7 +448,7 @@ char* aqlNodeTypeName (AqlNodeType inType);
+ char* aqlOpTypeName (AqlOpType inType);
+ char* aqlLocSourceTypeName (AqlLocSourceType inType);
+
+-#if defined(IBM)
++#if defined(IBM) || defined(LINUX)
+ /* predeclare lex.yy.c fns */
+ void yyerror (char *s);
+ #endif
+diff --git a/waql/aqlparse.l b/waql/aqlparse.l
+index 313375027957..bc232e0a4c48 100644
+--- a/waql/aqlparse.l
b/waql/aqlparse.l
+@@ -102,6 +102,8 @@
+
+ %}
+
++%option noyywrap
++
+ letter[A-Za-z]
+ digit [0-9]
+ id{letter}({letter}|{digit}|"_")*
+diff --git a/waql/aqlparse.y b/waql/aqlparse.y
+index 9989831a4838..975ae325c14c 100644
+--- a/waql/aqlparse.y
b/waql/aqlparse.y
+@@ -77,6 +77,8 @@ static int tokPos[1024];
+
+ /**/
+
++int yylex(void);
++
+ %}
+
+ %union {
=
debian/patches/acedb-signal-fix.patch
=
@@ -0,0 +1,28 @@
+Author: Jeremy Sowden
+Last-Update: Sat, 13 Apr 2024 22:46:17 +0100
+Description: Add undeclared identifier
+
+diff --git a/w4/sigsubs.c b/w4/sigsubs.c
+index 2fd0c6ce9155..9d2942df1642 100644
+--- a/w4/sigsubs.c
b/w4/sigsubs.c
+@@ -467,6 +467,10 @@ static char *getSignalText(int sig_num)
+
+ return "unknown";
+
++#elif defined(LINUX)
++
++ return strsignal(sig_num);
++
+ #else
+
+ char *sig_text = NULL ;
+@@ -485,7 +489,7 @@ static char *getSignalText(int sig_num)
+
+ char **signal_textlist = &(_sys_siglist[0]) ;
+
+-#if defined(LINUX) || defined(OPTERON) || defined(HP)
++#if defined(OPTERON) || defined(HP)
+ int signal_max= _NSIG ;
+ #else
+ int signal_max= _sys_nsig ;
=
debian/patches/series
=
@@ -14,3 +14,5 @@ glibc2.32.patch
just_build_efetch.patch
glibc2.38.patch
fix_implicit_declaration.patch
+acedb-parser-fixes.patch
+acedb-signal-fix.patch
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/ba530b1914146f24de719756f642ff8b5c40a1a5
--
View it on GitLab:
https://salsa.debian.org/med-team/acedb/-/commit/ba530b1914146f24de719756f642ff8b5c40a1a5
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[med-svn] [Git][med-team/acedb][master] Build-Depends: libtirpc-dev
Andreas Tille pushed to branch master at Debian Med / acedb Commits: 7c82fbd3 by Andreas Tille at 2024-04-13T08:55:39+02:00 Build-Depends: libtirpc-dev - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -2,6 +2,7 @@ acedb (4.9.39+dfsg.02-10) UNRELEASED; urgency=medium * Add missing readline/history.h header Closes: #1066334 + * Build-Depends: libtirpc-dev -- Andreas Tille Sat, 13 Apr 2024 07:52:18 +0200 = debian/control = @@ -12,7 +12,8 @@ Build-Depends: debhelper-compat (= 13), csh, flex, libfl-dev, - bison + bison, + libtirpc-dev Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/acedb Vcs-Git: https://salsa.debian.org/med-team/acedb.git View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/7c82fbd363d4d3f3de41f612bed3be73b7b2e706 -- View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/7c82fbd363d4d3f3de41f612bed3be73b7b2e706 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/acedb][master] Add missing readline/history.h header
Andreas Tille pushed to branch master at Debian Med / acedb Commits: f7f8fb6e by Andreas Tille at 2024-04-13T08:37:14+02:00 Add missing readline/history.h header - - - - - 3 changed files: - debian/changelog - + debian/patches/fix_implicit_declaration.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,10 @@ +acedb (4.9.39+dfsg.02-10) UNRELEASED; urgency=medium + + * Add missing readline/history.h header +Closes: #1066334 + + -- Andreas Tille Sat, 13 Apr 2024 07:52:18 +0200 + acedb (4.9.39+dfsg.02-9) unstable; urgency=medium [ Olivier Gayot ] = debian/patches/fix_implicit_declaration.patch = @@ -0,0 +1,36 @@ +Description: Add missing readline/history.h header +Bug-Debian: https://bugs.debian.org/1066334 +Author: Andreas Tille +Last-Update: Sat, 13 Apr 2024 07:52:18 +0200 +Forwarded: No (orphaned upstream) + +--- a/w1/acein.c b/w1/acein.c +@@ -46,6 +46,7 @@ + + #ifndef NO_READLINE + #include ++#include + #endif /*NO_READLINE */ + + /* #define DEBUG_STREAMLEVEL */ +--- a/w3/taqlmain.c b/w3/taqlmain.c +@@ -56,6 +56,7 @@ + #include + #include + #include ++#include + + /***/ + +--- a/w4/aceutils.c b/w4/aceutils.c +@@ -32,6 +32,7 @@ + + #include "acedb.h" + #include "aceio.h" ++#include + + /**/ + = debian/patches/series = @@ -13,3 +13,4 @@ libfl.patch glibc2.32.patch just_build_efetch.patch glibc2.38.patch +fix_implicit_declaration.patch View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/f7f8fb6ee1d656cd424b9d91936fa05596d89f82 -- View it on GitLab: https://salsa.debian.org/med-team/acedb/-/commit/f7f8fb6ee1d656cd424b9d91936fa05596d89f82 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 2bff17cd by Andreas Tille at 2024-04-13T01:43:33+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 12 Apr 2024 13:42:05 + +Last-Update: Sat, 13 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 12 Apr 2024 13:42:07 + +Last-Update: Sat, 13 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 12 Apr 2024 13:42:08 + +Last-Update: Sat, 13 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2bff17cd507294a8c1dcc881220ba9e17a2ede2b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2bff17cd507294a8c1dcc881220ba9e17a2ede2b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: c89063b5 by Andreas Tille at 2024-04-12T01:42:46+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Apr 2024 13:42:05 + +Last-Update: Fri, 12 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Apr 2024 13:42:07 + +Last-Update: Fri, 12 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 11 Apr 2024 13:42:08 + +Last-Update: Fri, 12 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c89063b5573867d0d3a468eaec11e57278eb -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c89063b5573867d0d3a468eaec11e57278eb You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/examl] Pushed new tag debian/3.0.22-5
Andreas Tille pushed new tag debian/3.0.22-5 at Debian Med / examl -- View it on GitLab: https://salsa.debian.org/med-team/examl/-/tree/debian/3.0.22-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/examl][master] 3 commits: Forward patch
Andreas Tille pushed to branch master at Debian Med / examl Commits: 9c829cce by Andreas Tille at 2024-04-11T16:19:45+02:00 Forward patch - - - - - d787d37a by Andreas Tille at 2024-04-11T16:20:02+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 3694fbb9 by Andreas Tille at 2024-04-11T16:24:18+02:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - debian/patches/fix_implicit_declaration.patch Changes: = debian/changelog = @@ -1,9 +1,10 @@ -examl (3.0.22-5) UNRELEASED; urgency=medium +examl (3.0.22-5) unstable; urgency=medium * Add missing include Closes: #1066386 + * Standards-Version: 4.7.0 (routine-update) - -- Andreas Tille Thu, 11 Apr 2024 16:15:37 +0200 + -- Andreas Tille Thu, 11 Apr 2024 16:21:07 +0200 examl (3.0.22-4) unstable; urgency=medium = debian/control = @@ -7,7 +7,7 @@ Build-Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/examl Vcs-Git: https://salsa.debian.org/med-team/examl.git Homepage: https://github.com/stamatak/ExaML = debian/patches/fix_implicit_declaration.patch = @@ -2,6 +2,7 @@ Desciption: Add missing include Bug-Debian: https://bugs.debian.org/1066386 Author: Andreas Tille Last-Update: Thu, 11 Apr 2024 16:15:37 +0200 +Forwarded: https://github.com/stamatak/ExaML/issues/20 --- a/examl/quartets.c +++ b/examl/quartets.c View it on GitLab: https://salsa.debian.org/med-team/examl/-/compare/ecd5d698ed445d64b49d6091f043eba02aca8968...3694fbb9c9524925387a703ecfd4f8cac0d32797 -- View it on GitLab: https://salsa.debian.org/med-team/examl/-/compare/ecd5d698ed445d64b49d6091f043eba02aca8968...3694fbb9c9524925387a703ecfd4f8cac0d32797 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/examl][master] Add missing include
Andreas Tille pushed to branch master at Debian Med / examl Commits: ecd5d698 by Andreas Tille at 2024-04-11T16:16:57+02:00 Add missing include - - - - - 3 changed files: - debian/changelog - + debian/patches/fix_implicit_declaration.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,10 @@ +examl (3.0.22-5) UNRELEASED; urgency=medium + + * Add missing include +Closes: #1066386 + + -- Andreas Tille Thu, 11 Apr 2024 16:15:37 +0200 + examl (3.0.22-4) unstable; urgency=medium * Packaging update = debian/patches/fix_implicit_declaration.patch = @@ -0,0 +1,15 @@ +Desciption: Add missing include +Bug-Debian: https://bugs.debian.org/1066386 +Author: Andreas Tille +Last-Update: Thu, 11 Apr 2024 16:15:37 +0200 + +--- a/examl/quartets.c b/examl/quartets.c +@@ -40,6 +40,7 @@ + #include + #include + #include ++#include + #include + #include + #include = debian/patches/series = @@ -1,2 +1,3 @@ hardening.patch simde +fix_implicit_declaration.patch View it on GitLab: https://salsa.debian.org/med-team/examl/-/commit/ecd5d698ed445d64b49d6091f043eba02aca8968 -- View it on GitLab: https://salsa.debian.org/med-team/examl/-/commit/ecd5d698ed445d64b49d6091f043eba02aca8968 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libpsortb][master] 3 commits: Build-Depends: s/pkg-config/pkgconf/
Andreas Tille pushed to branch master at Debian Med / libpsortb Commits: 38e9656b by Andreas Tille at 2024-04-11T15:55:13+02:00 Build-Depends: s/pkg-config/pkgconf/ - - - - - 1fa3f604 by Andreas Tille at 2024-04-11T15:55:30+02:00 routine-update: Standards-Version: 4.7.0 - - - - - e012d8d5 by Andreas Tille at 2024-04-11T15:56:33+02:00 routine-update: Ready to upload to unstable - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,11 +1,13 @@ -libpsortb (1.0+dfsg-6) UNRELEASED; urgency=medium +libpsortb (1.0+dfsg-6) unstable; urgency=medium * Drop unused debug functions * Fix implicit declaration Closes: #1066475 * Add DEP3 Forwarded field + * Build-Depends: s/pkg-config/pkgconf/ + * Standards-Version: 4.7.0 (routine-update) - -- Andreas Tille Thu, 11 Apr 2024 15:13:23 +0200 + -- Andreas Tille Thu, 11 Apr 2024 15:55:51 +0200 libpsortb (1.0+dfsg-5) unstable; urgency=medium = debian/control = @@ -8,8 +8,8 @@ Build-Depends: debhelper-compat (= 13), libsvm-dev, libsquid-dev, libhmmer2-dev, - pkg-config -Standards-Version: 4.6.0 + pkgconf +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libpsortb Vcs-Git: https://salsa.debian.org/med-team/libpsortb.git Homepage: https://www.psort.org/ View it on GitLab: https://salsa.debian.org/med-team/libpsortb/-/compare/cc41e1399501b51728f030db578f495ec888368d...e012d8d5064d68dce0d9c37283097e13bc72569a -- View it on GitLab: https://salsa.debian.org/med-team/libpsortb/-/compare/cc41e1399501b51728f030db578f495ec888368d...e012d8d5064d68dce0d9c37283097e13bc72569a You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libpsortb] Pushed new tag debian/1.0+dfsg-6
Andreas Tille pushed new tag debian/1.0+dfsg-6 at Debian Med / libpsortb -- View it on GitLab: https://salsa.debian.org/med-team/libpsortb/-/tree/debian/1.0+dfsg-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/hmmer2] Pushed new tag debian/2.3.2+dfsg-12
Andreas Tille pushed new tag debian/2.3.2+dfsg-12 at Debian Med / hmmer2 -- View it on GitLab: https://salsa.debian.org/med-team/hmmer2/-/tree/debian/2.3.2+dfsg-12 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/ampliconnoise] Pushed new tag debian/1.29-11
Andreas Tille pushed new tag debian/1.29-11 at Debian Med / ampliconnoise -- View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/tree/debian/1.29-11 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: f1f17e2f by Andreas Tille at 2024-04-11T01:42:30+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Apr 2024 13:42:04 + +Last-Update: Thu, 11 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Apr 2024 13:42:08 + +Last-Update: Thu, 11 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 10 Apr 2024 13:42:12 + +Last-Update: Thu, 11 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1f17e2fd9f9050b70239475be107b2026434ee1 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1f17e2fd9f9050b70239475be107b2026434ee1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/microbiomeutil][master] 6 commits: Fix implicit declaration of function isprint
Andreas Tille pushed to branch master at Debian Med / microbiomeutil Commits: 759fcdab by Andreas Tille at 2024-04-10T15:39:08+02:00 Fix implicit declaration of function isprint - - - - - a4992f6e by Andreas Tille at 2024-04-10T15:39:57+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 879ba250 by Andreas Tille at 2024-04-10T13:40:09+00:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - b34d83bb by Andreas Tille at 2024-04-10T15:59:52+02:00 Lintian-overrides (see lintian bug #1017966) - - - - - 480abe4f by Andreas Tille at 2024-04-10T16:03:01+02:00 Add DEP3 field Forwarded: no (upstream is dead) - - - - - 4ca75718 by Andreas Tille at 2024-04-10T16:06:28+02:00 Upload to unstable - - - - - 11 changed files: - debian/changelog - debian/control - debian/patches/cross.patch - debian/patches/enable_tests_in_local_dir.patch - debian/patches/find_relocated_libraries.patch - debian/patches/find_relocated_resources.patch - debian/patches/fix_perl_interpreter.patch - debian/patches/hardening.patch - + debian/patches/implicit-function.patch - debian/patches/series - + debian/source/lintian-overrides Changes: = debian/changelog = @@ -1,3 +1,14 @@ +microbiomeutil (20101212+dfsg1-6) unstable; urgency=medium + + * Fix implicit declaration of function isprint +Closes: #1066532 + * Standards-Version: 4.7.0 (routine-update) + * Use secure URI in Homepage field. + * Lintian-overrides (see lintian bug #1017966) + * Add DEP3 field "Forwarded: no (upstream is dead)" + + -- Andreas Tille Wed, 10 Apr 2024 16:03:07 +0200 + microbiomeutil (20101212+dfsg1-5) unstable; urgency=medium [ Helmut Grohne ] = debian/control = @@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper -Standards-Version: 4.6.0 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git -Homepage: http://microbiomeutil.sourceforge.net/ +Homepage: https://microbiomeutil.sourceforge.net/ Rules-Requires-Root: no Package: microbiomeutil = debian/patches/cross.patch = @@ -2,6 +2,7 @@ Last-Update: Sun, 9 Jan 2022 20:11:27 +0100 Author: Helmut Grohne Bug-Debian: https://bugs.debian.org/1003411 Description: Do not hard code the build architecture compiler +Forwarded: no (upstream is dead) --- microbiomeutil-20101212+dfsg1.orig/NAST-iEr/Makefile +++ microbiomeutil-20101212+dfsg1/NAST-iEr/Makefile = debian/patches/enable_tests_in_local_dir.patch = @@ -2,6 +2,7 @@ Author: Andreas Tille Last-Update: Wed, 20 Jan 2016 09:10:18 +0100 Description: To run build time tests enable running the scripts from build path +Forwarded: no (upstream is dead) --- a/NAST-iEr/run_NAST-iEr.pl +++ b/NAST-iEr/run_NAST-iEr.pl = debian/patches/find_relocated_libraries.patch = @@ -1,6 +1,8 @@ -# Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink. -# So I'm hard-coding the location to get around this. -# Patch added by Tim Booth, see changelog +Description: Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink. + So hard-coding the location to get around this. +Author: Tim Booth +Forwarded: no (upstream is dead) + --- a/ChimeraSlayer/ChimeraSlayer.pl +++ b/ChimeraSlayer/ChimeraSlayer.pl @@ -4,7 +4,9 @@ = debian/patches/find_relocated_resources.patch = @@ -1,5 +1,6 @@ Author: Tim Booth Description: Adapt path of some resources to Debian installation +Forwarded: no (upstream is dead) --- a/ChimeraSlayer/ChimeraSlayer.pl +++ b/ChimeraSlayer/ChimeraSlayer.pl = debian/patches/fix_perl_interpreter.patch = @@ -1,5 +1,6 @@ Author: Tim Booth Description: Remove wrong or fix perl interpreter location +Forwarded: no (upstream is dead) --- a/NAST-iEr/PerlLib/Fasta_reader.pm +++ b/NAST-iEr/PerlLib/Fasta_reader.pm = debian/patches/hardening.patch = @@ -1,6 +1,7 @@ Author: Andreas Tille LastChanged: Tue, 04 Jun 2013 10:35:17 +0200 Description: Enable propagation of hardening options +Forwarded: no (upstream is dead) --- a/NAST-iEr/Makefile +++ b/NAST-iEr/Makefile = debian/patches/implicit-function.patch
[med-svn] [Git][med-team/microbiomeutil] Pushed new tag debian/20101212+dfsg1-6
Andreas Tille pushed new tag debian/20101212+dfsg1-6 at Debian Med / microbiomeutil -- View it on GitLab: https://salsa.debian.org/med-team/microbiomeutil/-/tree/debian/20101212+dfsg1-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: d78d0f3b by Andreas Tille at 2024-04-10T01:43:35+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 09 Apr 2024 13:42:05 + +Last-Update: Wed, 10 Apr 2024 01:42:06 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 09 Apr 2024 13:42:09 + +Last-Update: Wed, 10 Apr 2024 01:42:07 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 09 Apr 2024 13:42:12 + +Last-Update: Wed, 10 Apr 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d78d0f3bd76a93eb6e585ba00d8833f4e59315f5 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d78d0f3bd76a93eb6e585ba00d8833f4e59315f5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8aee6801 by Andreas Tille at 2024-04-09T01:43:27+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 08 Apr 2024 13:42:04 + +Last-Update: Tue, 09 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 08 Apr 2024 13:42:06 + +Last-Update: Tue, 09 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 08 Apr 2024 13:42:07 + +Last-Update: Tue, 09 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8aee68012fdb0e933c606bb79c8033cf6437265e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8aee68012fdb0e933c606bb79c8033cf6437265e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 605ce8e1 by Andreas Tille at 2024-04-08T01:43:42+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 07 Apr 2024 13:42:04 + +Last-Update: Mon, 08 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 07 Apr 2024 13:42:08 + +Last-Update: Mon, 08 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 07 Apr 2024 13:42:12 + +Last-Update: Mon, 08 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/605ce8e1a08f8b15ed3a30fa938664cc7041f24b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/605ce8e1a08f8b15ed3a30fa938664cc7041f24b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a39003fe by Andreas Tille at 2024-04-06T01:43:44+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 05 Apr 2024 13:42:05 + +Last-Update: Sat, 06 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 05 Apr 2024 13:42:09 + +Last-Update: Sat, 06 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 05 Apr 2024 13:42:13 + +Last-Update: Sat, 06 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a39003fe4bf0b0a6c8dd463e483a278941dd9ed9 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a39003fe4bf0b0a6c8dd463e483a278941dd9ed9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/reapr] Pushed new tag debian/1.0.18+dfsg-6
Andreas Tille pushed new tag debian/1.0.18+dfsg-6 at Debian Med / reapr -- View it on GitLab: https://salsa.debian.org/med-team/reapr/-/tree/debian/1.0.18+dfsg-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/reapr][master] 7 commits: Drop hard-coded dependency on shared library. ${shlib:Depends} is working these days
Andreas Tille pushed to branch master at Debian Med / reapr
Commits:
efab69cc by Andreas Tille at 2024-04-05T08:54:42+02:00
Drop hard-coded dependency on shared library. ${shlib:Depends} is working these
days
- - - - -
790959ed by Andreas Tille at 2024-04-05T08:55:17+02:00
routine-update: Standards-Version: 4.6.2
- - - - -
e84e210e by Andreas Tille at 2024-04-05T08:55:18+02:00
routine-update: debhelper-compat 13
- - - - -
42c9e55c by Andreas Tille at 2024-04-05T08:55:22+02:00
routine-update: Rules-Requires-Root: no
- - - - -
d067012a by Andreas Tille at 2024-04-05T06:55:23+00:00
Update renamed lintian tag names in lintian overrides.
Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html
- - - - -
1463e8c2 by Andreas Tille at 2024-04-05T08:55:48+02:00
routine-update: watch file standard 4
- - - - -
8a0effed by Andreas Tille at 2024-04-05T08:58:51+02:00
routine-update: Ready to upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/source/lintian-overrides
- debian/watch
Changes:
=
debian/changelog
=
@@ -1,3 +1,21 @@
+reapr (1.0.18+dfsg-6) unstable; urgency=medium
+
+ * Team upload.
+
+ [ Matthias Klose ]
+ * Drop hard-coded dependency on shared library. ${shlib:Depends} is
+working these days.
+Closes: #1068432
+
+ [ Andreas Tille ]
+ * Standards-Version: 4.6.2 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ Update renamed lintian tag names in lintian overrides.
+ * watch file standard 4 (routine-update)
+
+ -- Andreas Tille Fri, 05 Apr 2024 08:55:49 +0200
+
reapr (1.0.18+dfsg-5) unstable; urgency=medium
* Team upload.
=
debian/control
=
@@ -3,35 +3,35 @@ Maintainer: Debian Med Packaging Team
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
libbamtools-dev,
libtabixpp-dev,
- libhts-dev (>= 1.3),
+ libhts-dev,
zlib1g-dev,
asciidoctor,
- samtools (>= 1.3),
+ samtools,
bamtools,
smalt,
r-base,
snpomatic,
tabix,
libfile-copy-link-perl
-Standards-Version: 4.4.0
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/reapr
Vcs-Git: https://salsa.debian.org/med-team/reapr.git
Homepage: https://www.sanger.ac.uk/science/tools/reapr
+Rules-Requires-Root: no
Package: reapr
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- samtools (>= 1.3),
+ samtools,
bamtools,
smalt,
r-base,
snpomatic,
tabix,
- libtabixpp0,
libfile-copy-link-perl
Description: universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
=
debian/source/lintian-overrides
=
@@ -1,2 +1,2 @@
# Upstream does not provide signed tarballs
-reapr source: debian-watch-does-not-check-gpg-signature
+reapr source: debian-watch-does-not-check-openpgp-signature
=
debian/watch
=
@@ -1,3 +1,3 @@
-version=3
+version=4
opts=pasv,repacksuffix=+dfsg,dversionmangle=s/\+(debian|dfsg|ds|deb)(\.\d+)?$//
\
ftp://ftp.sanger.ac.uk/pub/resources/software/reapr/Reapr_([0-9.]+)\.tar\.gz
View it on GitLab:
https://salsa.debian.org/med-team/reapr/-/compare/2ee630a76ae3b5990202d8edc61740a931944971...8a0effede2ecdcb8afcf1ffd8482c6b43763257b
--
View it on GitLab:
https://salsa.debian.org/med-team/reapr/-/compare/2ee630a76ae3b5990202d8edc61740a931944971...8a0effede2ecdcb8afcf1ffd8482c6b43763257b
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[med-svn] [Git][med-team/pyode] Pushed new tag debian/1.2.0.dev15-5
Andreas Tille pushed new tag debian/1.2.0.dev15-5 at Debian Med / pyode -- View it on GitLab: https://salsa.debian.org/med-team/pyode/-/tree/debian/1.2.0.dev15-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pyode][master] 5 commits: Add support for Cython 3
Andreas Tille pushed to branch master at Debian Med / pyode Commits: 9d57ecdc by Andreas Tille at 2024-04-05T08:42:29+02:00 Add support for Cython 3 - - - - - 5f48a257 by Andreas Tille at 2024-04-05T08:43:13+02:00 routine-update: Standards-Version: 4.6.2 - - - - - 978c2a8d by Andreas Tille at 2024-04-05T08:43:20+02:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - 84feabd1 by Andreas Tille at 2024-04-05T08:43:20+02:00 routine-update: Build-Depends: s/dh-python/dh-sequence-python3/ - - - - - a6517818 by Andreas Tille at 2024-04-05T08:46:11+02:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/Add-support-for-Cython-3.patch - debian/patches/series - debian/rules Changes: = debian/changelog = @@ -1,3 +1,18 @@ +pyode (1.2.0.dev15-5) unstable; urgency=medium + + * Team upload. + + [ Benjamin Drung ] + * Add support for Cython 3 +Closes: #1068428 + + [ Andreas Tille ] + * Standards-Version: 4.6.2 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) + + -- Andreas Tille Fri, 05 Apr 2024 08:43:30 +0200 + pyode (1.2.0.dev15-4) unstable; urgency=medium * Team upload. = debian/control = @@ -7,12 +7,12 @@ Section: python Priority: optional Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), - dh-python, + dh-sequence-python3, python3-all-dev, libode-dev, cython3, python3-setuptools -Standards-Version: 4.6.0 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pyode Vcs-Git: https://salsa.debian.org/med-team/pyode.git Homepage: https://github.com/filipeabperes/Py3ODE = debian/patches/Add-support-for-Cython-3.patch = @@ -0,0 +1,36 @@ +From: Benjamin Drung +Date: Fri, 5 Apr 2024 02:21:21 +0200 +Subject: Add support for Cython 3 +Bug-Debian: https://bugs.debian.org/1068428 + +See https://cython.readthedocs.io/en/latest/src/userguide/migrating_to_cy30.html + +Signed-off-by: Benjamin Drung +--- + src/declarations.pyx | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/src/declarations.pyx b/src/declarations.pyx +index b69a0e1..f274ad6 100755 +--- a/src/declarations.pyx b/src/declarations.pyx +@@ -80,8 +80,8 @@ cdef extern from "ode/ode.h": + dVector3 f2 + dVector3 t2 + +-ctypedef void dNearCallback(void* data, dGeomID o1, dGeomID o2) +-ctypedef dReal dHeightfieldGetHeight( void* p_user_data, int x, int z ) ++ctypedef void dNearCallback(void* data, dGeomID o1, dGeomID o2) except * ++ctypedef dReal dHeightfieldGetHeight( void* p_user_data, int x, int z ) except * + + ctypedef void dGetAABBFn (dGeomID, dReal aabb[6]) + ctypedef int dColliderFn (dGeomID o1, dGeomID o2, int flags, dContactGeom *contact, int skip) +@@ -322,7 +322,7 @@ cdef extern from "ode/ode.h": + void dBodySetGravityMode (dBodyID b, int mode) + int dBodyGetGravityMode (dBodyID b) + +-void dBodySetMovedCallback(dBodyID b, void (*callback)(dBodyID)) ++void dBodySetMovedCallback(dBodyID b, void (*callback)(dBodyID) except *) + + dGeomID dBodyGetFirstGeom (dBodyID b) + dGeomID dBodyGetNextGeom (dGeomID g) = debian/patches/series = @@ -1,3 +1,4 @@ 01_fix_setup.patch 02_add_shebang.patch 03_spellings.patch +Add-support-for-Cython-3.patch = debian/rules = @@ -5,4 +5,4 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all export PYBUILD_NAME = pyode %: - dh $@ --with python3 --buildsystem=pybuild + dh $@ --buildsystem=pybuild View it on GitLab: https://salsa.debian.org/med-team/pyode/-/compare/1e56c15533040559154f03f79df13453bd55928d...a651781838f9ed7baf44ee260f6367d8f1b07edc -- View it on GitLab: https://salsa.debian.org/med-team/pyode/-/compare/1e56c15533040559154f03f79df13453bd55928d...a651781838f9ed7baf44ee260f6367d8f1b07edc You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/populations] Pushed new tag debian/1.2.33+svn0120106+dfsg-6ubuntu3
Andreas Tille pushed new tag debian/1.2.33+svn0120106+dfsg-6ubuntu3 at Debian Med / populations -- View it on GitLab: https://salsa.debian.org/med-team/populations/-/tree/debian/1.2.33+svn0120106+dfsg-6ubuntu3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/populations][master] 9 commits: Apply patch from Ubunto containing
Andreas Tille pushed to branch master at Debian Med / populations
Commits:
6ab0328e by Andreas Tille at 2024-04-05T07:50:48+02:00
Apply patch from Ubunto containing
* Dont hard-code dependency on shared library.
* Properly clean the generated install file
- - - - -
c4d671de by Andreas Tille at 2024-04-05T07:51:25+02:00
routine-update: Standards-Version: 4.6.2
- - - - -
ae32b8e2 by Andreas Tille at 2024-04-05T07:51:25+02:00
routine-update: debhelper-compat 13
- - - - -
84a11259 by Andreas Tille at 2024-04-05T07:51:30+02:00
routine-update: Rules-Requires-Root: no
- - - - -
b837474c by Andreas Tille at 2024-04-05T05:51:55+00:00
Remove constraints unnecessary since bullseye (oldstable)
* Build-Depends: Replace dependency on transitional package libfreetype6-dev
with replacement libfreetype-dev (= 2.10.4+dfsg-1+deb11u1).
Changes-By: deb-scrub-obsolete
- - - - -
e67e67b9 by Andreas Tille at 2024-04-05T08:20:21+02:00
Drop broken version restriction on libfreetype-dev
- - - - -
b4870f37 by Andreas Tille at 2024-04-05T08:25:18+02:00
Lintian-overrides (see lintian bug #1017966)
- - - - -
c4fd7303 by Andreas Tille at 2024-04-05T08:27:50+02:00
Build-Depens: s/libfontconfig1-dev/libfontconfig-dev/
- - - - -
1e54f049 by Andreas Tille at 2024-04-05T08:29:44+02:00
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/rules
- + debian/source/lintian-overrides
Changes:
=
debian/changelog
=
@@ -1,3 +1,24 @@
+populations (1.2.33+svn0120106+dfsg-6ubuntu3) unstable; urgency=medium
+
+ * Team upload.
+
+ [ Matthias Klose ]
+ * Don't hard-code dependency on shared library.
+Closes: #1068424
+ * Properly clean the generated install file
+
+ [ Andreas Tille ]
+ * Standards-Version: 4.6.2 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Remove constraints unnecessary since bullseye (oldstable):
++ Build-Depends: Replace dependency on transitional package
+ libfreetype6-dev with replacement libfreetype-dev.
+ * Lintian-overrides (see lintian bug #1017966)
+ * Build-Depens: s/libfontconfig1-dev/libfontconfig-dev/
+
+ -- Andreas Tille Fri, 05 Apr 2024 08:28:03 +0200
+
populations (1.2.33+svn0120106+dfsg-6) unstable; urgency=medium
* Use DEB_HOST_GNU type for every arch since $(DEB_HOST_MULTIARCH)
=
debian/control
=
@@ -3,13 +3,13 @@ Maintainer: Debian Med Packaging Team
,
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
cmake,
qt5-qmake,
qtbase5-dev,
qttools5-dev,
- libfontconfig1-dev,
- libfreetype6-dev,
+ libfontconfig-dev,
+ libfreetype-dev,
libglib2.0-dev,
libice-dev,
libpng-dev,
@@ -18,16 +18,17 @@ Build-Depends: debhelper-compat (= 12),
libxext-dev,
libxrender-dev,
zlib1g-dev
-Standards-Version: 4.4.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/populations
Vcs-Git: https://salsa.debian.org/med-team/populations.git
Homepage: https://www.bioinformatics.org/~tryphon/populations/
+Rules-Requires-Root: no
Package: populations
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- libqt5xml5
+ ${lib:Depends}
Description: population genetic software
Populations is a population genetic software. It computes genetic
distances between populations or individuals. It builds phylogenetic
=
debian/rules
=
@@ -18,9 +18,15 @@ debian/%.install: debian/%.install.in
override_dh_auto_clean:
dh_testdir
+ rm -f debian/populations.install
rm -f src/populations
rm -rf CMakeFiles src/CMakeFiles Makefile src/Makefile src/config.h \
*.cmake src/cmake_install.cmake CMakeCache.txt \
install_manifest.txt
dh_auto_clean
dh_clean
+
+override_dh_gencontrol:
+ dh_gencontrol -- \
+ -Vlib:Depends=$(shell dpkg-query -W -f '$${Depends}' qtbase5-dev \
+ | sed -E 's/.*(libqt5xml[[:alnum:].-]+).*/\1/')
=
debian/source/lintian-overrides
=
@@ -0,0 +1,2 @@
+# See lintian bug #1017966
+populations source: source-is-missing [html/old/index.php.html]
View it on GitLab:
https://salsa.debian.org/med-team/populations/-/compare/fbc62f7a0a504e6abbde2576489b0fb42e6cbbca...1e54f0495b40f5585973a888009990851672b23a
--
View it on GitLab:
[med-svn] [Git][med-team/ltrsift][master] Revert examples package, add not-installed to silence dh_missing
Andreas Tille pushed to branch master at Debian Med / ltrsift
Commits:
0ea4fbd9 by Andreas Tille at 2024-04-05T07:42:17+02:00
Revert examples package, add not-installed to silence dh_missing
- - - - -
4 changed files:
- debian/changelog
- debian/control
- − debian/ltrsift-examples.examples
- + debian/not-installed
Changes:
=
debian/changelog
=
@@ -16,7 +16,6 @@ ltrsift (1.0.2-10) UNRELEASED; urgency=medium
(already present in machine-readable debian/copyright).
* Fix day-of-week for changelog entry 1.0.1-1.
* watch file standard 4 (routine-update)
- * Add new binary package ltrsift with example data.
-- Sascha Steinbiss Thu, 04 Apr 2024 22:16:04 +0200
=
debian/control
=
@@ -27,18 +27,3 @@ Description: postprocessing and classification of LTR
retrotransposons
structure in a hierarchical fashion, allowing the user to "sift" through the
sometimes large results of de novo prediction software. It also offers
customizable filtering and classification functionality.
-
-Package: ltrsift-examples
-Architecture: all
-Depends: ${misc:Depends},
-Suggests: ltrsift
-Description: postprocessing and classification of LTR retrotransposons (sample
data)
- LTRsift is a graphical desktop tool for semi-automatic postprocessing of de
- novo predicted LTR retrotransposon annotations, such as the ones generated by
- LTRharvest and LTRdigest. Its user-friendly interface displays LTR
- retrotransposon candidates, their putative families and their internal
- structure in a hierarchical fashion, allowing the user to "sift" through the
- sometimes large results of de novo prediction software. It also offers
- customizable filtering and classification functionality.
- .
- This package contains example data to test the LTRsift functionality.
=
debian/ltrsift-examples.examples deleted
=
@@ -1 +0,0 @@
-debian/tmp/usr/sample_data/*
=
debian/not-installed
=
@@ -0,0 +1 @@
+usr/sample_data
View it on GitLab:
https://salsa.debian.org/med-team/ltrsift/-/commit/0ea4fbd94b5c138ca9a23f63a6b349f5bff197f7
--
View it on GitLab:
https://salsa.debian.org/med-team/ltrsift/-/commit/0ea4fbd94b5c138ca9a23f63a6b349f5bff197f7
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: fbbaf8ea by Andreas Tille at 2024-04-05T01:43:39+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 04 Apr 2024 13:42:04 + +Last-Update: Fri, 05 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 04 Apr 2024 13:42:09 + +Last-Update: Fri, 05 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 04 Apr 2024 13:42:12 + +Last-Update: Fri, 05 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbbaf8ea02d5d5739ad151a6c3dde553bdcf5a81 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbbaf8ea02d5d5739ad151a6c3dde553bdcf5a81 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 17c19352 by Andreas Tille at 2024-04-04T01:43:33+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 03 Apr 2024 13:42:06 + +Last-Update: Thu, 04 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 03 Apr 2024 13:42:10 + +Last-Update: Thu, 04 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 03 Apr 2024 13:42:13 + +Last-Update: Thu, 04 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/17c193520185be41c6b458ede734f0a1ef3fcb96 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/17c193520185be41c6b458ede734f0a1ef3fcb96 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 759f0ce2 by Andreas Tille at 2024-04-03T01:43:35+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 02 Apr 2024 13:42:04 + +Last-Update: Wed, 03 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 02 Apr 2024 13:42:08 + +Last-Update: Wed, 03 Apr 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 02 Apr 2024 13:42:12 + +Last-Update: Wed, 03 Apr 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/759f0ce2137902ad0370a078841ce88d0900501f -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/759f0ce2137902ad0370a078841ce88d0900501f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: a66f6ec1 by Andreas Tille at 2024-04-02T01:43:36+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 01 Apr 2024 13:42:05 + +Last-Update: Tue, 02 Apr 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 01 Apr 2024 13:42:09 + +Last-Update: Tue, 02 Apr 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 01 Apr 2024 13:42:12 + +Last-Update: Tue, 02 Apr 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a66f6ec192124a5db937859839d6cb2e28e5bcaf -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a66f6ec192124a5db937859839d6cb2e28e5bcaf You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 7b13e338 by Andreas Tille at 2024-04-01T01:43:39+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 31 Mar 2024 13:42:05 + +Last-Update: Mon, 01 Apr 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 31 Mar 2024 13:42:09 + +Last-Update: Mon, 01 Apr 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 31 Mar 2024 13:42:13 + +Last-Update: Mon, 01 Apr 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7b13e338c3df700367003669216ba57b5485851c -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7b13e338c3df700367003669216ba57b5485851c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libsbml] Pushed new tag debian/5.20.2+dfsg-3
Andreas Tille pushed new tag debian/5.20.2+dfsg-3 at Debian Med / libsbml -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/tree/debian/5.20.2+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libsbml][master] 3 commits: Drop the Python3-Version attribute
Andreas Tille pushed to branch master at Debian Med / libsbml Commits: 9f4614e7 by Andreas Tille at 2024-03-30T20:46:19+01:00 Drop the Python3-Version attribute - - - - - 6e7de4ce by Andreas Tille at 2024-03-30T21:36:20+01:00 Fix doc-base file - - - - - d1ae2552 by Andreas Tille at 2024-03-30T21:36:50+01:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - debian/control - debian/libsbml5-doc.doc-base Changes: = debian/changelog = @@ -1,3 +1,11 @@ +libsbml (5.20.2+dfsg-3) unstable; urgency=medium + + * Drop the Python3-Version attribute +Closes: #1068105 + * Fix doc-base file + + -- Andreas Tille Sat, 30 Mar 2024 21:36:28 +0100 + libsbml (5.20.2+dfsg-2.1) unstable; urgency=medium * Non-maintainer upload. = debian/control = @@ -36,7 +36,6 @@ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libsbml Vcs-Git: https://salsa.debian.org/med-team/libsbml.git Homepage: http://www.sbml.org/ -X-Python3-Version: 3.11 Rules-Requires-Root: no Testsuite: autopkgtest-pkg-python = debian/libsbml5-doc.doc-base = @@ -8,5 +8,5 @@ Abstract: System Biology Markup Language library Section: Science/Biology Format: HTML -Files: /usr/share/doc/libsbml5/*api/ /usr/share/doc/libsbml5/index.html -Index: /usr/share/doc/libsbml5/index.html +Files: /usr/share/doc/libsbml5-dev/*api/ /usr/share/doc/libsbml5/index.html +Index: /usr/share/doc/libsbml5-dev/index.html View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/927b09bb068dabaffac986abf2b742a24f0c43ca...d1ae2552405e41950478f0693b164b1523b47d79 -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/927b09bb068dabaffac986abf2b742a24f0c43ca...d1ae2552405e41950478f0693b164b1523b47d79 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 06e14788 by Andreas Tille at 2024-03-30T01:43:19+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 29 Mar 2024 13:42:05 + +Last-Update: Sat, 30 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 29 Mar 2024 13:42:07 + +Last-Update: Sat, 30 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 29 Mar 2024 13:42:08 + +Last-Update: Sat, 30 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06e14788f671451415821c68e7e014ab642ae139 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06e14788f671451415821c68e7e014ab642ae139 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8ec82b6d by Andreas Tille at 2024-03-29T01:43:28+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 28 Mar 2024 13:42:04 + +Last-Update: Fri, 29 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 28 Mar 2024 13:42:09 + +Last-Update: Fri, 29 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 28 Mar 2024 13:42:12 + +Last-Update: Fri, 29 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ec82b6d3df1107433b8f80fe55695f023c26cf3 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ec82b6d3df1107433b8f80fe55695f023c26cf3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/ctn] Pushed new tag debian/3.2.0_dfsg-7.1
Andreas Tille pushed new tag debian/3.2.0_dfsg-7.1 at Debian Med / ctn -- View it on GitLab: https://salsa.debian.org/med-team/ctn/-/tree/debian/3.2.0_dfsg-7.1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: dfc23f5a by Andreas Tille at 2024-03-28T01:43:22+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 27 Mar 2024 13:42:05 + +Last-Update: Thu, 28 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 27 Mar 2024 13:42:09 + +Last-Update: Thu, 28 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Wed, 27 Mar 2024 13:42:12 + +Last-Update: Thu, 28 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dfc23f5a4000f9f605a9c9cf6a3df61ac0b774f2 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dfc23f5a4000f9f605a9c9cf6a3df61ac0b774f2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 2dccb63a by Andreas Tille at 2024-03-27T01:43:22+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 26 Mar 2024 13:42:04 + +Last-Update: Wed, 27 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 26 Mar 2024 13:42:09 + +Last-Update: Wed, 27 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 26 Mar 2024 13:42:12 + +Last-Update: Wed, 27 Mar 2024 01:42:07 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2dccb63abe890fb5e47b09cbcbc0db84391e3171 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2dccb63abe890fb5e47b09cbcbc0db84391e3171 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 8f5d77c6 by Andreas Tille at 2024-03-26T01:43:11+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 25 Mar 2024 13:42:05 + +Last-Update: Tue, 26 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 25 Mar 2024 13:42:09 + +Last-Update: Tue, 26 Mar 2024 01:42:05 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 25 Mar 2024 13:42:12 + +Last-Update: Tue, 26 Mar 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f5d77c6c08e0f27952f8283b4c475dc219265fa -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f5d77c6c08e0f27952f8283b4c475dc219265fa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libbpp-seq] Pushed new tag debian/2.4.1-11
Andreas Tille pushed new tag debian/2.4.1-11 at Debian Med / libbpp-seq -- View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/-/tree/debian/2.4.1-11 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libbpp-seq][master] 3 commits: Drop hard-coded dependency on libbpp-core4
Andreas Tille pushed to branch master at Debian Med / libbpp-seq
Commits:
15f78ce6 by Andreas Tille at 2024-03-25T11:01:56+01:00
Drop hard-coded dependency on libbpp-core4
- - - - -
2ce29e7c by Andreas Tille at 2024-03-25T11:30:10+01:00
Lintian-overrides for version-substvar-for-external-package
- - - - -
95d3fad4 by Andreas Tille at 2024-03-25T11:33:26+01:00
Upload to unstable
- - - - -
3 changed files:
- debian/changelog
- debian/control
- + debian/source/lintian-overrides
Changes:
=
debian/changelog
=
@@ -1,3 +1,14 @@
+libbpp-seq (2.4.1-11) unstable; urgency=medium
+
+ [ Dann Frazier ]
+ * Drop hard-coded dependency on libbpp-core4
+Closes: #1067586
+
+ [ Andreas Tille ]
+ * Lintian-overrides for version-substvar-for-external-package
+
+ -- Andreas Tille Mon, 25 Mar 2024 11:30:15 +0100
+
libbpp-seq (2.4.1-10.1) unstable; urgency=medium
* Non-maintainer upload.
=
debian/control
=
@@ -39,8 +39,7 @@ Architecture: any
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
- ${misc:Depends},
- libbpp-core4
+ ${misc:Depends}
Pre-Depends: ${misc:Pre-Depends}
Description: Bio++ Sequence library
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
=
debian/source/lintian-overrides
=
@@ -0,0 +1,3 @@
+# This is a false positive since formerly libbpp-seq12 was build by this
+libbpp-seq source: version-substvar-for-external-package Conflicts
${source:Version} libbpp-seq12t64 -> libbpp-seq12 [debian/control:37]
+
View it on GitLab:
https://salsa.debian.org/med-team/libbpp-seq/-/compare/0125f0f6b78e6774305e1404be085d215fcfa8bb...95d3fad4b8d298903d42fd6847e3254db03da6ec
--
View it on GitLab:
https://salsa.debian.org/med-team/libbpp-seq/-/compare/0125f0f6b78e6774305e1404be085d215fcfa8bb...95d3fad4b8d298903d42fd6847e3254db03da6ec
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 4d75cdb0 by Andreas Tille at 2024-03-25T01:43:23+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 24 Mar 2024 13:42:05 + +Last-Update: Mon, 25 Mar 2024 01:42:05 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 24 Mar 2024 13:42:09 + +Last-Update: Mon, 25 Mar 2024 01:42:06 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Sun, 24 Mar 2024 13:42:12 + +Last-Update: Mon, 25 Mar 2024 01:42:06 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4d75cdb00fe22897ffe3338be3fdb1c2e5d588aa -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4d75cdb00fe22897ffe3338be3fdb1c2e5d588aa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 842f7575 by Andreas Tille at 2024-03-23T01:43:24+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 22 Mar 2024 13:42:05 + +Last-Update: Sat, 23 Mar 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 22 Mar 2024 13:42:10 + +Last-Update: Sat, 23 Mar 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Fri, 22 Mar 2024 13:42:13 + +Last-Update: Sat, 23 Mar 2024 01:42:04 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/842f757570e84d555ac74a873c623c2a4fa92f4b -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/842f757570e84d555ac74a873c623c2a4fa92f4b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/smrtanalysis][master] 5 commits: Add fake watch file
Andreas Tille pushed to branch master at Debian Med / smrtanalysis Commits: 72df0e4d by Andreas Tille at 2022-02-13T14:11:08+01:00 Add fake watch file - - - - - 1d779df4 by Andreas Tille at 2022-02-13T14:15:31+01:00 Rebuild against updated libs - - - - - cd467d4e by Andreas Tille at 2022-02-13T14:15:48+01:00 routine-update: Standards-Version: 4.6.0 - - - - - 01c27bc0 by Andreas Tille at 2022-02-13T14:21:13+01:00 No watch file for native package - - - - - 333ef4ad by Andreas Tille at 2022-02-13T14:22:55+01:00 Upload to unstable - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian/changelog = @@ -1,3 +1,11 @@ +smrtanalysis (0~20210112) unstable; urgency=medium + + * Rebuild against updated libs +Closes: #1005433 + * Standards-Version: 4.6.0 (routine-update) + + -- Andreas Tille Sun, 13 Feb 2022 14:21:26 +0100 + smrtanalysis (0~20210111) unstable; urgency=medium * Make smrtanalysis-dev Architecture: any and add its dependencies to = debian/control = @@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 13), python3-pbconsensuscore, libpbseq-dev, libpbbam-dev -Standards-Version: 4.5.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/smrtanalysis Vcs-Git: https://salsa.debian.org/med-team/smrtanalysis.git Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/67b0db0dd1c6c8860859125f4b1fde7872696dcb...333ef4ad41459b0ca49953487df871d6bf21f79b -- View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/67b0db0dd1c6c8860859125f4b1fde7872696dcb...333ef4ad41459b0ca49953487df871d6bf21f79b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/smrtanalysis] Pushed new tag debian/0_20210112
Andreas Tille pushed new tag debian/0_20210112 at Debian Med / smrtanalysis -- View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/tree/debian/0_20210112 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/dcmtk][master] [armhf, armel] No need to drop graphviz from build-depends-indep
Andreas Tille pushed to branch master at Debian Med / dcmtk Commits: da72b727 by Emanuele Rocca at 2024-03-22T11:13:49+01:00 [armhf,armel] No need to drop graphviz from build-depends-indep Build-Depends-Indep are only used to build the arch:all packages, and currently all the arch:all autobuilder run on amd64. - - - - - 1 changed file: - debian/control Changes: = debian/control = @@ -17,7 +17,7 @@ Build-Depends: dpkg-dev (>= 1.22.5), cmake, libxml2-dev, zlib1g-dev Build-Depends-Indep: doxygen, - graphviz [!armhf !armel] + graphviz Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dcmtk Vcs-Git: https://salsa.debian.org/med-team/dcmtk.git View it on GitLab: https://salsa.debian.org/med-team/dcmtk/-/commit/da72b7276f37c927bc8064f41790948ccc93d372 -- View it on GitLab: https://salsa.debian.org/med-team/dcmtk/-/commit/da72b7276f37c927bc8064f41790948ccc93d372 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
