Bug#895531: Unable to import neuron in python3

[Matthias Klumpp]

i!
Interesting, this works here without problems (vanilla Debian installation):

```
$ python3
Python 3.6.5rc1 (default, Mar 14 2018, 10:54:23)
[GCC 7.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import neuron
NEURON -- VERSION 7.5 master (6b4c19f) 2017-09-25
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2016
See http://neuron.yale.edu/neuron/credits

>>>
```

The "nrn" module is a built-in module. Do you have any bits of a
different NEURON installation floating around that might interfere
with the package? Could you run the Python interpreter in verbose mode
(python3 -v) and try to import the module again (and paste the
output)? That would help to determine what is different between the
attempts to load the module.

Cheers,
   Matthias

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cypari2 is marked for autoremoval from testing

[Debian testing autoremoval watch]

cypari2 1.1.4-2 is marked for autoremoval from testing on 2018-05-07

It is affected by these RC bugs:
895215: cypari2: cypari2 FTBFS with dh-python >= 3.20180313


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double-conversion 2.0.1-5 MIGRATED to testing

[Debian testing watch]

FYI: The status of the double-conversion source package
in Debian's testing distribution has changed.

  Previous version: 2.0.1-4
  Current version:  2.0.1-5

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petsc 3.8.4+dfsg1-2 MIGRATED to testing

[Debian testing watch]

FYI: The status of the petsc source package
in Debian's testing distribution has changed.

  Previous version: 3.8.4+dfsg1-1
  Current version:  3.8.4+dfsg1-2

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kbibtex is marked for autoremoval from testing

[Debian testing autoremoval watch]

kbibtex 0.8~20170819git31a77b27e8e83836e-3 is marked for autoremoval from 
testing on 2018-04-17

It is affected by these RC bugs:
893538: kbibtex: kbibtex FTBFS: delegate-failed rsvg-convert


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Bug#895748: mpi-default-dev: add riscv64 to list of MPI arches

[Drew Parsons]

On Sun, 2018-04-15 at 18:33 +0200, Manuel A. Fernandez Montecelo wrote:
> 
> > Whether default to openmpi or to mpich, your choice.
> 
> mpich fails due to tests in the current buildd, and although ideally
> we'll work on it and get it properly fixed soon, for riscv64 it'd
> better
> be "openmpi" at the moment -- which is the defalt for almost all
> other
> arches anyway, as you say further down in your message.

Thanks Manuel, that's a good reason for assigning openmpi to the
riscv64 defaults then.

Drew

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Bug#895771: marked as done (python-bumps: autopkgtest fails since matplotlib 2.2.2-1 renamed NavigationToolbar2Wx to NavigationToolbar2WxAgg)

[Debian Bug Tracking System]

Your message dated Mon, 16 Apr 2018 11:38:16 +1000
with message-id <4609645.1RKcBvIM0S@simurgh>
and subject line Re: Bug#895771: python-bumps: autopkgtest fails since 
matplotlib 2.2.2-1 renamed NavigationToolbar2Wx to NavigationToolbar2WxAgg
has caused the Debian Bug report #895771,
regarding python-bumps: autopkgtest fails since matplotlib 2.2.2-1 renamed 
NavigationToolbar2Wx to NavigationToolbar2WxAgg
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
895771: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895771
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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-bumps
Version: 0.7.6-3
Severity: normal
User: ci-t...@tracker.debian.org
Usertags: progression

Since the upload of matplotlib version 2.2.2-1, apparently the module
NavigationToolbar2Wx from matplotlib.backends.backend_wxagg isn't there
anymore. As I can only assume (please reassign this bug to matplotlib if
I am wrong), this was done intentionally¹, I am filing this bug against
python-bumps: your autopkgtest² fails since than with the following error:

==
ERROR: Failure: ImportError (cannot import name NavigationToolbar2Wx)
--
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.7/dist-packages/bumps/gui/data_view.py", line
10, in 
from matplotlib.backends.backend_wxagg import NavigationToolbar2Wx
as Toolbar
ImportError: cannot import name NavigationToolbar2Wx

It looks like this bug may be of higher severity if the package stops
working due to this, but as I lack the insight to this package, I file
it as normal. Please investigate the situation.

Paul

¹ It looks like instead of NavigationToolbar2Wx it is now available as
NavigationToolbar2WxAgg; see
https://salsa.debian.org/python-team/modules/matplotlib/blob/35f7db8c0db60ed8e3daf2e6ba627a5a4db49cd6/lib/matplotlib/backends/backend_wxagg.py
² https://ci.debian.net/packages/p/python-bumps



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--- End Message ---
--- Begin Message ---
Version: 0.7.6-4

Already fixed and tested on ci.d.n:

python-bumps (0.7.6-4) unstable; urgency=medium 

 * Update to new matplotlib API. 
 * Add missing dependencies to packages. 

-- Stuart Prescott   Mon, 16 Apr 2018 00:28:33 +1000 


> It looks like this bug may be of higher severity if the package stops
> working due to this, but as I lack the insight to this package, I file
> it as normal. Please investigate the situation.

Indeed, this would be RC since it would cause it to FTBFS as the tests would 
also fail at build time.

> ¹ It looks like instead of NavigationToolbar2Wx it is now available as
> NavigationToolbar2WxAgg; see
> https://salsa.debian.org/python-team/modules/matplotlib/blob/35f7db8c0db60ed
> 8e3daf2e6ba627a5a4db49cd6/lib/matplotlib/backends/backend_wxagg.py ²
> https://ci.debian.net/packages/p/python-bumps

There's a slight difference between the two (inheritance plus one extra 
function) but I think you are right and that's exactly what I uploaded and the 
PR I have sent upstream

https://github.com/bumps/bumps/pull/15

cheers
Stuart

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RE:matplotlib: missing depends on python(3)-kiwisolver

[PICCA Frederic-Emmanuel]

there is two problemes.

kiwisolver MUST provide -dbg packages AND matplotlib should depends on these 
packages once available.

Cheers

Frederic
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Processed: Re: matplotlib: missing depends on python(3)-kiwisolver

[Debian Bug Tracking System]

Processing control commands:

> severity -1 normal
Bug #895763 [src:matplotlib] matplotlib: missing depends on python(3)-kiwisolver
Severity set to 'normal' from 'serious'
> retitle -1 autopkgtest fails since matplotlib 2.2.2-1
Bug #895763 [src:matplotlib] matplotlib: missing depends on python(3)-kiwisolver
Changed Bug title to 'autopkgtest fails since matplotlib 2.2.2-1' from 
'matplotlib: missing depends on python(3)-kiwisolver'.
> affects -1 - pyfai - python-ltfatpy
Bug #895763 [src:matplotlib] autopkgtest fails since matplotlib 2.2.2-1
Removed indication that 895763 affects pyfai and python-ltfatpy
> clone -1 -2
Bug #895763 [src:matplotlib] autopkgtest fails since matplotlib 2.2.2-1
Bug 895763 cloned as bug 895776
> reassign -1 src:python-ltfatpy
Bug #895763 [src:matplotlib] autopkgtest fails since matplotlib 2.2.2-1
Bug reassigned from package 'src:matplotlib' to 'src:python-ltfatpy'.
No longer marked as found in versions matplotlib/2.2.2-1.
Ignoring request to alter fixed versions of bug #895763 to the same values 
previously set
> reassign -1 src:pyfai
Bug #895763 [src:python-ltfatpy] autopkgtest fails since matplotlib 2.2.2-1
Bug reassigned from package 'src:python-ltfatpy' to 'src:pyfai'.
Ignoring request to alter found versions of bug #895763 to the same values 
previously set
Ignoring request to alter fixed versions of bug #895763 to the same values 
previously set

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Bug#895771: python-bumps: autopkgtest fails since matplotlib 2.2.2-1 renamed NavigationToolbar2Wx to NavigationToolbar2WxAgg

[Paul Gevers]

Source: python-bumps
Version: 0.7.6-3
Severity: normal
User: ci-t...@tracker.debian.org
Usertags: progression

Since the upload of matplotlib version 2.2.2-1, apparently the module
NavigationToolbar2Wx from matplotlib.backends.backend_wxagg isn't there
anymore. As I can only assume (please reassign this bug to matplotlib if
I am wrong), this was done intentionally¹, I am filing this bug against
python-bumps: your autopkgtest² fails since than with the following error:

==
ERROR: Failure: ImportError (cannot import name NavigationToolbar2Wx)
--
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.7/dist-packages/bumps/gui/data_view.py", line
10, in 
from matplotlib.backends.backend_wxagg import NavigationToolbar2Wx
as Toolbar
ImportError: cannot import name NavigationToolbar2Wx

It looks like this bug may be of higher severity if the package stops
working due to this, but as I lack the insight to this package, I file
it as normal. Please investigate the situation.

Paul

¹ It looks like instead of NavigationToolbar2Wx it is now available as
NavigationToolbar2WxAgg; see
https://salsa.debian.org/python-team/modules/matplotlib/blob/35f7db8c0db60ed8e3daf2e6ba627a5a4db49cd6/lib/matplotlib/backends/backend_wxagg.py
² https://ci.debian.net/packages/p/python-bumps



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Bug#895769: skimage: autopkgtest fails since matplotlib 2.2.2-1 due to new deprecation warning

[Paul Gevers]

Source: skimage
Version: 0.13.1-2
Severity: normal
User: ci-t...@tracker.debian.org
Usertags: progression

Since the upload of matplotlib version 2.2.2-1, it emits a deprecation
warning: "The 'box-forced' keyword argument is deprecated since 2.2".
Your autopkgtest¹ fails since than 2*7 errors, because it errors out on
unexpected warnings. Could you please fix your tests and/or the code?

Paul

¹ https://ci.debian.net/packages/s/skimage



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Bug#867496: marked as done (morse-simulator FTBFS: ImportError: No module named 'version')

[Debian Bug Tracking System]

Your message dated Sun, 15 Apr 2018 18:06:25 +
with message-id 
and subject line Bug#853557: fixed in morse-simulator 1.4-3
has caused the Debian Bug report #853557,
regarding morse-simulator FTBFS: ImportError: No module named 'version'
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: morse-simulator
Version: 1.4-2
Severity: important
User: python-modules-t...@lists.alioth.debian.org
Usertags: sphinx1.5

Dear maintainer,

I am about to upload Sphinx 1.5 to unstable (it has been available in
experimental for several months now).

Your package fails to build with it:

  Running Sphinx v1.5.6
  making output directory...

  Exception occurred:
  Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/sphinx/cmdline.py", line 295, in main
  opts.warningiserror, opts.tags, opts.verbosity, opts.jobs)
File "/usr/lib/python3/dist-packages/sphinx/application.py", line 163, in 
__init__
  confoverrides or {}, self.tags)
File "/usr/lib/python3/dist-packages/sphinx/config.py", line 134, in 
__init__
  execfile_(filename, config)
File "/usr/lib/python3/dist-packages/sphinx/util/pycompat.py", line 129, in 
execfile_
  exec_(code, _globals)
File "conf.py", line 15, in 
  ImportError: No module named 'version'

The full build log is attached.

--
Dmitry Shachnev
 dpkg-buildpackage -rfakeroot -us -uc -j4
dpkg-buildpackage: warning: using a gain-root-command while being root
dpkg-buildpackage: info: source package morse-simulator
dpkg-buildpackage: info: source version 1.4-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sylvestre Ledru 

 dpkg-source --before-build morse-simulator-1.4
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean --with python3
dh: Compatibility levels before 9 are deprecated (level 8 in use)
   dh_testdir
   dh_auto_clean
dh_auto_clean: Compatibility levels before 9 are deprecated (level 8 in use)
   dh_clean
dh_clean: Compatibility levels before 9 are deprecated (level 8 in use)
 dpkg-source -b morse-simulator-1.4
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building morse-simulator using existing 
./morse-simulator_1.4.orig.tar.gz
dpkg-source: info: building morse-simulator in 
morse-simulator_1.4-2.debian.tar.xz
dpkg-source: info: building morse-simulator in morse-simulator_1.4-2.dsc
 debian/rules build
dh build --with python3
dh: Compatibility levels before 9 are deprecated (level 8 in use)
   dh_testdir
   dh_update_autotools_config
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/morse-simulator-1.4'
dh_auto_configure -- -DBUILD_DOC_SUPPORT=ON 
-DPYTHON_EXECUTABLE=/usr/bin/python3 \
 -DCPACK_DEBIAN_PACKAGE_DEPENDS=python3-all-dev -DPYMORSE_SUPPORT=ON
dh_auto_configure: Compatibility levels before 9 are deprecated (level 8 in use)
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON 
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc 
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DBUILD_DOC_SUPPORT=ON 
-DPYTHON_EXECUTABLE=/usr/bin/python3 
-DCPACK_DEBIAN_PACKAGE_DEPENDS=python3-all-dev -DPYMORSE_SUPPORT=ON
-- The C compiler identification is GNU 7.1.0
-- The CXX compiler identification is GNU 7.1.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") 
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.5.3", 
required is "3.3") 
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so (found suitable 
exact version "3.5") 
-- will install python files in /usr/lib/python3/dist-packages
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
CPACK_DEBIAN_PACKAGE_DEPENDS


-- Build files have been written to: 

Bug#861028: marked as done (morse-simulator: abuses Conflicts to circument Policy 10.1 on /usr/bin/morse collision with morse)

[Debian Bug Tracking System]

Your message dated Sun, 15 Apr 2018 18:06:25 +
with message-id 
and subject line Bug#861028: fixed in morse-simulator 1.4-3
has caused the Debian Bug report #861028,
regarding morse-simulator: abuses Conflicts to circument Policy 10.1 on 
/usr/bin/morse collision with morse
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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--- Begin Message ---
Package: morse-simulator
Version: 0.5.2-1
Severity: serious

Hi,

both morse and morse-simulator ship /usr/bin/morse

  Package: morse
  Description-en: training program about morse-code for aspiring radio hams

  Package: morse-simulator
  Description-en: Multi-OpenRobot Simulation Engine
  Conflicts: morse

These two packages seem in no way related, so using Conflicts is
incorrect here, hiding a violation of Policy 10.1:

  10.1 Binaries
  Two different packages must not install programs with different
  functionality but with the same filenames.
  [...]
  https://www.debian.org/doc/debian-policy/ch-files.html#s-binaries

Given the long history of this bug (going back to wheezy (at least)),
it's probably OK to ask for {stretch,jessie,wheezy}-ignore.


Andreas

PS: I stomped on this by accident since morse-simulator-doc puts stuff
into /usr/share/doc/morse :-)
--- End Message ---
--- Begin Message ---
Source: morse-simulator
Source-Version: 1.4-3

We believe that the bug you reported is fixed in the latest version of
morse-simulator, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 861...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sylvestre Ledru  (supplier of updated morse-simulator 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 15 Apr 2018 18:40:27 +0200
Source: morse-simulator
Binary: morse-simulator morse-simulator-data morse-simulator-doc 
python3-morse-simulator
Architecture: source
Version: 1.4-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sylvestre Ledru 
Description:
 morse-simulator - Multi-OpenRobot Simulation Engine
 morse-simulator-data - Multi-OpenRobot Simulation Engine
 morse-simulator-doc - Multi-OpenRobot Simulation Engine - Documentation
 python3-morse-simulator - Multi-OpenRobot Simulation Engine
Closes: 853557 861028
Changes:
 morse-simulator (1.4-3) unstable; urgency=medium
 .
   * Fix the FTBFS by adding the version.py file from usptream
 (Closes: #853557)
   * Package moved on salsa
   * Standards-Version updated to 4.1.3
   * Move to compat mode 8
   * Fix priority-extra-is-replaced-by-priority-optional
   * Explicit python3-setuptools as dep
   * Rename morse => morsesim to avoid a conflict
 For now, it still contains a symlink from morse to morseim
 I will remove it later.
 (Closes: #861028)
   * Disable the sphinx ext vimeo & gallery until
 https://github.com/morse-simulator/morse/issues/792 is fixed
 .
   [ Séverin Lemaignan ]
   * Relax the need for Sphinx 1.3 as the original issue (#792711) has been
 fixed upstream
Checksums-Sha1:
 dc2badbb3940f0286b6f38128f0a270ca8db3437 2358 morse-simulator_1.4-3.dsc
 81cf062b768ddff19b21865736123cc83269b7d1 6576 
morse-simulator_1.4-3.debian.tar.xz
 225c1f742c848b88801e46a1f31d21a026b42b8f 9319 
morse-simulator_1.4-3_amd64.buildinfo
Checksums-Sha256:
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morse-simulator_1.4-3.dsc
 e7b725fe9c7c74e7ab152afaea28ea7510e931b28a1ad532d9dfe54477295073 6576 
morse-simulator_1.4-3.debian.tar.xz
 bafc33a39359ade0368a3b867e82bb3a2b387b8c8edf3ce39e696c2eb6282f9b 9319 
morse-simulator_1.4-3_amd64.buildinfo
Files:
 5ce6f6dd8adf78f740c7ac743569ac50 2358 science optional 
morse-simulator_1.4-3.dsc
 9706c779f08e254c7cb1672cb3e0ebcc 6576 science optional 
morse-simulator_1.4-3.debian.tar.xz
 2a8248aea57bcacdeeb2d6e573783c51 9319 science optional 
morse-simulator_1.4-3_amd64.buildinfo

-BEGIN PGP SIGNATURE-

morse-simulator_1.4-3_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 15 Apr 2018 18:40:27 +0200
Source: morse-simulator
Binary: morse-simulator morse-simulator-data morse-simulator-doc 
python3-morse-simulator
Architecture: source
Version: 1.4-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sylvestre Ledru 
Description:
 morse-simulator - Multi-OpenRobot Simulation Engine
 morse-simulator-data - Multi-OpenRobot Simulation Engine
 morse-simulator-doc - Multi-OpenRobot Simulation Engine - Documentation
 python3-morse-simulator - Multi-OpenRobot Simulation Engine
Closes: 853557 861028
Changes:
 morse-simulator (1.4-3) unstable; urgency=medium
 .
   * Fix the FTBFS by adding the version.py file from usptream
 (Closes: #853557)
   * Package moved on salsa
   * Standards-Version updated to 4.1.3
   * Move to compat mode 8
   * Fix priority-extra-is-replaced-by-priority-optional
   * Explicit python3-setuptools as dep
   * Rename morse => morsesim to avoid a conflict
 For now, it still contains a symlink from morse to morseim
 I will remove it later.
 (Closes: #861028)
   * Disable the sphinx ext vimeo & gallery until
 https://github.com/morse-simulator/morse/issues/792 is fixed
 .
   [ Séverin Lemaignan ]
   * Relax the need for Sphinx 1.3 as the original issue (#792711) has been
 fixed upstream
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Bug#890882: workaround for "Freecad fails to start with Assertion `!xcb_xlib_threads_sequence_lost' failed"

[Jonathan]

Hi,

I've found a temporary workaround for this on the Arch User Repository 
page for freecad.


LIBGL_DRI3_DISABLE=true FreeCAD

Maybe I'll save someone the extra searching...

Kind Regards
gbf

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vtk7_7.1.1+dfsg1-3_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA256

Format: 1.8
Date: Sun, 15 Apr 2018 16:37:32 +0200
Source: vtk7
Binary: libvtk7-dev libvtk7-qt-dev libvtk7.1 libvtk7.1-qt libvtk7-jni 
libvtk7-java python3-vtk7 tcl-vtk7 vtk7 vtk7-doc vtk7-examples
Architecture: source
Version: 7.1.1+dfsg1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Gert Wollny 
Description:
 libvtk7-dev - VTK header files
 libvtk7-java - Visualization Toolkit - A high level 3D visualization library - 
j
 libvtk7-jni - Visualization Toolkit - A high level 3D visualization library - j
 libvtk7-qt-dev - VTK header files, containing Qt files
 libvtk7.1  - VTK libraries
 libvtk7.1-qt - VTK libraries, Qt files
 python3-vtk7 - Python bindings for VTK
 tcl-vtk7   - Tcl bindings for VTK
 vtk7   - Binaries for VTK7
 vtk7-doc   - VTK class reference documentation
 vtk7-examples - VTK examples
Changes:
 vtk7 (7.1.1+dfsg1-3) unstable; urgency=medium
 .
   * Update autopkgtst to OpenGL2 interface
   * d/control: Remove Andy from uploaders
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python-bumps_0.7.6-4_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Date: Mon, 16 Apr 2018 00:28:33 +1000
Source: python-bumps
Binary: python-bumps python3-bumps python-bumps-doc
Architecture: source
Version: 0.7.6-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Stuart Prescott 
Description:
 python-bumps - data fitting and Bayesian uncertainty modeling for inverse 
proble
 python-bumps-doc - data fitting and Bayesian uncertainty modeling for inverse 
proble
 python3-bumps - data fitting and Bayesian uncertainty modeling for inverse 
proble
Changes:
 python-bumps (0.7.6-4) unstable; urgency=medium
 .
   * Update to new matplotlib API.
   * Add missing dependencies to packages.
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Bug#895713: FTBFS with googletest 1.8.0-7

[Steve Robbins]

severity 895713 normal
tags 895713 + patch
thanks

On Saturday, April 14, 2018 7:10:33 PM CDT you wrote:

> Debian's googletest package used to ship only sources, not a compiled
> libgtest.  The ros-catkin package has a build-dep on libgtest-dev.

I was mistaken on the second point; ros-catkin does NOT build-depend on 
libgtest-dev.  I got confused while rebuilding it on my development system 
with gtest installed.  This configuration does provoke the errors described.  
At present, however, ros-catkin rebuilds fine on a clean (pbuilder) 
environment.  So I'm downgrading this bug.

If, in future, you decide to enable tests, you will run into this bug.  It 
looks to me like the gtest and gtest_main libraries are already set by
"find_package(GTest QUIET)".  Removing the lines in catkin's gtest.cmake (see 
patch) fixes the build for me.


> Additionally, the flaw in gtest.cmake appears to be the cause of
> ros-rospack build failure tracked in Bug #895708 -- contrary to what
> was previously written in that bug -- as the ros-rospack build fails
> at the same lines in the installed version of gtest.cmake:
> 
> -- Found gtest: gtests will be built
> CMake Error at /usr/share/catkin/cmake/test/gtest.cmake:369
> (add_library): add_library cannot create imported target "gtest" because
> another target with the same name already exists.
> Call Stack (most recent call first):
>   /usr/share/catkin/cmake/all.cmake:147 (include)
>   /usr/share/catkin/cmake/catkinConfig.cmake:20 (include)
>   CMakeLists.txt:4 (find_package)

This is again what I observed on my development system.  When built in a clean 
environment -- e.g. see [1] -- this error does not occur, although #895708 
does.  I'm not sure why.

[1] 
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/ros-rospack.html

-Steve
diff --git a/cmake/test/gtest.cmake b/cmake/test/gtest.cmake
index c12f67f..ace642a 100755
--- a/cmake/test/gtest.cmake
+++ b/cmake/test/gtest.cmake
@@ -366,10 +366,6 @@ if(NOT GMOCK_FOUND)
 endif()
   else()
 message(STATUS "Found gtest: gtests will be built")
-add_library(gtest SHARED IMPORTED)
-set_target_properties(gtest PROPERTIES IMPORTED_LOCATION "${GTEST_LIBRARIES}")
-add_library(gtest_main SHARED IMPORTED)
-set_target_properties(gtest_main PROPERTIES IMPORTED_LOCATION "${GTEST_MAIN_LIBRARIES}")
 set(GTEST_FOUND ${GTEST_FOUND} CACHE INTERNAL "")
 set(GTEST_INCLUDE_DIRS ${GTEST_INCLUDE_DIRS} CACHE INTERNAL "")
 set(GTEST_LIBRARIES ${GTEST_LIBRARIES} CACHE INTERNAL "")


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Bug#895748: mpi-default-dev: add riscv64 to list of MPI arches

[Drew Parsons]

Package: mpi-default-dev
Version: 1.10
Severity: normal

Both openmpi and mpich now build on the new arch riscv64.
So riscv64 should be added to the list of default arches.

Whether default to openmpi or to mpich, your choice.
We've been defaulting to openmpi for most arches, but that's mainly
because historically mpich supported a smaller set of arches than Debian
supports.

Now that mpich builds on all arches, it could be a good opportunity to 
review and discuss whether we want to keep openmpi as the default
default, or whether we want to switch to mpich.

Again historically, openmpi had more bugs than mpich, mainly because it
was trying to do more things (support more arches, for instance).

We seem to have convergence at this point in time.  OpenMPI has now 
fixed the old egregious bugs, while mpich now supports many arches.

So you could say it doesn't really matter which one we one we choose,
except perhaps for particular specific HPC configurations, where one
implementation may have advantage over the other.  But Debian can't
optimise for that, unless a survey can get back to us on which one
better suits our actual HPC clients.

Maybe we could swap the default MPI from release to release, to keep 
them both lively.

Drew

-- System Information:
Debian Release: buster/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.15.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages mpi-default-dev depends on:
ii  libopenmpi-dev  2.1.1-8

mpi-default-dev recommends no packages.

mpi-default-dev suggests no packages.

-- no debconf information

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Processed: Re: FTBFS with googletest 1.8.0-7

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> severity 895713 normal
Bug #895713 [src:ros-catkin] FTBFS with googletest 1.8.0-7
Severity set to 'normal' from 'serious'
> tags 895713 + patch
Bug #895713 [src:ros-catkin] FTBFS with googletest 1.8.0-7
Added tag(s) patch.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
895713: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895713
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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vtk7_7.1.1+dfsg1-3_source.changes uploaded successfully to localhost
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python-bumps_0.7.6-4_source.changes uploaded successfully to localhost
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Re: Donation

[M. M. Fridman]

I Mikhail Fridman. has selected you specially as one of my beneficiaries
for my Charitable Donation, Just as I have declared on May 23, 2016 to give
my fortune as charity.

Check the link below for confirmation:

http://www.ibtimes.co.uk/russias-second-wealthiest-man-mikhail-fridman-plans-leaving-14-2bn-fortune-charity-1561604

Reply as soon as possible with further directives.

Best Regards,
Mikhail Fridman.

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datamash_1.3-1_amd64.changes ACCEPTED into unstable

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Accepted:

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Format: 1.8
Date: Sun, 15 Apr 2018 11:09:19 +0100
Source: datamash
Binary: datamash
Architecture: source amd64
Version: 1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Alejandro Garrido Mota 
Description:
 datamash   - statistics tool for command-line interface
Changes:
 datamash (1.3-1) unstable; urgency=medium
 .
   * New upstream release.
   * d/watch: Updated to the 4.0 and replaced the URL with httpS.
   * d/copyright: Updated dates and changed all URIs to HTTPs
   * d/compat: Updated debhelper to version 10
   * d/rules: Removed autotools-dev for debhelper
   * d/tests/*: Added Autopkgtest test suite with a simple smoketest
   * d/control:
 - Replaced priority field with 'Optional' (extra is deprecated)
 - Updated Standards-Version field
 - Updated Maintainers and Uploaders field (moving to Debian Science Team)
 - Updated Vcs-Browser and Vcs-Git fields with the salsa (gitlab) URL
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Thank you for your contribution to Debian.

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Processing of datamash_1.3-1_amd64.changes

[Debian FTP Masters]

datamash_1.3-1_amd64.changes uploaded successfully to localhost
along with the files:
  datamash_1.3-1.dsc
  datamash_1.3.orig.tar.gz
  datamash_1.3.orig.tar.gz.asc
  datamash_1.3-1.debian.tar.xz
  datamash-dbgsym_1.3-1_amd64.deb
  datamash_1.3-1_amd64.buildinfo
  datamash_1.3-1_amd64.deb

Greetings,

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Bug#808455: roboptim-core: FTBFS: dh_install: libroboptim-core2-plugin-base missing files (usr/lib/*/roboptim-core/*.so.2*), aborting

[Chris Lamb]

Hi,

> roboptim-core: FTBFS: dh_install: [...]

So:

 https://bugs.debian.org/cgi-bin/pkgreport.cgi?src=roboptim-core

5 RC bugs? Are we sure this should be in Debian? :-)


Regards,

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Processed: Move to source package and clean affects

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> reassign 895707 src:gumbo-parser 0.10.1+dfsg-2.1
Bug #895707 [gumbo-parser] use gtest sources or use -pthread with system 
libgtest
Bug reassigned from package 'gumbo-parser' to 'src:gumbo-parser'.
Ignoring request to alter found versions of bug #895707 to the same values 
previously set
Ignoring request to alter fixed versions of bug #895707 to the same values 
previously set
Bug #895707 [src:gumbo-parser] use gtest sources or use -pthread with system 
libgtest
Marked as found in versions gumbo-parser/0.10.1+dfsg-2.1.
> tags 895707 buster sid
Bug #895707 [src:gumbo-parser] use gtest sources or use -pthread with system 
libgtest
Added tag(s) buster and sid.
> affects 895707 =
Bug #895707 [src:gumbo-parser] use gtest sources or use -pthread with system 
libgtest
Removed indication that 895707 affects src:libqtdbustest, src:rapidjson, 
src:colobot, src:kodi, src:libqtdbusmock, src:gumbo-parser, src:arrayfire, 
src:properties-cpp, src:davix, src:gfal2, src:ros-rospack, and src:opensurgsim
> reassign 895708 src:ros-rospack 2.5.0-1
Bug #895708 [ros-rospack] use gtest sources or use -pthread with system libgtest
Bug reassigned from package 'ros-rospack' to 'src:ros-rospack'.
Ignoring request to alter found versions of bug #895708 to the same values 
previously set
Ignoring request to alter fixed versions of bug #895708 to the same values 
previously set
Bug #895708 [src:ros-rospack] use gtest sources or use -pthread with system 
libgtest
Marked as found in versions ros-rospack/2.5.0-1.
> affects 895708 =
Bug #895708 [src:ros-rospack] use gtest sources or use -pthread with system 
libgtest
Removed indication that 895708 affects src:arrayfire, src:davix, 
src:properties-cpp, src:gumbo-parser, src:libqtdbusmock, src:opensurgsim, 
src:ros-rospack, src:gfal2, src:rapidjson, src:kodi, src:colobot, and 
src:libqtdbustest
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
895707: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895707
895708: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895708
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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r-cran-lubridate_1.7.4-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA256

Format: 1.8
Date: Sun, 15 Apr 2018 08:37:02 +0200
Source: r-cran-lubridate
Binary: r-cran-lubridate
Architecture: source
Version: 1.7.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Andreas Tille 
Description:
 r-cran-lubridate - simplifies dealing with dates in R
Changes:
 r-cran-lubridate (1.7.4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.1.4
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Processing of r-cran-lubridate_1.7.4-1_source.changes

[Debian FTP Masters]

r-cran-lubridate_1.7.4-1_source.changes uploaded successfully to localhost
along with the files:
  r-cran-lubridate_1.7.4-1.dsc
  r-cran-lubridate_1.7.4.orig.tar.gz
  r-cran-lubridate_1.7.4-1.debian.tar.xz

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