taurus is marked for autoremoval from testing

[Debian testing autoremoval watch]

taurus 3.7.0+dfsg-2 is marked for autoremoval from testing on 2016-04-25

It (build-)depends on packages with these RC bugs:
784613: spyder: [spyder] Qt4's WebKit removal


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freemat_4.2+dfsg1-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Tue, 05 Apr 2016 22:55:56 +0200
Source: freemat
Binary: freemat freemat-data freemat-help
Architecture: source
Version: 4.2+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Anton Gladky 
Description:
 freemat- mathematics framework (mostly matlab compatible)
 freemat-data - freemat data files
 freemat-help - freemat help files
Changes:
 freemat (4.2+dfsg1-1) unstable; urgency=medium
 .
   * Move from experimental to unstable.
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Processing of freemat_4.2+dfsg1-1_source.changes

[Debian FTP Masters]

freemat_4.2+dfsg1-1_source.changes uploaded successfully to localhost
along with the files:
  freemat_4.2+dfsg1-1.dsc
  freemat_4.2+dfsg1-1.debian.tar.xz

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Processing of freemat_4.2+dfsg1-1_source.changes

[Debian FTP Masters]

freemat_4.2+dfsg1-1_source.changes uploaded successfully to 
ftp-master.debian.org
along with the files:
  freemat_4.2+dfsg1-1.dsc
  freemat_4.2+dfsg1-1.debian.tar.xz

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Processed: block 820098 with 820113

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 820098 with 820113
Bug #820098 [src:pcl] FTBFS: No rule to make target 
'/usr/lib/x86_64-linux-gnu/hdf5/openmpi/lib/libhdf5.so'
820098 was not blocked by any bugs.
820098 was not blocking any bugs.
Added blocking bug(s) of 820098: 820113
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#669248: marked as done (paraview: splash screen stays when "Open File" dialog is opened too early)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 22:03:27 +0200
with message-id 

and subject line Closing the bug
has caused the Debian Bug report #669248,
regarding paraview: splash screen stays when "Open File" dialog is opened too 
early
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
669248: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=669248
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: paraview
Version: 3.14.1-1
Severity: minor

The splash screen stays when pressing Ctrl-O to open files before the splash
screen disappears.  The splash screen then stays in front of the open file
dialog which is a bit annoying.  It only disappears once the "Open File" dialog
is closed again.

Regards,
Ansgar

-- System Information:
Debian Release: wheezy/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.0.0-17-generic (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages paraview depends on:
ii  libavcodec53  5:0.8.1-4
ii  libavformat53 5:0.8.1-4
ii  libavutil51   5:0.8.1-4
ii  libc6 2.13-27
ii  libexpat1 2.1.0-1
ii  libfreetype6  2.4.9-1
ii  libgcc1   1:4.7.0-3
ii  libgl1-mesa-glx [libgl1]  7.11.2-1
ii  libglu1-mesa [libglu1]7.11.2-1
ii  libhdf5-7 [libhdf5-7] 1.8.8-9
ii  libice6   2:1.0.8-2
ii  libjpeg8  8d-1
ii  libmysqlclient16  5.1.61-3
ii  libogg0   1.2.2~dfsg-1
ii  libopenmpi1.3 1.4.3-2.1
ii  libpng12-01.2.49-1
ii  libpq59.1.3-2
ii  libpython2.7  2.7.3~rc2-2
ii  libqt4-help   4:4.7.4-3
ii  libqt4-network4:4.7.4-3
ii  libqt4-sql4:4.7.4-3
ii  libqt4-xml4:4.7.4-3
ii  libqt4-xmlpatterns4:4.7.4-3
ii  libqtcore44:4.7.4-3
ii  libqtgui4 4:4.7.4-3
ii  libqtwebkit4  2.2.0-5
ii  libsm62:1.2.1-2
ii  libsqlite3-0  3.7.11-2
ii  libstdc++64.7.0-3
ii  libswscale2   5:0.8.1-4
ii  libtheora01.1.1+dfsg.1-3
ii  libtiff4  3.9.6-2
ii  libx11-6  2:1.4.4-4
ii  libxext6  2:1.3.1-1
ii  libxml2   2.7.8.dfsg-8
ii  libxt61:1.1.1-2
ii  qt4-dev-tools 4:4.7.4-3
ii  tcl8.5 [tclsh]8.5.11-1
ii  zlib1g1:1.2.6.dfsg-2

Versions of packages paraview recommends:
ii  mpi-default-bin  1.0.1
ii  paraview-doc 
ii  paraview-python  3.14.1-1

Versions of packages paraview suggests:
pn  h5utils 
pn  hdf5-tools  

-- no debconf information


--- End Message ---
--- Begin Message ---
fixed 669248 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards

Anton--- End Message ---
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Bug#670135: marked as done (paraview: file dialog aborts if current working directory is removed)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 22:02:11 +0200
with message-id 

and subject line Closing the bug
has caused the Debian Bug report #670135,
regarding paraview: file dialog aborts if current working directory is removed
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
670135: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=670135
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: paraview
Version: 3.14.1-1
Severity: normal
Tags: upstream

Opening the file dialog (Ctrl-o) will abort paraview if the current working
directory is removed:

  $ mkdir /tmp/asd; cd /tmp/asd; paraview&
  # wait for paraview to start
  $ rmdir /tmp/asd
  # open file dialog with Ctrl-o in paraview
  No current working directory
  [1]  + abort  paraview

Regards,
Ansgar

-- System Information:
Debian Release: wheezy/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.0.0-17-generic (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages paraview depends on:
ii  libavcodec53  5:0.8.1-4
ii  libavformat53 5:0.8.1-4
ii  libavutil51   5:0.8.1-4
ii  libc6 2.13-30
ii  libexpat1 2.1.0-1
ii  libfreetype6  2.4.9-1
ii  libgcc1   1:4.7.0-3
ii  libgl1-mesa-glx [libgl1]  7.11.2-1
ii  libglu1-mesa [libglu1]7.11.2-1
ii  libhdf5-7 [libhdf5-7] 1.8.8-9
ii  libice6   2:1.0.8-2
ii  libjpeg8  8d-1
ii  libmysqlclient16  5.1.61-3
ii  libogg0   1.2.2~dfsg-1
ii  libopenmpi1.3 1.4.3-2.1
ii  libpng12-01.2.49-1
ii  libpq59.1.3-2
ii  libpython2.7  2.7.3~rc2-2
ii  libqt4-help   4:4.7.4-3
ii  libqt4-network4:4.7.4-3
ii  libqt4-sql4:4.7.4-3
ii  libqt4-xml4:4.7.4-3
ii  libqt4-xmlpatterns4:4.7.4-3
ii  libqtcore44:4.7.4-3
ii  libqtgui4 4:4.7.4-3
ii  libqtwebkit4  2.2.0-5
ii  libsm62:1.2.1-2
ii  libsqlite3-0  3.7.11-2
ii  libstdc++64.7.0-3
ii  libswscale2   5:0.8.1-4
ii  libtheora01.1.1+dfsg.1-3
ii  libtiff4  3.9.6-3
ii  libx11-6  2:1.4.99.901-1
ii  libxext6  2:1.3.1-2
ii  libxml2   2.7.8.dfsg-8
ii  libxt61:1.1.1-2
ii  qt4-dev-tools 4:4.7.4-3
ii  tcl8.5 [tclsh]8.5.11-1
ii  zlib1g1:1.2.6.dfsg-2

Versions of packages paraview recommends:
ii  mpi-default-bin  1.0.1
ii  paraview-doc 
ii  paraview-python  3.14.1-1

Versions of packages paraview suggests:
pn  h5utils 
pn  hdf5-tools  

-- no debconf information


--- End Message ---
--- Begin Message ---
fixed 670135 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards

Anton--- End Message ---
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Bug#669248: Closing the bug

[Anton Gladky]

fixed 669248 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards

Anton

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Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 670135 5.0.0+dfsg1-2
Bug #670135 [paraview] paraview: file dialog aborts if current working 
directory is removed
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
670135: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=670135
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 669248 5.0.0+dfsg1-2
Bug #669248 [paraview] paraview: splash screen stays when "Open File" dialog is 
opened too early
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Bug#670135: Closing the bug

[Anton Gladky]

fixed 670135 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards

Anton

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Bug#669247: marked as done (paraview-python: segfaults on exit)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 22:00:31 +0200
with message-id 

Bug#669247: Closing the bug

[Anton Gladky]

fixed 669247 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards

Anton

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Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 669247 5.0.0+dfsg1-2
Bug #669247 [paraview-python] paraview-python: segfaults on exit
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Bug#784841: marked as done (paraview-python: cannot be installed side by side with mayavi2)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 21:56:47 +0200
with message-id 

and subject line Closing the bug
has caused the Debian Bug report #784841,
regarding paraview-python: cannot be installed side by side with mayavi2
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
784841: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=784841
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: paraview-python
Version: 4.1.0+dfsg+1-1
Severity: normal

Hello and thanks for maintaining ParaView in Debian!

It seems to me that it's not possible to install paraview-python
on boxes where mayavi2 is already present:

  $ aptitude -s install paraview-python 
  The following NEW packages will be installed:
fonts-lyx{a} libarmadillo4{a} libarpack2{a} libdap11{a} libdapclient3{a} 
libdapserver7{a} libepsilon1{a} libfreexl1{a} libgdal1h{a} 
libgeos-3.4.2{a} libgeos-c1{a} libhdf4-0-alt{a} libjsoncpp0{a} libkml0{a} 
libodbc1{a} libogdi3.2{a} libproj0{a} libqt5opengl5{a} libqt5webkit5{a} 
libspatialite5{a} liburiparser1{a} libvtk6.1{a} libxdmf2{a} 
libxerces-c3.1{a} mpi-default-bin{a} odbcinst{a} odbcinst1debian2{a} 
openmpi-bin{a} openmpi-common{a} paraview{a} paraview-doc{a} 
paraview-python proj-bin{a} proj-data{a} python-dateutil{a} 
python-glade2{a} python-matplotlib{a} python-matplotlib-data{a} 
python-mock{a} python-nose{a} python-pyparsing{a} python-tz{a} 
python-vtk6{ab} tcl-vtk6{a} 
  0 packages upgraded, 44 newly installed, 0 to remove and 3 not upgraded.
  Need to get 112 MB of archives. After unpacking 455 MB will be used.
  The following packages have unmet dependencies:
   python-vtk6 : Conflicts: python-vtk but 5.8.0-17.5 is installed.
  The following actions will resolve these dependencies:
  
   Remove the following packages:
  1) mayavi2 
  2) python-vtk  
  
  
  
  Accept this solution? [Y/n/q/?]


It would be nice if this conflict could solved for the best,
so that one could have mayavi2 and paraview-python on the same
box.

Thanks for considering.
Bye.
--- End Message ---
--- Begin Message ---
fixed 784841 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards,

Anton--- End Message ---
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Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 784841 5.0.0+dfsg1-2
Bug #784841 [paraview-python] paraview-python: cannot be installed side by side 
with mayavi2
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#784841: Closing the bug

[Anton Gladky]

fixed 784841 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards,

Anton

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Bug#671229: Closing the bug

[Anton Gladky]

fixed 671229 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards,

Anton

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Bug#779862: Closing the bug

[Anton Gladky]

fixed 779862 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards,

Anton

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Bug#779862: marked as done (newer (4.3.1) upstream version available)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 21:54:29 +0200
with message-id 

Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 779862 5.0.0+dfsg1-2
Bug #779862 [paraview] newer (4.3.1) upstream version available
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

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Bug#671229: marked as done (using "Edit Color Map..." on a Slice causes paraview to hang)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 21:50:14 +0200
with message-id 

Bug#706084: marked as done (paraview: pvbatch --version hangs)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 21:51:53 +0200
with message-id 

Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 706084 5.0.0+dfsg1-2
Bug #706084 [paraview] paraview: pvbatch --version hangs
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

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Processed: Closing the bug

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> fixed 671229 5.0.0+dfsg1-2
Bug #671229 [paraview] using "Edit Color Map..." on a Slice causes paraview to 
hang
Marked as fixed in versions paraview/5.0.0+dfsg1-2.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#706084: Closing the bug

[Anton Gladky]

fixed 706084 5.0.0+dfsg1-2
thanks

Hi,

it seems the bug is not relevant any more.
That is why I'm closing the bug. Please, feel
free to reopen it if you think the bug is still there, or
fill a new bug.

Kind regards,

Anton

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Advertencia buzón ha superado el límite de cuota

[Administrador de sistema]

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acceso limitado a su buzón de correo y la falta de actualización de su cuenta 
dentro de las 48 horas, de esta notificación de actualización, su cuenta será 
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r-cran-uuid 0.1.2-6 MIGRATED to testing

[Debian testing watch]

FYI: The status of the r-cran-uuid source package
in Debian's testing distribution has changed.

  Previous version: 0.1.2-5
  Current version:  0.1.2-6

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chealpix REMOVED from testing

[Debian testing watch]

FYI: The status of the chealpix source package
in Debian's testing distribution has changed.

  Previous version: 3.11.4-2
  Current version:  (not in testing)
  Hint: 
Bug #816719: chealpix: FTBFS on mips: timed out

The script that generates this mail tries to extract removal
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clfft 2.10.2-1 MIGRATED to testing

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in Debian's testing distribution has changed.

  Previous version: 2.10.1-1
  Current version:  2.10.2-1

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Advertencia buzón ha superado el límite de cuota

[Administrador de sistema]

Querido usuario,
Su buzn ha superado el lmite de la cuota establecida por el 
administrador, usted no ser capaz de enviar o recibir correo hasta que 
vuelve a validar su cuenta.
Por favor, haga clic en el siguiente enlace o copiar y pegar en tu navegador 
para validar su buzn de correo.
http://www.jiffy1.com/cuota-servicio
De no hacerlo, dar lugar a un acceso limitado a su buzn de 
correo y la falta de actualizacin de su cuenta dentro de las 48 horas, 
de esta notificacin de actualizacin, su cuenta ser 
cerrada permanentemente.
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Bug#820113: No rule to make target '/usr/lib/x86_64-linux-gnu/hdf5/openmpi/lib/libhdf5.so'

[Jochen Sprickerhof]

Package: libvtk6-dev
Version: 6.2.0+dfsg1-11
Severity: normal

Dear Maintainer,

the latest vtk6 needs a dependency on libhdf5-openmpi-dev, I guess it's because
of the enabling the parallel version in a108eef. Test case is again:

http://pointclouds.org/documentation/tutorials/reading_pcd.php

Cheers Jochen


-- System Information:
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  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.4.0-1-amd64 (SMP w/12 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: sysvinit (via /sbin/init)

Versions of packages libvtk6-dev depends on:
ii  libavcodec-dev 7:2.8.6-1+b2
ii  libavformat-dev7:2.8.6-1+b2
ii  libavutil-dev  7:2.8.6-1+b2
ii  libc6-dev  2.22-5
ii  libeigen3-dev  3.3~beta1-2
ii  libexpat1-dev [libexpat-dev]   2.1.1-1
ii  libfreetype6-dev   2.6.3-3
ii  libgdal-dev2.0.2+dfsg-5
ii  libgl1-mesa-dev [libgl-dev]11.1.2-1
ii  libgl2ps-dev   1.3.8-1.2
ii  libglu1-mesa-dev [libglu-dev]  9.0.0-2.1
ii  libjpeg-dev1:1.4.2-2
ii  libjpeg62-turbo-dev [libjpeg-dev]  1:1.4.2-2
ii  libjsoncpp-dev 1.7.2-1
ii  libmysqlclient-dev 5.6.28-1
ii  libnetcdf-cxx-legacy-dev   4.2-6
ii  libnetcdf-dev  1:4.4.0-2
ii  libogg-dev 1.3.2-1
ii  libpng12-dev [libpng-dev]  1.2.54-4
ii  libpq-dev  9.5.2-1
ii  libpython-dev  2.7.11-1
ii  libswscale-dev 7:2.8.6-1+b2
ii  libtheora-dev  1.1.1+dfsg.1-8
ii  libtiff5-dev [libtiff-dev] 4.0.6-1
ii  libvtk6-java   6.2.0+dfsg1-11
ii  libvtk6.2  6.2.0+dfsg1-11
ii  libx11-dev 2:1.6.3-1
ii  libxft-dev 2.3.2-1
ii  libxml2-dev2.9.3+dfsg1-1
ii  libxss-dev 1:1.2.2-1
ii  libxt-dev  1:1.1.5-1
ii  mpi-default-dev1.4
ii  python-vtk66.2.0+dfsg1-11
ii  python-zope.interface  4.1.3-1+b1
ii  tcl-dev8.6.0+9
ii  tcl-vtk6   6.2.0+dfsg1-11
ii  tk-dev 8.6.0+9
ii  vtk6   6.2.0+dfsg1-11
ii  x11proto-core-dev  7.0.28-2
ii  zlib1g-dev 1:1.2.8.dfsg-2+b1

libvtk6-dev recommends no packages.

Versions of packages libvtk6-dev suggests:
pn  vtk6-doc   
pn  vtk6-examples  

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Bug#806381: marked as done (opengm: FTBFS on non-Linux: 'sysinfo memInfo' incomplete)

[Debian Bug Tracking System]

Your message dated Tue, 5 Apr 2016 15:34:55 +0100
with message-id <5703cd0f.6080...@gmail.com>
and subject line fixed in opengm/2.3.6+20160131-2
has caused the Debian Bug report #806381,
regarding opengm: FTBFS on non-Linux: 'sysinfo memInfo' incomplete
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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--- Begin Message ---
Source: opengm
Version: 2.3.6-1
Severity: important
Justification: fails to build from source

Builds of opengm for kFreeBSD failed:

  /«PKGBUILDDIR»/include/opengm/utilities/meminfo.hxx: In static member 
function 'static double sys::MemoryInfo::usedSystemMem()':
  /«PKGBUILDDIR»/include/opengm/utilities/meminfo.hxx:135:22: error: aggregate 
'sys::MemoryInfo::usedSystemMem()::sysinfo memInfo' has incomplete type and 
cannot be defined
 struct sysinfo memInfo;

The Hurd autobuilders haven't gotten to opengm yet, but it looks like
they'll encounter the same error when they do.

Could you please take a look?  From a quick glance at the relevant
header, I believe simply adding

  && defined(__linux__)

to line 46 of meminfo.hxx should address the error.

Thanks!
--- End Message ---
--- Begin Message ---

Version: 2.3.6+20160131-2

Fixed by cherry-picking an upstream fix to the patch-queue.

Ghis--- End Message ---
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Bug#820080: libpetsc{-, complex-}3.6.3-dev: leaves alternatives after purge: /etc/alternatives/libpetsc_{real, complex}.so

[Drew Parsons]

You're quick :)

Thanks for the tips.  I'm intending to remove the links in /usr/lib,
converting alternative petsc.so to petsc.so.multiarch (i.e. use only
pure multiarch links with no legacy links.)  Hopefully your discussions
can help sort that out.

Drew

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Bug#816101: marked as done (FTBFS on mipsel - broken openmpi breaks petsc build)

[Debian Bug Tracking System]

Your message dated Tue, 05 Apr 2016 19:13:21 +0800
with message-id <1459854801.11409.22.ca...@debian.org>
and subject line Re: Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks 
petsc build
has caused the Debian Bug report #816101,
regarding FTBFS on mipsel - broken openmpi breaks petsc build
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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--- Begin Message ---
Source: petsc
Version: 3.6.2.dfsg1-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

petsc FTBFS on mipsel:

https://buildd.debian.org/status/fetch.php?pkg=petsc=mipsel=3.6.2.dfsg1-3%2Bb3=1455322055

dh_auto_test -plibpetsc3.6.2-dbg -- \
  PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug \
  LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make -j1 test PETSC_DIR=/«PKGBUILDDIR» 
PETSC_ARCH=mipsel-linux-gnu-real-debug 
LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make[2]: Entering directory '/«PKGBUILDDIR»'
Running test examples to verify correct installation
Using PETSC_DIR=/«PKGBUILDDIR» and PETSC_ARCH=mipsel-linux-gnu-real-debug

r detected during compile or link!***
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/«PKGBUILDDIR»/src/snes/examples/tutorials ex19
cxx
 -o ex19.o -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security  
 -fPIC  -Wdate-time -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/include 
-I/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/include -I/usr/include/suitesparse 
-I/usr/include/superlu -I/usr/include -I/usr/include/scotch 
-I/usr/lib/openmpi/include 
-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent 
-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include 
-I/usr/lib/openmpi/include/openmpi  -Wdate-time -D_FORTIFY_SOURCE=2  
`pwd`/ex19.c
mpicxx -Wl,-z,relro -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat 
-Werror=format-security   -o ex19  ex19.o 
-L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib 
-L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib  -lpetsc_real -ldmumps 
-lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lumfpack -lamd -lcholmod 
-lklu -lsuperlu -lscalapack-openmpi -L/usr/lib -lHYPRE_utilities 
-lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls 
-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -llapack -lblas -lptesmumps -lptscotch 
-lptscotcherr -lfftw3 -lfftw3_mpi -lhwloc -lssl -lcrypto -lm 
-L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 
-L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -lmpi_usempif08 
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lmpi_cxx 
-lstdc++ -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 
-L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -L/usr/lib/mipsel-linux-gnu 
-ldl -L/usr/lib/openmpi/lib -lmpi -lgcc_s -lpthread -ldl 
/bin/rm -f ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
--
A deprecated MCA variable value was specified in the environment or
on the command line.  Deprecated MCA variables should be avoided;
they may disappear in future releases.

  Deprecated variable: orte_rsh_agent
  New variable:plm_rsh_agent
--
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
Number of SNES iterations = 2
make[2]: *** wait: No child processes.  Stop.
make[2]: *** Waiting for unfinished jobs
make[2]: *** wait: No child processes.  Stop.
debian/rules:181: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Terminated
E: Caught signal ‘Terminated’: terminating immediately
debian/rules:106: recipe for target 'build-arch' failed
make: *** [build-arch] Terminated
Build killed with signal TERM after 150 minutes of inactivity
*
--- End Message ---
--- Begin Message ---
affects 818909 src:petsc
thanks

"affects" is more correct than "blocks"
i.e. the bug is in openmpi not petsc--- End Message ---
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r-cran-r6_2.1.2-2~bpo8+1_amd64.changes ACCEPTED into jessie-backports, jessie-backports

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 03 Apr 2016 08:47:14 +0200
Source: r-cran-r6
Binary: r-cran-r6
Architecture: source all
Version: 2.1.2-2~bpo8+1
Distribution: jessie-backports
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Andreas Tille 
Description:
 r-cran-r6  - R classes with reference semantics
Changes:
 r-cran-r6 (2.1.2-2~bpo8+1) jessie-backports; urgency=medium
 .
   * Rebuild for jessie-backports.
Checksums-Sha1:
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 7116becabc669223ca0ad7924650cfae4183a435 2416 
r-cran-r6_2.1.2-2~bpo8+1.debian.tar.xz
 901888eb407dcc164b576767cb98f1eb49509ad0 227166 
r-cran-r6_2.1.2-2~bpo8+1_all.deb
Checksums-Sha256:
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r-cran-r6_2.1.2-2~bpo8+1.dsc
 ea28245e99d11a286ea042a3cc890a868c57564ca29790427accd9c71cf68ff6 2416 
r-cran-r6_2.1.2-2~bpo8+1.debian.tar.xz
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r-cran-r6_2.1.2-2~bpo8+1_all.deb
Files:
 9c24e7b34af33adc6bb66faeb01d917d 2041 gnu-r optional 
r-cran-r6_2.1.2-2~bpo8+1.dsc
 5f3400eeecd23c9b6cddcdf7c9bd2bd3 2416 gnu-r optional 
r-cran-r6_2.1.2-2~bpo8+1.debian.tar.xz
 33aa4e6889e3748cafaf90e5ebc904b0 227166 gnu-r optional 
r-cran-r6_2.1.2-2~bpo8+1_all.deb

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gC1LrBlpsEDmQ4Kavz2Y
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-END PGP SIGNATURE-


Thank you for your contribution to Debian.

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Processed: Re: Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks petsc build

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 816101 by 818909
Bug #816101 [src:petsc] petsc: FTBFS on mipsel - timeout while running the test 
suite
816101 was not blocked by any bugs.
816101 was not blocking any bugs.
Added blocking bug(s) of 816101: 818909
> severity 816101 important
Bug #816101 [src:petsc] petsc: FTBFS on mipsel - timeout while running the test 
suite
Severity set to 'important' from 'serious'
> retitle 816101 FTBFS on mipsel - broken openmpi breaks petsc build
Bug #816101 [src:petsc] petsc: FTBFS on mipsel - timeout while running the test 
suite
Changed Bug title to 'FTBFS on mipsel - broken openmpi breaks petsc build' from 
'petsc: FTBFS on mipsel - timeout while running the test suite'.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks petsc build

[Drew Parsons]

block 816101 by 818909
severity 816101 important
retitle 816101 FTBFS on mipsel - broken openmpi breaks petsc build
thanks

openmpi on mips seems to be in a sorry state at the moment.

Indeed, even though the petsc builds halts on the fortran test, there
is an mpicc segfault earlier in the log at "TESTING: checkCCompiler":


TEST checkCCompiler from 
config.setCompilers(/«PKGBUILDDIR»/config/BuildSystem/config/setCompilers.py:538)
TESTING: checkCCompiler from 
config.setCompilers(/«PKGBUILDDIR»/config/BuildSystem/config/setCompilers.py:538)
  Locate a functional C compiler
Checking for program /usr/local/sbin/mpicc...not found
Checking for program /usr/local/bin/mpicc...not found
Checking for program /usr/sbin/mpicc...not found
Checking for program /usr/bin/mpicc...found
Defined make macro "CC" to "mpicc"
Pushing language C
  All intermediate test results are stored in 
/tmp/petsc-QnNaJd/config.setCompilers
Executing: mpicc -c -o /tmp/petsc-QnNaJd/config.setCompilers/conftest.o 
-I/tmp/petsc-QnNaJd/config.setCompilers -g -O2 -fstack-protector-strong 
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 
/tmp/petsc-QnNaJd/config.setCompilers/conftest.c 
Possible ERROR while running compiler: exit code 35584
stderr:
[mipsel-manda-02:10115] *** Process received signal ***
[mipsel-manda-02:10115] Signal: Segmentation fault (11)
[mipsel-manda-02:10115] Signal code: Address not mapped (1)
[mipsel-manda-02:10115] Failing at address: 0x1aadf988
[mipsel-manda-02:10115] *** End of error message ***
Segmentation fault

I'm downgrading this bug to "Important" since it will clear as soon as
Bug#818909 is fixed (i.e. the bug is in openmpi, not in petsc).

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r-cran-sp_1.2-2-1~bpo8+1_amd64.changes is NEW

[Debian FTP Masters]

binary:r-cran-sp is NEW.
source:r-cran-sp is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html

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Bug#820080: libpetsc{-, complex-}3.6.3-dev: leaves alternatives after purge: /etc/alternatives/libpetsc_{real, complex}.so

[Andreas Beckmann]

Package: libpetsc-complex-3.6.3-dev,libpetsc3.6.3-dev
Version: 3.6.3.dfsg2-1
Severity: important
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package left unowned files on
the system after purge, which is a violation of policy 6.8:

https://www.debian.org/doc/debian-policy/ch-maintainerscripts.html#s-removedetails

The leftover files are actually alternatives that were installed by the
package but have not been properly removed.

While there is ongoing discussion how to remove alternatives correctly
(see https://bugs.debian.org/71621 for details) the following strategy
should work for regular cases:
* 'postinst configure' always installs the alternative
* 'prerm remove' removes the alternative
* 'postrm remove' and 'postrm disappear' remove the alternative
In all other cases a maintainer script is invoked (e.g. upgrade,
deconfigure) the alternatives are not modified to preserve user
configuration.
Removing the alternative in 'prerm remove' avoids having a dangling link
once the actual file gets removed, but 'prerm remove' is not called in
all cases (e.g. unpacked but not configured packages or disappearing
packages) so the postrm must remove the alternative again
(update-alternatives gracefully handles removal of non-existing
alternatives).

Note that the arguments for adding and removing alternatives differ, for
removal it's 'update-alternatives --remove  '.

Filing this as important as having a piuparts clean archive is a release
goal since lenny.

>From the attached log (scroll to the bottom...):

1m25.9s ERROR: FAIL: Package purging left files on system:
  /etc/alternatives/libpetsc_complex.so -> 
/usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.6.3   not owned
  /usr/lib/x86_64-linux-gnu/libpetsc_complex.so -> 
/etc/alternatives/libpetsc_complex.so not owned

1m39.6s ERROR: FAIL: Package purging left files on system:
  /etc/alternatives/libpetsc_real.so -> 
/usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.6.3 not owned
  /usr/lib/x86_64-linux-gnu/libpetsc_real.so -> 
/etc/alternatives/libpetsc_real.so   not owned


cheers,

Andreas


libpetsc-complex-3.6.3-dev_3.6.3.dfsg2-1.log.gz
Description: application/gzip
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Processing of r-cran-sp_1.2-2-1~bpo8+1_amd64.changes

[Debian FTP Masters]

r-cran-sp_1.2-2-1~bpo8+1_amd64.changes uploaded successfully to localhost
along with the files:
  r-cran-sp_1.2-2-1~bpo8+1.dsc
  r-cran-sp_1.2-2-1~bpo8+1.debian.tar.xz
  r-cran-sp_1.2-2-1~bpo8+1_amd64.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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Processed: closing 819608

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> close 819608
Bug #819608 [src:pcl] FTFBS: No rule to make target 
'/usr/lib/x86_64-linux-gnu/libproj.so'
Marked Bug as done
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Prenez soin des neurones de votre coeur et de votre intestin

[Professeur Joyeux]

Prenez soin des neurones de votre coeur et de votre intestin .titre_1_h2_33dff {
color: #0033a5 !important;
}

.titre_2_h3_6df16 {
color: #0033a5 !important;
}

 
http://clic2.sante-nature-innovation.fr/t/EQ/AAFL_Q/AAFYZQ/ADsxwQ/AAPJEQ/D90/AQ/T45C

 
http://clic2.sante-nature-innovation.fr/t/EQ/AAFL_Q/AAFYZQ/ADsxwQ/AAPJEQ/D94/AQ/Y6-Q

 
http://clic2.sante-nature-innovation.fr/t/EQ/AAFL_Q/AAFYZQ/ADsxwQ/AAPJEQ/D98/AQ/ajn6

 
http://clic2.sante-nature-innovation.fr/t/EQ/AAFL_Q/AAFYZQ/ADsxwQ/AAPJEQ/D_A/AQ/AjjJ

 
http://clic2.sante-nature-innovation.fr/t/EQ/AAFL_Q/AAFYZQ/ADsxwQ/AAPJEQ/D_E/AQ/oBEL

La Lettre du Professeur Joyeux est un service d'information indépendant sur la 
santé, spécialisé dans la prévention des maladies auprès du grand public et des 
familles. Rendez-vous ici pour vous inscrire gratuitement 
http://clic2.sante-nature-innovation.fr/t/EQ/AAFL_Q/AAFYZQ/ADsxwQ/AAPJEQ/NzE2Mzl8aHR0cDovL2VkaXRpb25zLnNhbnRlbmF0dXJlaW5ub3ZhdGlvbi5jb20vMTk5MTg3Lz9lbWFpbD1ERUJJQU4tU0NJRU5DRS1NQUlOVEFJTkVSUyU0MGxpc3RzLmFsaW90aC5kZWJpYW4ub3JnJnV0bV9zb3VyY2U9TFBKJnV0bV9tZWRpdW09TmV3c2xldHRlci1ncmF0dWl0ZSZ1dG1fY2FtcGFpZ249MjAxNjA0LTA1LW5ldXJvbmVz./AQ/xMTN
 (vous pouvez vous http://service2.sante-nature-innovation.fr//unsubscribe.php?mid=84985=3879361=17=88165=0nmH18=MC2;>désinscrire
 en vous rendant ici).





Prenez soin des neurones de votre cœur et de votre intestin

Moi votre cerveau, j’agis et suis un peu dans votre cœur, votre intestin, 
chacune de vos cellules...



Je suis dans votre tête, vous le savez bien, mais peut-être ignorez- vous que 
je me niche jusque dans votre cœur et votre ventre.



Les neurones de votre coeur

De votre cœur partent des connexions neuronales, biochimiques, biophysiques et 
énergétiques. Les chercheurs y observent jusqu’à 40 000 neurones et un 
va-et-vient de neurotransmetteurs. Les médecins traditionnels chinois y voient 
même le centre du shen , autrement dit de l’esprit, du psychisme, des émotions, 
de la conscience.



Votre cœur a ses raisons que j’ignore parfois mais je ne peux y être 
indifférent. Il peut être bien plus fort que moi, plus rayonnant disons : son 
champ électromagnétique est 5 000 fois plus puissant que le mien. Ensemble on 
peut faire du bon travail, mais que d’émotions peuvent passer de l’un à 
l’autre. Au fond, même très différents, nous nous aimons beaucoup !





Les neurones de votre intestin

Certains scientifiques disent que vos intestins comptent 200 millions de 
neurones. C’est un peu exagéré ! Disons plutôt 100 millions. Ils en parlent 
comme de votre «deuxième cerveau» ou « cerveau entérique ». C’est encore 
exagéré (vous pouvez vivre sans intestin grâce à l’ingéniosité de votre 
médecine) mais il est vrai que je travaille en collaboration étroite avec 
l’intestin, qui m’informe également.



Les thérapeutes ont coutume de dire depuis Hippocrate, le père de la Médecine 
que « la santé commence dans l’intestin » et, en Asie, le ventre est depuis 
toujours considéré comme le centre de l’énergie et de la santé... C’est vrai, 
je suis très réactif à ce que me dit votre ventre, et les signaux que j’envoie 
en retour dans votre corps en dépendent.



Votre cœur, votre intestin grêle, votre colon, sont en lien avec moi, votre 
cerveau, comme toute cellule de votre corps, ce que vous ne comprenez peut-être 
pas bien encore.



Pensez-y : je vais mal quand votre cœur se ferme ou souffre, quand vous 
l’empoisonnez de tristes émotions, de mauvais sentiments. Je déraille quand 
votre flore intestinale (pardon, votre microbiote !) dégénère.



Les dégâts que vous vous infligez par votre alimentation et votre mauvaise 
hygiène de vie m’affectent gravement. Des liens étroits existent bel et bien 
entre ma santé et celle de vos intestins.



La science la plus avancée le découvre peu à peu à travers des maladies comme 
la dépression, l’hyperactivité, la schizophrénie, l’autisme... Alzheimer et 
Parkinson [1].â¨



Connaissez-vous par exemple le syndrome entéro-psychologique ? Ce syndrome au 
nom barbare ne vous parle sans doute pas et ne fait pas encore consensus chez 
vos médecins, mais il y a du bon sens dans cette façon de décrire l’impact de 
ce que nous mangeons sur les pathologies psychologiques. Comment voulez-vous 
que l’empoisonnement de vos entrailles et les mauvais soins que vous faites 
subir à vos intestins ne m’atteignent pas d’une façon ou d’une autre [2] ?





Les nerfs ”Vague” : une nouvelle promesse thérapeutique !

Je vous l’ai déjà dit, je possède en moi votre cerveau, l’origine des 12 paires 
de nerfs crâniens. Elles permettent le fonctionnement des yeux (4 paires de 
nerfs, une pour la vision et 3 pour les mouvements de yeux), une pour l’odorat, 
deux pour la langue, une pour l’audition, deux pour notre visage (sourires et 
pleurs), une pour la musculature de vos épaules (les lever) et la dixième 
paire, les nerfs Vague droit et gauche.



Ces nerfs ”vagues” sont également appelés nerfs pneumogastriques ou nerfs 
cardio-pneumo-entériques ,