date:20170108

binary:r-cran-aer is NEW.
binary:r-cran-aer is NEW.
source:r-cran-aer is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
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If you have any questions, you may reply to this email.

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 or https://ftp-master.debian.org/backports-new.html for *-backports

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fflas-ffpack_2.2.2-4_source.changes ACCEPTED into unstable



Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 13:22:58 -0500
Source: fflas-ffpack
Binary: fflas-ffpack fflas-ffpack-common fflas-ffpack-user-doc 
fflas-ffpack-dev-doc
Architecture: source
Version: 2.2.2-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Doug Torrance 
Description:
 fflas-ffpack - Finite field linear algebra subroutines/package
 fflas-ffpack-common - Finite field linear algebra subroutines/package - common 
files
 fflas-ffpack-dev-doc - FFLAS-FFPACK Developer Documentation
 fflas-ffpack-user-doc - FFLAS-FFPACK User Documentation
Changes:
 fflas-ffpack (2.2.2-4) unstable; urgency=medium
 .
   * debian/rules
 - Add -fno-strict-aliasing to CXXFLAGS; fixes FTBFS on armel.
Checksums-Sha1:
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 5dfb4068aef5c4e3970bff83ae8c0a1ae106dd9f 6908 
fflas-ffpack_2.2.2-4.debian.tar.xz
Checksums-Sha256:
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fflas-ffpack_2.2.2-4.debian.tar.xz
Files:
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fflas-ffpack_2.2.2-4.debian.tar.xz

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Thank you for your contribution to Debian.

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Processing of fflas-ffpack_2.2.2-4_source.changes

fflas-ffpack_2.2.2-4_source.changes uploaded successfully to localhost
along with the files:
  fflas-ffpack_2.2.2-4.dsc
  fflas-ffpack_2.2.2-4.debian.tar.xz

Greetings,

Your Debian queue daemon (running on host usper.debian.org)

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Processing of r-cran-aer_1.2-5-1_amd64.changes

r-cran-aer_1.2-5-1_amd64.changes uploaded successfully to localhost
along with the files:
  r-cran-aer_1.2-5-1.dsc
  r-cran-aer_1.2-5.orig.tar.gz
  r-cran-aer_1.2-5-1.debian.tar.xz
  r-cran-aer_1.2-5-1_all.deb
  r-cran-aer_1.2-5-1_amd64.buildinfo

Greetings,

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Bug#846014: marked as done (gnuplot-doc: gnuplot-doc has invalid info-dir-entry)

Your message dated Sun, 08 Jan 2017 19:48:29 +
with message-id 
and subject line Bug#844461: fixed in gnuplot 5.0.5+dfsg1-5
has caused the Debian Bug report #844461,
regarding gnuplot-doc: gnuplot-doc has invalid info-dir-entry
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
844461: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844461
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gnuplot-doc
Version: 5.0.5+dfsg1-4
Severity: normal

Hi,

Current info for gnuplot-doc is "gnuplot.info.gz". But info-dir-entry of
"gnuplot.info.gz" has,

START-INFO-DIR-ENTRY
* GNUPLOT5: (gnuplot5).   An Interactive Plotting Program
END-INFO-DIR-ENTRY

So, by mismatch of "(gnuplot5)" vs "gnuplot.info.gz", the info browser
finds "gnuplot5.info.gz", instead of "gnuplot.info.gz".

E.g.

   $ info gnuplot5
   [info says "Unable to find node referenced by 'GNUPLOT5' in '(dir)Top'."]


-- System Information:
Debian Release: stretch/sid
  APT prefers testing-debug
  APT policy: (500, 'testing-debug'), (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.8.10 (SMP w/8 CPU cores)
Locale: LANG=ja_JP.UTF-8, LC_CTYPE=ja_JP.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Init: sysvinit (via /sbin/init)

-- 
OGAWA Hirofumi 
--- End Message ---
--- Begin Message ---
Source: gnuplot
Source-Version: 5.0.5+dfsg1-5

We believe that the bug you reported is fixed in the latest version of
gnuplot, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 844...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Anton Gladky  (supplier of updated gnuplot package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 20:39:38 +0100
Source: gnuplot
Binary: gnuplot gnuplot-doc gnuplot-nox gnuplot-qt gnuplot-x11 gnuplot-data 
gnuplot5 gnuplot5-nox gnuplot5-x11 gnuplot5-qt
Architecture: source
Version: 5.0.5+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Anton Gladky 
Description:
 gnuplot- Command-line driven interactive plotting program, version 5
 gnuplot-data - Command-line driven interactive plotting program. Data-files
 gnuplot-doc - Command-line driven interactive plotting program. Doc-package
 gnuplot-nox - Command-line driven interactive plotting program. No-X package
 gnuplot-qt - Command-line driven interactive plotting program. QT-package
 gnuplot-x11 - Command-line driven interactive plotting program. X-package
 gnuplot5   - transitional package
 gnuplot5-nox - transitional package
 gnuplot5-qt - transitional package
 gnuplot5-x11 - transitional package
Closes: 837315 844461 846988
Changes:
 gnuplot (5.0.5+dfsg1-5) unstable; urgency=medium
 .
   [ Anton Gladky ]
   * [82388b2] Remove outdated info-patch. (Closes: #844461)
   * [76f823f] Remove outdated font-patch. (Closes: #837315)
 .
   [ Rob Browning ]
   * [9a662e6] Change build dependency to "emacs25-nox | emacs25 | emacs24"
   to support and prefer emacs25. (Closes: #846988)
Checksums-Sha1:
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 88dfd851ae09b7dcb38b8d17e1a7b2bdc65c6753 28560 
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gnuplot_5.0.5+dfsg1-5.debian.tar.xz
Files:
 bd49c49bf59d5a0d4dd0051265623f11 2948 math optional gnuplot_5.0.5+dfsg1-5.dsc
 f454edd9a6ad1ba9f313f7004788549c 28560 math optional 
gnuplot_5.0.5+dfsg1-5.debian.tar.xz

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Bug#846988: marked as done (Please migrate to emacs25)

Your message dated Sun, 08 Jan 2017 19:48:29 +
with message-id 
and subject line Bug#846988: fixed in gnuplot 5.0.5+dfsg1-5
has caused the Debian Bug report #846988,
regarding Please migrate to emacs25
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
846988: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=846988
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: egg
Version: 4.0.6+0.20041122cvs-19
Usertags: debian-emac...@lists.debian.org

We'd like to remove emacs24 from the archive as soon as it's feasible,
so please try to upgrade to emacs25, or add optional support for emacs25
as soon as you can.

For example, assuming the package works with emacs25, a dependency like

  emacs25-nox | emacs25 | emacs24

should suffice.

Thanks
-- 
Rob Browning
rlb @defaultvalue.org and @debian.org
GPG as of 2011-07-10 E6A9 DA3C C9FD 1FF8 C676 D2C4 C0F0 39E9 ED1B 597A
GPG as of 2002-11-03 14DD 432F AE39 534D B592 F9A0 25C8 D377 8C7E 73A4
--- End Message ---
--- Begin Message ---
Source: gnuplot
Source-Version: 5.0.5+dfsg1-5

We believe that the bug you reported is fixed in the latest version of
gnuplot, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 846...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Anton Gladky  (supplier of updated gnuplot package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 20:39:38 +0100
Source: gnuplot
Binary: gnuplot gnuplot-doc gnuplot-nox gnuplot-qt gnuplot-x11 gnuplot-data 
gnuplot5 gnuplot5-nox gnuplot5-x11 gnuplot5-qt
Architecture: source
Version: 5.0.5+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Anton Gladky 
Description:
 gnuplot- Command-line driven interactive plotting program, version 5
 gnuplot-data - Command-line driven interactive plotting program. Data-files
 gnuplot-doc - Command-line driven interactive plotting program. Doc-package
 gnuplot-nox - Command-line driven interactive plotting program. No-X package
 gnuplot-qt - Command-line driven interactive plotting program. QT-package
 gnuplot-x11 - Command-line driven interactive plotting program. X-package
 gnuplot5   - transitional package
 gnuplot5-nox - transitional package
 gnuplot5-qt - transitional package
 gnuplot5-x11 - transitional package
Closes: 837315 844461 846988
Changes:
 gnuplot (5.0.5+dfsg1-5) unstable; urgency=medium
 .
   [ Anton Gladky ]
   * [82388b2] Remove outdated info-patch. (Closes: #844461)
   * [76f823f] Remove outdated font-patch. (Closes: #837315)
 .
   [ Rob Browning ]
   * [9a662e6] Change build dependency to "emacs25-nox | emacs25 | emacs24"
   to support and prefer emacs25. (Closes: #846988)
Checksums-Sha1:
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 88dfd851ae09b7dcb38b8d17e1a7b2bdc65c6753 28560 
gnuplot_5.0.5+dfsg1-5.debian.tar.xz
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gnuplot_5.0.5+dfsg1-5.debian.tar.xz
Files:
 bd49c49bf59d5a0d4dd0051265623f11 2948 math optional gnuplot_5.0.5+dfsg1-5.dsc
 f454edd9a6ad1ba9f313f7004788549c 28560 math optional 
gnuplot_5.0.5+dfsg1-5.debian.tar.xz

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Bug#837315: marked as done (gnuplot-nox: possibly unnecessary patch 05_default_gd_font.diff)

Your message dated Sun, 08 Jan 2017 19:48:29 +
with message-id 
and subject line Bug#837315: fixed in gnuplot 5.0.5+dfsg1-5
has caused the Debian Bug report #837315,
regarding gnuplot-nox: possibly unnecessary patch 05_default_gd_font.diff
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
837315: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837315
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gnuplot-nox
Version: 5.0.4+dfsg1-3
Severity: minor

Hi there,

I believe the patch 05_default_gd_font.diff that is applied to the
Debian gnuplot package is not necessary (anymore?). In turn, I believe
it is even quite counter-productive.

Let's have a look at the code that the patch changes:

if (external_default)
png_state.ttffont = gp_strdup(external_default);
else/* Might as well try some plausible font; it's no orse than 
failing immediately */
png_state.ttffont = gp_strdup("arial");

free(png_state.default_ttffont);
png_state.default_ttffont = gp_strdup(png_state.ttffont);
if (png_state.default_ttfsize == 0)
png_state.default_ttfsize = 2 * term->h_char - 2;

/* First try the old GDFONTPATH mechanism for locating fonts */
(void)gdUseFontConfig(0);
err = gdImageStringFT(NULL, [0], 0,
png_state.ttffont, 
(double)png_state.default_ttfsize*png_state.fontscale,
0.0, 0, 0, "test");

/* If that didn't work, try again using fontconfig mechanism */
if (err && gdUseFontConfig(1)) {
err = gdImageStringFT(NULL, [0], 0,
png_state.ttffont, 
(double)png_state.default_ttfsize*png_state.fontscale,
0.0, 0, 0, "test");
}

In the first paragraph, if the external_default variable isn't set,
the png_state.ttffont pointer is set to point to the string "arial".
This is the string that is replaced by the patch in question by the
actual path name of the Sans Liberation Regular TTF font file.

Let's ignore the second paragraph.

The third paragraph attempts to locate a font by that name *without*
using fontconfig. This is probably about to fail for "arial" as well
as for most other fonts, as the number of font names recognized by the
gd library itself is rather limited. This paragraph is probably only
interesting if the external_default variable is set.

In the fourth paragraph the font location is attempted again, this
time using fontconfig. This is the most interesting part of the code.
As the gd library in Debian is configured with fontconfig support, it
will try to find the font that matches the search pattern "arial" as
good as possible. On most systems which have fonts-liberation
installed, it will most probably return Liberation Sans Regular, which
is exactly what the patch attempts to achieve. But if you have the
actual Arial font from the msttcorefonts package installed, it will
find and use this. And if you have neither the original Arial nor the
Liberation Sans replacement installed, it will find another font that
matches Arial as closely as possible, because it has dozens of rules
to determine which font is a good replacement for what.

This is where the patch becomes counter-productive: By passing the
full path to the Liberation font to fontconfig, you take away its
ability to substitute this font for something similar and force it to
fall back to the default font if the requested one is not found.

TL;DR: Please consider disabling this patch. Fontconfig already does
what this patch wants to achieve and acts more reasonable if the font
that is hard-coded by the patch cannot be found.

Thanks,

Fabian



-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'experimental'), (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
Source: gnuplot
Source-Version: 5.0.5+dfsg1-5

We believe that the bug you reported is fixed in the latest version of
gnuplot, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 837...@bugs.debian.org,
and the maintainer

Bug#844461: marked as done (gnuplot-doc: buggy references to gnuplot5)

Your message dated Sun, 08 Jan 2017 19:48:29 +
with message-id 
and subject line Bug#844461: fixed in gnuplot 5.0.5+dfsg1-5
has caused the Debian Bug report #844461,
regarding gnuplot-doc: buggy references to gnuplot5
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
844461: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844461
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gnuplot-doc
Version: 5.0.5+dfsg1-4
Severity: normal

In the Info main menu:

* GNUPLOT5: (gnuplot5). An Interactive Plotting Program

which is now incorrect.

I suppose that the patch debian/patches/12_info.patch should no longer
be applied.

-- System Information:
Debian Release: stretch/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'stable-updates'), (500, 
'unstable'), (500, 'testing'), (500, 'stable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 4.8.0-1-amd64 (SMP w/8 CPU cores)
Locale: LANG=POSIX, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

-- no debconf information
--- End Message ---
--- Begin Message ---
Source: gnuplot
Source-Version: 5.0.5+dfsg1-5

We believe that the bug you reported is fixed in the latest version of
gnuplot, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 844...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Anton Gladky  (supplier of updated gnuplot package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 20:39:38 +0100
Source: gnuplot
Binary: gnuplot gnuplot-doc gnuplot-nox gnuplot-qt gnuplot-x11 gnuplot-data 
gnuplot5 gnuplot5-nox gnuplot5-x11 gnuplot5-qt
Architecture: source
Version: 5.0.5+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Anton Gladky 
Description:
 gnuplot- Command-line driven interactive plotting program, version 5
 gnuplot-data - Command-line driven interactive plotting program. Data-files
 gnuplot-doc - Command-line driven interactive plotting program. Doc-package
 gnuplot-nox - Command-line driven interactive plotting program. No-X package
 gnuplot-qt - Command-line driven interactive plotting program. QT-package
 gnuplot-x11 - Command-line driven interactive plotting program. X-package
 gnuplot5   - transitional package
 gnuplot5-nox - transitional package
 gnuplot5-qt - transitional package
 gnuplot5-x11 - transitional package
Closes: 837315 844461 846988
Changes:
 gnuplot (5.0.5+dfsg1-5) unstable; urgency=medium
 .
   [ Anton Gladky ]
   * [82388b2] Remove outdated info-patch. (Closes: #844461)
   * [76f823f] Remove outdated font-patch. (Closes: #837315)
 .
   [ Rob Browning ]
   * [9a662e6] Change build dependency to "emacs25-nox | emacs25 | emacs24"
   to support and prefer emacs25. (Closes: #846988)
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gnuplot_5.0.5+dfsg1-5_source.changes ACCEPTED into unstable



Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 20:39:38 +0100
Source: gnuplot
Binary: gnuplot gnuplot-doc gnuplot-nox gnuplot-qt gnuplot-x11 gnuplot-data 
gnuplot5 gnuplot5-nox gnuplot5-x11 gnuplot5-qt
Architecture: source
Version: 5.0.5+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Anton Gladky 
Description:
 gnuplot- Command-line driven interactive plotting program, version 5
 gnuplot-data - Command-line driven interactive plotting program. Data-files
 gnuplot-doc - Command-line driven interactive plotting program. Doc-package
 gnuplot-nox - Command-line driven interactive plotting program. No-X package
 gnuplot-qt - Command-line driven interactive plotting program. QT-package
 gnuplot-x11 - Command-line driven interactive plotting program. X-package
 gnuplot5   - transitional package
 gnuplot5-nox - transitional package
 gnuplot5-qt - transitional package
 gnuplot5-x11 - transitional package
Closes: 837315 844461 846988
Changes:
 gnuplot (5.0.5+dfsg1-5) unstable; urgency=medium
 .
   [ Anton Gladky ]
   * [82388b2] Remove outdated info-patch. (Closes: #844461)
   * [76f823f] Remove outdated font-patch. (Closes: #837315)
 .
   [ Rob Browning ]
   * [9a662e6] Change build dependency to "emacs25-nox | emacs25 | emacs24"
   to support and prefer emacs25. (Closes: #846988)
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Thank you for your contribution to Debian.

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Processing of gnuplot_5.0.5+dfsg1-5_source.changes

gnuplot_5.0.5+dfsg1-5_source.changes uploaded successfully to localhost
along with the files:
  gnuplot_5.0.5+dfsg1-5.dsc
  gnuplot_5.0.5+dfsg1-5.debian.tar.xz

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Bug#846988: gnuplot: diff for NMU version 5.0.5+dfsg1-4.1

2017-01-08 Thread Anton Gladky

Dear Rob,

thank you for your patch and NMU. I have just integrated
your diff in to the version gnuplot_5.0.5+dfsg1-5
together with some other changes and uploaded it into
unstable.

Please cancel NMU.

Best regards

Anton


2017-01-07 22:35 GMT+01:00 Rob Browning :
> Control: tags 846988 + patch
> Control: tags 846988 + pending
>
> Dear maintainer,
>
> I've prepared an NMU for gnuplot (versioned as 5.0.5+dfsg1-4.1) and
> uploaded it to DELAYED/10. Please feel free to tell me if I
> should delay it longer.
>
> Regards.
> diff -Nru gnuplot-5.0.5+dfsg1/debian/changelog 
> gnuplot-5.0.5+dfsg1/debian/changelog
> --- gnuplot-5.0.5+dfsg1/debian/changelog2016-11-13 12:41:25.0 
> -0600
> +++ gnuplot-5.0.5+dfsg1/debian/changelog2017-01-07 15:23:15.0 
> -0600
> @@ -1,3 +1,11 @@
> +gnuplot (5.0.5+dfsg1-4.1) unstable; urgency=medium
> +
> +  * Non-maintainer upload.
> +  * Change build dependency to "emacs25-nox | emacs25 | emacs24" to
> +support and prefer emacs25. (Closes: #846988)
> +
> + -- Rob Browning   Sat, 07 Jan 2017 15:23:15 -0600
> +
>  gnuplot (5.0.5+dfsg1-4) unstable; urgency=medium
>
>* [3ff368e] Move info-file into gnuplot-doc. (Closes: #843987)
> diff -Nru gnuplot-5.0.5+dfsg1/debian/control 
> gnuplot-5.0.5+dfsg1/debian/control
> --- gnuplot-5.0.5+dfsg1/debian/control  2016-11-13 12:41:25.0 -0600
> +++ gnuplot-5.0.5+dfsg1/debian/control  2017-01-07 15:23:15.0 -0600
> @@ -33,7 +33,7 @@
> texlive-latex-recommended,
> libwxgtk3.0-dev,
> zlib1g-dev,
> -   emacs24
> +   emacs25-nox | emacs25 | emacs24
>  Standards-Version: 3.9.8
>  Vcs-Browser: 
> https://anonscm.debian.org/cgit/debian-science/packages/gnuplot.git
>  Vcs-Git: https://anonscm.debian.org/git/debian-science/packages/gnuplot.git
>
> --
> debian-science-maintainers mailing list
> debian-science-maintainers@lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

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Moving r-cran-zelig into Debian Science team maintenance

Hi Chris,

I noticed that r-cran-zelig is lagging behind upstream.  Unfortunately
we will not make it into Debian 9 since the latest upstream version
needs two not yet packaged dependencies.  I just uploaded r-cran-survey
to new and r-cran-aer will follow soon.  Since you previously agreed
upon team maintenance in Debian Science team I assumed you would agree
also to do this with r-cran-zelig.  Thus I created a packaging Git
repository

   https://anonscm.debian.org/git/debian-science/packages/r-cran-zelig.git

and intend to upload it.  Since we need to wait for packages in new I
think we can also rename the source package from zelig to r-cran-zelig
which is an acceptable delay by the detour via new queue.

Please tell me if you do not like this procedure - otherwise I'll
proceed as with the other packages.

Kind regards

   Andreas.

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Processed: Merge

Processing commands for cont...@bugs.debian.org:

> merge 844461 846014
Bug #844461 [gnuplot-doc] gnuplot-doc: buggy references to gnuplot5
Bug #846014 [gnuplot-doc] gnuplot-doc: gnuplot-doc has invalid info-dir-entry
Merged 844461 846014
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
844461: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844461
846014: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=846014
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Bug#844461: Merge

2017-01-08 Thread Anton Gladky

merge 844461 846014
thanks

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ovito_2.8.1+dfsg1-2_source.changes ACCEPTED into unstable



Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 18:56:50 +0100
Source: ovito
Binary: ovito ovito-doc
Architecture: source
Version: 2.8.1+dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Anton Gladky 
Description:
 ovito  - visualization and analysis tool for atomistic simulation data
 ovito-doc  - documentation for ovito
Changes:
 ovito (2.8.1+dfsg1-2) unstable; urgency=medium
 .
   * [f0b0b49] Disable unit-test failures.
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Thank you for your contribution to Debian.

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Processing of ovito_2.8.1+dfsg1-2_source.changes

ovito_2.8.1+dfsg1-2_source.changes uploaded successfully to localhost
along with the files:
  ovito_2.8.1+dfsg1-2.dsc
  ovito_2.8.1+dfsg1-2.debian.tar.xz

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r-cran-randomfields_3.1.36-1_amd64.changes ACCEPTED into unstable



Accepted:

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Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 17:05:46 +0100
Source: r-cran-randomfields
Binary: r-cran-randomfields
Architecture: source amd64
Version: 3.1.36-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Andreas Tille 
Description:
 r-cran-randomfields - GNU R simulation and analysis of random fields
Changes:
 r-cran-randomfields (3.1.36-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper 10
   * d/watch: version=4
   * Versioned Build-Depends: r-cran-randomfieldsutils (>= 0.3.15)
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r-cran-survey_3.31-5-1_amd64.changes is NEW

binary:r-cran-survey is NEW.
binary:r-cran-survey is NEW.
source:r-cran-survey is NEW.

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Processing of r-cran-survey_3.31-5-1_amd64.changes

r-cran-survey_3.31-5-1_amd64.changes uploaded successfully to localhost
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Re: New upstream version of RandomFields 3.1.36 fails to build from source

Hi Martin,

I have no idea why the package version of RandomFieldsUtils was not
verified in the Build process but after I added a versioned
Build-Depends in the debian/control file RandomFields builds fine.

Kind regards

  Andreas.

On Sun, Jan 08, 2017 at 01:12:02PM +0100, Martin Schlather wrote:
> Dear Andreas,
> 
> although I have changed RU_sqrtPosDef to RU_sqrtPosDefFree
> in direct.cc between the recent and the former version of 
> RandomFields, I am puzzled as both functions are defined 
> in exactly the same way in RandomFieldsUtils (in both the 
> current 0.3.15 and the former version 0.3.8; see functions 
> sqrtPosDef and sqrtPosDefFree in solve.cc and 
> init_RandomFieldsUtils.* )
> 
> The file direct.cc is the alphabetically first one that 
> uses an RU_* function, i.e. a function exported from
> RandomFieldsUtils. Is there a miscommunication between
> RandomFields and RandomFieldsUtils? 
> 
> Best,
> Martin
> 
> 
> 
> 
> On 08.01.2017 09:00, Andreas Tille wrote:
> > Hi Martin,
> >
> > I intended to update the Debian package of randomfields but I've got the
> > following error:
> >
> > ...
> > g++ -I/usr/share/R/include -DNDEBUG   
> > -I"/usr/lib/R/site-library/RandomFieldsUtils/include"   -fpic  -g -O2 
> > -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat 
> > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c 
> > cubicsolver.cc -o cubicsolver.o
> > g++ -I/usr/share/R/include -DNDEBUG   
> > -I"/usr/lib/R/site-library/RandomFieldsUtils/include"   -fpic  -g -O2 
> > -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat 
> > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c direct.cc -o 
> > direct.o
> > direct.cc: In function 'int init_directGauss(cov_model*, gen_storage*)':
> > direct.cc:196:52: error: 'RU_sqrtPosDefFree' was not declared in this scope
> >err = RU_sqrtPosDefFree(Cov, vdimtot, cov->Ssolve);
> > ^
> > /usr/lib/R/etc/Makeconf:139: recipe for target 'direct.o' failed
> > make[1]: *** [direct.o] Error 1
> > make[1]: Leaving directory '/build/r-cran-randomfields-3.1.36/src'
> > make[1]: Entering directory '/build/r-cran-randomfields-3.1.36/src'
> > make[1]: Leaving directory '/build/r-cran-randomfields-3.1.36/src'
> > ERROR: compilation failed for package 'RandomFields'
> >
> >
> > Do you have any idea what might be wrong here?
> >
> > Kind regards
> >
> >   Andreas.
> >
> 
> 
> -- 
> Prof. Dr. Martin Schlather
> Institut für Mathematik
> Universität Mannheim
> A5, 6, B 118
> D-68131 Mannheim 
> 
> schlat...@math.uni-mannheim.de  
> https://ms.math.uni-mannheim.de
> phone: +49 (0)621 181 2552
> 
> 

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Bug#850622: ITP: r-cran-survey -- GNU R analysis of complex survey samples

Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: r-cran-survey
  Version : 3.31-5
  Upstream Author : Thomas Lumley 
* URL : https://cran.r-project.org/package=survey
* License : GPL
  Programming Lang: GNU R
  Description : GNU R analysis of complex survey samples
 Summary statistics, two-sample tests, rank tests, generalised linear
 models, cumulative link models, Cox models, loglinear models, and
 general maximum pseudolikelihood estimation for multistage stratified,
 cluster-sampled, unequally weighted survey samples. Variances by Taylor
 series linearisation or replicate weights. Post-stratification,
 calibration, and raking. Two-phase subsampling designs. Graphics. PPS
 sampling without replacement. Principal components, factor analysis.


Remark: This package is needed to upgrade r-cran-zelig to the latest
upstream version.  It will be maintained by the Debian Science team
at
   https://anonscm.debian.org/git/debian-science/packages/r-cran-survey.git

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Re: New upstream version of RandomFields 3.1.36 fails to build from source

2017-01-08 Thread Dirk Eddelbuettel


On 8 January 2017 at 13:12, Martin Schlather wrote:
| Dear Andreas,
| 
| although I have changed RU_sqrtPosDef to RU_sqrtPosDefFree
| in direct.cc between the recent and the former version of 
| RandomFields, I am puzzled as both functions are defined 
| in exactly the same way in RandomFieldsUtils (in both the 
| current 0.3.15 and the former version 0.3.8; see functions 
| sqrtPosDef and sqrtPosDefFree in solve.cc and 
| init_RandomFieldsUtils.* )
| 
| The file direct.cc is the alphabetically first one that 
| uses an RU_* function, i.e. a function exported from
| RandomFieldsUtils. Is there a miscommunication between
| RandomFields and RandomFieldsUtils? 

Just to cover the obvious: you updated the declaration in a header and
ensured it is the only one?  If so then the compiler should not complain.

Seeing the 'error: 'RU_sqrtPosDefFree' was not declared in this scope'
strongly suggests that didn't happen.

Dirk, who is not familiar with either R package
 
| Best,
| Martin
| 
| 
| 
| 
| On 08.01.2017 09:00, Andreas Tille wrote:
| > Hi Martin,
| >
| > I intended to update the Debian package of randomfields but I've got the
| > following error:
| >
| > ...
| > g++ -I/usr/share/R/include -DNDEBUG   
-I"/usr/lib/R/site-library/RandomFieldsUtils/include"   -fpic  -g -O2 
-fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat 
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c cubicsolver.cc 
-o cubicsolver.o
| > g++ -I/usr/share/R/include -DNDEBUG   
-I"/usr/lib/R/site-library/RandomFieldsUtils/include"   -fpic  -g -O2 
-fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat 
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c direct.cc -o 
direct.o
| > direct.cc: In function 'int init_directGauss(cov_model*, gen_storage*)':
| > direct.cc:196:52: error: 'RU_sqrtPosDefFree' was not declared in this scope
| >err = RU_sqrtPosDefFree(Cov, vdimtot, cov->Ssolve);
| > ^
| > /usr/lib/R/etc/Makeconf:139: recipe for target 'direct.o' failed
| > make[1]: *** [direct.o] Error 1
| > make[1]: Leaving directory '/build/r-cran-randomfields-3.1.36/src'
| > make[1]: Entering directory '/build/r-cran-randomfields-3.1.36/src'
| > make[1]: Leaving directory '/build/r-cran-randomfields-3.1.36/src'
| > ERROR: compilation failed for package 'RandomFields'
| >
| >
| > Do you have any idea what might be wrong here?
| >
| > Kind regards
| >
| >   Andreas.
| >
| 
| 
| -- 
| Prof. Dr. Martin Schlather
| Institut für Mathematik
| Universität Mannheim
| A5, 6, B 118
| D-68131 Mannheim 
| 
| schlat...@math.uni-mannheim.de  
| https://ms.math.uni-mannheim.de
| phone: +49 (0)621 181 2552
| 

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Bug#848761: marked as done (ovito: FTBFS: Test failures)

Your message dated Sun, 08 Jan 2017 15:18:57 +
with message-id 
and subject line Bug#848761: fixed in ovito 2.8.1+dfsg1-1
has caused the Debian Bug report #848761,
regarding ovito: FTBFS: Test failures
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
848761: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848761
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ovito
Version: 2.8.0+dfsg2-2
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20161219 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
>48 - wigner_seitz_modifier.py (Failed)
>49 - snippet_bonds_data_object.py (Failed)
>51 - snippet_cluster_analysis_modifier.py (Failed)
>53 - snippet_combine_particle_sets_modifier.py (Failed)
>54 - snippet_common_neighbor_analysis_modifier.py (Failed)
>55 - snippet_construct_surface_modifier.py (Failed)
>57 - snippet_coordination_analysis_modifier.py (Failed)
>59 - snippet_dislocation_analysis_modifier.py (Failed)
>63 - snippet_import_access_animation_frames.py (Failed)
>65 - snippet_mutable_array.py (Failed)
>67 - snippet_object_node_example.py (Failed)
>73 - snippet_select_expression_modifier.py (Failed)
>74 - snippet_select_particle_type_modifier.py (Failed)
>77 - snippet_surface_mesh.py (Failed)
> Errors while running CTest
> Makefile:75: recipe for target 'test' failed

The full build log is available from:
   http://aws-logs.debian.net/2016/12/19/ovito_2.8.0+dfsg2-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: ovito
Source-Version: 2.8.1+dfsg1-1

We believe that the bug you reported is fixed in the latest version of
ovito, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 848...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Anton Gladky  (supplier of updated ovito package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 15:50:21 +0100
Source: ovito
Binary: ovito ovito-doc
Architecture: source
Version: 2.8.1+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Anton Gladky 
Description:
 ovito  - visualization and analysis tool for atomistic simulation data
 ovito-doc  - documentation for ovito
Closes: 848761
Changes:
 ovito (2.8.1+dfsg1-1) unstable; urgency=medium
 .
   [ Ghislain Antony Vaillant ]
   * [72aa97b] Fix "No files matched excluded pattern" reported by uscan
   * [8480ecd] Update watch file
 .
   [ Anton Gladky ]
   * [2aa0adf] Remove patch applied by upstream.
   * [0a4cca5] Refresh patch.
   * [cf985df] Minor fixes in d/copyright.
   * [47c0aff] New upstream version 2.8.1+dfsg1. (Closes: #848761)
Checksums-Sha1:
 28f2766ece66b112a2c296b7c0fcb1d9ba7c7877 2591 ovito_2.8.1+dfsg1-1.dsc
 6e95e787bcf2390e7982ee2c1c17ceacdcea9474 32206832 ovito_2.8.1+dfsg1.orig.tar.xz
 2ef505048f72d0118346acfa6c8067bbf4fc621a 11024 
ovito_2.8.1+dfsg1-1.debian.tar.xz
Checksums-Sha256:
 ecb1f6a6c3b2f2e3a2c92c5228090f3377e5fd810bada47bdf314af60f1c354b 2591 
ovito_2.8.1+dfsg1-1.dsc
 6b184aad3ac3a427916789ab1e28236d4bbca2c82d3801d950b0eb57ed5e4d60 32206832 
ovito_2.8.1+dfsg1.orig.tar.xz
 9437847f4f86cfa73bc02fade87afef5730d3667ceaa2fc69aa8389c920f828e 11024 
ovito_2.8.1+dfsg1-1.debian.tar.xz
Files:
 1980f7896c94b36fb76b82040df7a758 2591 science extra ovito_2.8.1+dfsg1-1.dsc
 212288623432a76c51b051fc30b72a39 32206832 science extra 
ovito_2.8.1+dfsg1.orig.tar.xz
 cf9e17e45f1cd30b9a0746753dab0191 11024

ovito_2.8.1+dfsg1-1_source.changes ACCEPTED into unstable



Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 15:50:21 +0100
Source: ovito
Binary: ovito ovito-doc
Architecture: source
Version: 2.8.1+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Anton Gladky 
Description:
 ovito  - visualization and analysis tool for atomistic simulation data
 ovito-doc  - documentation for ovito
Closes: 848761
Changes:
 ovito (2.8.1+dfsg1-1) unstable; urgency=medium
 .
   [ Ghislain Antony Vaillant ]
   * [72aa97b] Fix "No files matched excluded pattern" reported by uscan
   * [8480ecd] Update watch file
 .
   [ Anton Gladky ]
   * [2aa0adf] Remove patch applied by upstream.
   * [0a4cca5] Refresh patch.
   * [cf985df] Minor fixes in d/copyright.
   * [47c0aff] New upstream version 2.8.1+dfsg1. (Closes: #848761)
Checksums-Sha1:
 28f2766ece66b112a2c296b7c0fcb1d9ba7c7877 2591 ovito_2.8.1+dfsg1-1.dsc
 6e95e787bcf2390e7982ee2c1c17ceacdcea9474 32206832 ovito_2.8.1+dfsg1.orig.tar.xz
 2ef505048f72d0118346acfa6c8067bbf4fc621a 11024 
ovito_2.8.1+dfsg1-1.debian.tar.xz
Checksums-Sha256:
 ecb1f6a6c3b2f2e3a2c92c5228090f3377e5fd810bada47bdf314af60f1c354b 2591 
ovito_2.8.1+dfsg1-1.dsc
 6b184aad3ac3a427916789ab1e28236d4bbca2c82d3801d950b0eb57ed5e4d60 32206832 
ovito_2.8.1+dfsg1.orig.tar.xz
 9437847f4f86cfa73bc02fade87afef5730d3667ceaa2fc69aa8389c920f828e 11024 
ovito_2.8.1+dfsg1-1.debian.tar.xz
Files:
 1980f7896c94b36fb76b82040df7a758 2591 science extra ovito_2.8.1+dfsg1-1.dsc
 212288623432a76c51b051fc30b72a39 32206832 science extra 
ovito_2.8.1+dfsg1.orig.tar.xz
 cf9e17e45f1cd30b9a0746753dab0191 11024 science extra 
ovito_2.8.1+dfsg1-1.debian.tar.xz

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Processing of ovito_2.8.1+dfsg1-1_source.changes

ovito_2.8.1+dfsg1-1_source.changes uploaded successfully to localhost
along with the files:
  ovito_2.8.1+dfsg1-1.dsc
  ovito_2.8.1+dfsg1.orig.tar.xz
  ovito_2.8.1+dfsg1-1.debian.tar.xz

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Bug#849150: sagemath: FTBFS on arm64 and ppc64el: cannot allocate memory building docs

2017-01-08 Thread Ximin Luo

Aaron M. Ucko:
> Ximin Luo  writes:
> 
>> The error occurs right when the docbuild starts, before it actually
>> attempts to build anything, so my guess is that it would also occur
>> when starting the normal Sage CLI. So I don't think we should skip the
>> docbuild and release the build products as-is.
> 
> Thanks for clarifying.  You might want to consider conditionalizing the
> docbuild anyway to save build time and disk space, since crashing at
> startup would presumably also break the test suite.
> 

This is certainly a possibility and would be an improvement, but is harder than 
it might first appear, because the test suite contains some tests that depend 
on the existence of the built documentation. We'd have to figure out how to 
also disable those as well.

But yes, we'll try to do this in the future when we have time.

X

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Bug#850027: libfreeimage3: freeimage 3.17.0+ds1-4 makes rviz unusable

2017-01-08 Thread Ghislain Vaillant

I believe it is worth trying, since neither the situation before nor
after freeimage 3.17.0+ds1-4 is ideal. Before, a set of plugins were no
longer loaded correctly (#841089) and after, the API was somewhat
changed (because of the dummy node introduced by the updated patch).

Besides, I am now wondering whether we actually did a rebuild of all
rdepends with 3.17.0+ds1-4?

Ghis

On 08/01/17 12:26, Anton Gladky wrote:

Hmm, I would then make an upoad to experimental first,
build all depends against this new version to detect
possible FTBFS and then upload to sid.

Not sure, whether we have enough time for now.

Cheers

Anton

2017-01-08 11:16 GMT+01:00 Ghislain Vaillant :

On Thu, 5 Jan 2017 21:57:53 + James Cowgill wrote:

Control: block 849696 by -1
Control: tags -1 patch

Hi,

This is of course the same bug as #849696 in OGRE, but I still think it
should be fixed in freeimage.

I'd like to propose this patch (a new version of
Disable-vendored-dependencies.patch is also attached):

https://anonscm.debian.org/cgit/users/jcowgill/freeimage.git/commit/?h=bug-850027=b5f51dbe600e475a6bfc8e0f52335136b57ca123

My patch reverts the one applied in #841089 which broke the API, and
instead of removing the G3 plugin, it includes a G3 plugin which does
nothing (trying to load a G3 file will always fail). The advantage of
this is that the API is identical to upstream and it should also fix
the issue in #841089 as well.

I like this. I'll roll an update in the next few days.

Thanks to everyone who were involved.

Ghis

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Bug#850027: libfreeimage3: freeimage 3.17.0+ds1-4 makes rviz unusable

2017-01-08 Thread Anton Gladky

Hmm, I would then make an upoad to experimental first,
build all depends against this new version to detect
possible FTBFS and then upload to sid.

Not sure, whether we have enough time for now.

Cheers

Anton


2017-01-08 11:16 GMT+01:00 Ghislain Vaillant :
> On Thu, 5 Jan 2017 21:57:53 + James Cowgill  wrote:
>>
>> Control: block 849696 by -1
>> Control: tags -1 patch
>>
>> Hi,
>>
>> This is of course the same bug as #849696 in OGRE, but I still think it
>> should be fixed in freeimage.
>>
>> I'd like to propose this patch (a new version of
>> Disable-vendored-dependencies.patch is also attached):
>>
>>
>> https://anonscm.debian.org/cgit/users/jcowgill/freeimage.git/commit/?h=bug-850027=b5f51dbe600e475a6bfc8e0f52335136b57ca123
>>
>> My patch reverts the one applied in #841089 which broke the API, and
>> instead of removing the G3 plugin, it includes a G3 plugin which does
>> nothing (trying to load a G3 file will always fail). The advantage of
>> this is that the API is identical to upstream and it should also fix
>> the issue in #841089 as well.
>
>
> I like this. I'll roll an update in the next few days.
>
> Thanks to everyone who were involved.
>
> Ghis
>
>
> --
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Re: New upstream version of RandomFields 3.1.36 fails to build from source

2017-01-08 Thread Martin Schlather

Dear Andreas,

although I have changed RU_sqrtPosDef to RU_sqrtPosDefFree
in direct.cc between the recent and the former version of 
RandomFields, I am puzzled as both functions are defined 
in exactly the same way in RandomFieldsUtils (in both the 
current 0.3.15 and the former version 0.3.8; see functions 
sqrtPosDef and sqrtPosDefFree in solve.cc and 
init_RandomFieldsUtils.* )

The file direct.cc is the alphabetically first one that 
uses an RU_* function, i.e. a function exported from
RandomFieldsUtils. Is there a miscommunication between
RandomFields and RandomFieldsUtils? 

Best,
Martin




On 08.01.2017 09:00, Andreas Tille wrote:
> Hi Martin,
>
> I intended to update the Debian package of randomfields but I've got the
> following error:
>
> ...
> g++ -I/usr/share/R/include -DNDEBUG   
> -I"/usr/lib/R/site-library/RandomFieldsUtils/include"   -fpic  -g -O2 
> -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat 
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c cubicsolver.cc 
> -o cubicsolver.o
> g++ -I/usr/share/R/include -DNDEBUG   
> -I"/usr/lib/R/site-library/RandomFieldsUtils/include"   -fpic  -g -O2 
> -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat 
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c direct.cc -o 
> direct.o
> direct.cc: In function 'int init_directGauss(cov_model*, gen_storage*)':
> direct.cc:196:52: error: 'RU_sqrtPosDefFree' was not declared in this scope
>err = RU_sqrtPosDefFree(Cov, vdimtot, cov->Ssolve);
> ^
> /usr/lib/R/etc/Makeconf:139: recipe for target 'direct.o' failed
> make[1]: *** [direct.o] Error 1
> make[1]: Leaving directory '/build/r-cran-randomfields-3.1.36/src'
> make[1]: Entering directory '/build/r-cran-randomfields-3.1.36/src'
> make[1]: Leaving directory '/build/r-cran-randomfields-3.1.36/src'
> ERROR: compilation failed for package 'RandomFields'
>
>
> Do you have any idea what might be wrong here?
>
> Kind regards
>
>   Andreas.
>


-- 
Prof. Dr. Martin Schlather
Institut für Mathematik
Universität Mannheim
A5, 6, B 118
D-68131 Mannheim 

schlat...@math.uni-mannheim.de  
https://ms.math.uni-mannheim.de
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Processed: retitle 850599 to petsc: Missing depends on libhdf5-mpi-dev in -dev pkg

Processing commands for cont...@bugs.debian.org:

> retitle 850599 petsc: Missing depends on libhdf5-mpi-dev in -dev pkg
Bug #850599 {Done: Drew Parsons } [petsc] slepc: FTBFS: 
Unable to link with PETSc
Changed Bug title to 'petsc: Missing depends on libhdf5-mpi-dev in -dev pkg' 
from 'slepc: FTBFS: Unable to link with PETSc'.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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Processed: cloning 802706, notfound 802706 in 3.7.3+dfsg1-3, reassign -1 to petsc, closing -1 ...

Processing commands for cont...@bugs.debian.org:

> # splitting into two bugs so the BTS can track what is happening
> clone 802706 -1
Bug #802706 {Done: Drew Parsons } [src:slepc] slepc: 
FTBFS: Unable to link with PETSc
Bug 802706 cloned as bug 850599
> notfound 802706 3.7.3+dfsg1-3
Bug #802706 {Done: Drew Parsons } [src:slepc] slepc: 
FTBFS: Unable to link with PETSc
No longer marked as found in versions slepc/3.7.3+dfsg1-3.
> reassign -1 petsc 3.7.4+dfsg1-8
Bug #850599 {Done: Drew Parsons } [src:slepc] slepc: 
FTBFS: Unable to link with PETSc
Bug reassigned from package 'src:slepc' to 'petsc'.
No longer marked as found in versions slepc/3.7.3+dfsg1-3 and 
slepc/3.6.1.dfsg1-1.
No longer marked as fixed in versions petsc/3.7.4+dfsg1-9 and 
slepc/3.6.1.dfsg1-2.
Bug #850599 {Done: Drew Parsons } [petsc] slepc: FTBFS: 
Unable to link with PETSc
There is no source info for the package 'petsc' at version '3.7.4+dfsg1-8' with 
architecture ''
Unable to make a source version for version '3.7.4+dfsg1-8'
Marked as found in versions 3.7.4+dfsg1-8.
> close -1
Bug #850599 {Done: Drew Parsons } [petsc] slepc: FTBFS: 
Unable to link with PETSc
Bug 850599 is already marked as done; not doing anything.
> fixed -1 3.7.4+dfsg1-9
Bug #850599 {Done: Drew Parsons } [petsc] slepc: FTBFS: 
Unable to link with PETSc
There is no source info for the package 'petsc' at version '3.7.4+dfsg1-9' with 
architecture ''
Unable to make a source version for version '3.7.4+dfsg1-9'
Marked as fixed in versions 3.7.4+dfsg1-9.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#849152: marked as done (sagemath: FTBFS on i386: many tests fail)

Your message dated Sun, 08 Jan 2017 11:03:31 +
with message-id 
and subject line Bug#849152: fixed in sagemath 7.4-5
has caused the Debian Bug report #849152,
regarding sagemath: FTBFS on i386: many tests fail
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
849152: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=849152
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: sagemath
Version: 7.4-3
Severity: important
Justification: fails to build from source

The i386 build of sagemath failed with many test suite errors
(including some outright crashes), as detailed at

https://buildd.debian.org/status/fetch.php?pkg=sagemath=i386=7.4-3=1482425583

Could you please take a look?

Thanks!

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu
--- End Message ---
--- Begin Message ---
Source: sagemath
Source-Version: 7.4-5

We believe that the bug you reported is fixed in the latest version of
sagemath, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 849...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Tobias Hansen  (supplier of updated sagemath package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Sun, 08 Jan 2017 09:57:27 +0100
Source: sagemath
Binary: sagemath sagemath-common sagemath-jupyter sagemath-doc-hu 
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sagemath-doc-pt sagemath-doc-es sagemath-doc-de sagemath-doc-ja sagemath-doc-ru
Architecture: source
Version: 7.4-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Tobias Hansen 
Description:
 sagemath   - Open Source Mathematical Software
 sagemath-common - Open Source Mathematical Software - architecture-independent 
file
 sagemath-doc-ca - Open Source Mathematical Software - documentation (Catalan; 
Valen
 sagemath-doc-de - Open Source Mathematical Software - documentation (German)
 sagemath-doc-en - Open Source Mathematical Software - documentation (English)
 sagemath-doc-es - Open Source Mathematical Software - documentation (Spanish; 
Casti
 sagemath-doc-fr - Open Source Mathematical Software - documentation (French)
 sagemath-doc-hu - Open Source Mathematical Software - documentation (Hungarian)
 sagemath-doc-it - Open Source Mathematical Software - documentation (Italian)
 sagemath-doc-ja - Open Source Mathematical Software - documentation (Japanese)
 sagemath-doc-pt - Open Source Mathematical Software - documentation 
(Portuguese)
 sagemath-doc-ru - Open Source Mathematical Software - documentation (Russian)
 sagemath-doc-tr - Open Source Mathematical Software - documentation (Turkish)
 sagemath-jupyter - Open Source Mathematical Software - Jupyter kernel
Closes: 849152
Changes:
 sagemath (7.4-5) unstable; urgency=medium
 .
   [ Ximin Luo ]
   * Generate documentation reproducibly.
   * Set SYMPOW_CACHEDIR instead of HOME.
   * Depend on python-numpy (>= 1:1.12.0~rc2-1).
 .
   [ Tobias Hansen ]
   * Rebuild against brial 0.8.5-4. (Closes: #849152)
   * Remove sagetex from Build-Depends and sagemath:Depends,
 add to sagemath:Recommends.
   * Change u1-version-pbori-boost1.62-hashes.patch:
 Also update hashes for 32 bit.
Checksums-Sha1:
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 95cadbb4c2be0cfeaeb768b6cd33ece06c7edc5a 111364 sagemath_7.4-5.debian.tar.xz
Checksums-Sha256:
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sagemath_7.4-5.dsc
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sagemath_7.4-5.debian.tar.xz
Files:
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sagemath_7.4-5_source.changes ACCEPTED into unstable



Accepted:

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Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 09:57:27 +0100
Source: sagemath
Binary: sagemath sagemath-common sagemath-jupyter sagemath-doc-hu 
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Architecture: source
Version: 7.4-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Tobias Hansen 
Description:
 sagemath   - Open Source Mathematical Software
 sagemath-common - Open Source Mathematical Software - architecture-independent 
file
 sagemath-doc-ca - Open Source Mathematical Software - documentation (Catalan; 
Valen
 sagemath-doc-de - Open Source Mathematical Software - documentation (German)
 sagemath-doc-en - Open Source Mathematical Software - documentation (English)
 sagemath-doc-es - Open Source Mathematical Software - documentation (Spanish; 
Casti
 sagemath-doc-fr - Open Source Mathematical Software - documentation (French)
 sagemath-doc-hu - Open Source Mathematical Software - documentation (Hungarian)
 sagemath-doc-it - Open Source Mathematical Software - documentation (Italian)
 sagemath-doc-ja - Open Source Mathematical Software - documentation (Japanese)
 sagemath-doc-pt - Open Source Mathematical Software - documentation 
(Portuguese)
 sagemath-doc-ru - Open Source Mathematical Software - documentation (Russian)
 sagemath-doc-tr - Open Source Mathematical Software - documentation (Turkish)
 sagemath-jupyter - Open Source Mathematical Software - Jupyter kernel
Closes: 849152
Changes:
 sagemath (7.4-5) unstable; urgency=medium
 .
   [ Ximin Luo ]
   * Generate documentation reproducibly.
   * Set SYMPOW_CACHEDIR instead of HOME.
   * Depend on python-numpy (>= 1:1.12.0~rc2-1).
 .
   [ Tobias Hansen ]
   * Rebuild against brial 0.8.5-4. (Closes: #849152)
   * Remove sagetex from Build-Depends and sagemath:Depends,
 add to sagemath:Recommends.
   * Change u1-version-pbori-boost1.62-hashes.patch:
 Also update hashes for 32 bit.
Checksums-Sha1:
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Thank you for your contribution to Debian.

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Bug#850027: libfreeimage3: freeimage 3.17.0+ds1-4 makes rviz unusable

2017-01-08 Thread Ghislain Vaillant


On Thu, 5 Jan 2017 21:57:53 + James Cowgill  wrote:

Control: block 849696 by -1
Control: tags -1 patch

Hi,

This is of course the same bug as #849696 in OGRE, but I still think it
should be fixed in freeimage.

I'd like to propose this patch (a new version of
Disable-vendored-dependencies.patch is also attached):

https://anonscm.debian.org/cgit/users/jcowgill/freeimage.git/commit/?h=bug-850027=b5f51dbe600e475a6bfc8e0f52335136b57ca123

My patch reverts the one applied in #841089 which broke the API, and
instead of removing the G3 plugin, it includes a G3 plugin which does
nothing (trying to load a G3 file will always fail). The advantage of
this is that the API is identical to upstream and it should also fix
the issue in #841089 as well.


I like this. I'll roll an update in the next few days.

Thanks to everyone who were involved.

Ghis

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r-cran-randomfieldsutils_0.3.15-1_amd64.changes ACCEPTED into unstable



Accepted:

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Hash: SHA256

Format: 1.8
Date: Sun, 08 Jan 2017 08:36:51 +0100
Source: r-cran-randomfieldsutils
Binary: r-cran-randomfieldsutils
Architecture: source amd64
Version: 0.3.15-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Andreas Tille 
Description:
 r-cran-randomfieldsutils - utilities for the simulation and analysis of random 
fields
Changes:
 r-cran-randomfieldsutils (0.3.15-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper 10
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r-cran-randomfieldsutils_0.3.15-1.dsc
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r-cran-randomfieldsutils_0.3.15-1.debian.tar.xz
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r-cran-randomfieldsutils_0.3.15-1_amd64.buildinfo
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Thank you for your contribution to Debian.

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r-cran-pwt8_8.1.1-1_amd64.changes ACCEPTED into unstable



Accepted:

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Format: 1.8
Date: Sun, 08 Jan 2017 08:53:16 +0100
Source: r-cran-pwt8
Binary: r-cran-pwt8
Architecture: source all
Version: 8.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Andreas Tille 
Description:
 r-cran-pwt8 - GNU R package for the Penn World Tables (version 8)
Changes:
 r-cran-pwt8 (8.1.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * cme fix dpkg-control
   * Convert to dh-r
   * debhelper 10
   * d/watch: version=4
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r-cran-sp_1.2-4-1_amd64.changes ACCEPTED into unstable



Accepted:

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Date: Fri, 06 Jan 2017 23:15:23 +0100
Source: r-cran-sp
Binary: r-cran-sp
Architecture: source amd64
Version: 1:1.2-4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Andreas Tille 
Description:
 r-cran-sp  - GNU R classes and methods for spatial data
Changes:
 r-cran-sp (1:1.2-4-1) unstable; urgency=medium
 .
   * New upstream version
   * test depends from r-cran-rgeos
   * debhelper 10
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Thank you for your contribution to Debian.

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brial_0.8.5-4_amd64.changes ACCEPTED into unstable



Accepted:

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Format: 1.8
Date: Sat, 07 Jan 2017 10:18:15 +0100
Source: brial
Binary: python-brial python-polybori libbrial-dev libbrial0 libbrial0-dbg 
libbrial-groebner-dev libbrial-groebner0 libbrial-groebner0-dbg
Architecture: source amd64 all
Version: 0.8.5-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Tobias Hansen 
Description:
 libbrial-dev - polynomials over Boolean Rings, core development files
 libbrial-groebner-dev - development files for libbrial-groebner
 libbrial-groebner0 - computer algebra routines of BRiAl
 libbrial-groebner0-dbg - debug symbols for libbrial-groebner0
 libbrial0  - polynomials over Boolean Rings, shared library
 libbrial0-dbg - debug symbols for libbrial0
 python-brial - polynomials over Boolean Rings, Python module
 python-polybori - transitional package
Changes:
 brial (0.8.5-4) unstable; urgency=medium
 .
   * Add fix_ftbfs_gcc-6.patch:
 Upstream patch to fix FTBFS with gcc 6.
   * Remove -std=c++98 flag, obsolete with new patch.
   * Change fix-testsuite.patch: Do not set CXXFLAGS=-std=c++98.
   * Disable the test suite (it is not supported by upstream and
 modifies files that are going to be installed).
   * Add Breaks: sagemath (<= 7.4-4) to ensure brial and a rebuilt
 sagemath migrate to testing together.
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Processing of r-cran-pwt8_8.1.1-1_amd64.changes

r-cran-pwt8_8.1.1-1_amd64.changes uploaded successfully to localhost
along with the files:
  r-cran-pwt8_8.1.1-1.dsc
  r-cran-pwt8_8.1.1.orig.tar.gz
  r-cran-pwt8_8.1.1-1.debian.tar.xz
  r-cran-pwt8_8.1.1-1_all.deb
  r-cran-pwt8_8.1.1-1_amd64.buildinfo

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New upstream version of RandomFields 3.1.36 fails to build from source