Bug#962786: Are you still working on pcpp?
Hi Just checking again. Do you mind if I upload python3-pcpp? Thanks Alastair On 01/02/2024 14:55, Alastair McKinstry wrote: Hi, I need pcpp for my own package "loki-ecmwf". I have it ready to upload if you have no interest anymore. Best regards Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie
Bug#1063532: ITP: ford -- Fortran Documentation tool
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: ford Version : 7.0.5 Upstream Contact: Christopher MacMackin * URL : https://github.com/Fortran-FOSS-Programmers/ford * License : GPL Programming Lang: Python Description : Fortran Documentation tool The goal of FORD is to be able to reliably produce documentation for modern Fortran software which is informative and nice to look at. The documentation should be easy to write and non-obtrusive within the code. While it will never be as feature-rich as Doxygen, hopefully FORD will be able to provide a good alternative for documenting Fortran projects. Ford is already used (if present) by several projects packaged in Debian. I intend to manage it in Salsa; perhaps in Debian-Science team.
Bug#1063521: ITP: pymbolic -- Easy Expression Trees and Term Rewriting library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-pyt...@lists.debian.org * Package name: pymbolic Version : 2022.2 Upstream Contact: Andreas Klöckner * URL : https://github.com/inducer/pymbolic * License : MIT/X Programming Lang: Python Description : Easy Expression Trees and Term Rewriting library I am packaging this as Pymbolic is a small expression tree and symbolic manipulation library. Two things set it apart from other libraries of its kind: * Users can easily write their own symbolic operations, simply by deriving from the builtin visitor classes. * Users can easily add their own symbolic entities to do calculations with. Pymbolic currently understands regular arithmetic expressions, derivatives, sparse polynomials, fractions, term substitution, expansion. It automatically performs constant folding, and it can compile its expressions into Python bytecode for fast(er) execution. It is not expected to be a replacement for Sympy, which is more complex.
Bug#1063520: ITP: codetiming -- A Timer package for Python code
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: codetiming Version : 1.4.0 Upstream Contact: David Beazley * URL : https://pypi.python.org/pypi/codetiming * License : MIT Programming Lang: Python Description : A Timer package for Python code This is a dependency of loki-ecmwf, already submitted. It is a simple timer class for Python.
Bug#962786: Are you still working on pcpp?
Hi, I need pcpp for my own package "loki-ecmwf". I have it ready to upload if you have no interest anymore. Best regards Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie
Bug#1061367: ITP: loki-ecmwf -- Source-to-source code translator for Fortran
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: loki-ecmwf Version : 0.1.6 Upstream Contact: Michael Lange (michael.la...@ecmwf.int) * URL : https://github.com/ecmwf-ifs/loki * License : Apache-2 Programming Lang: Python Description : Source-to-source code translator for Fortran Loki is an experimental tool to explore the possible use of source-to-source translation for ECMWF's Integrated Forecasting System (IFS) and associated Fortran software packages. Loki is based on compiler technology (visitor patterns and ASTs) and aims to provide an abstract, language-agnostic representation of a kernel, as well as a programmable (pythonic) interface that allows developers to experiment with different kernel implementations and optimizations. The aim is to allow changes to programming models and coding styles to be encoded and automated instead of hand-applying them, enabling advanced experimentation with large kernels as well as bulk processing of large numbers of source files to evaluate different kernel implementations and programming models. This software is now in use beyond ECMWF, and I intend to work and develop it with other Fortran environments in Debian. I intend to maintain it within Debian Science team as part of the Meteorology stack. As Loki is a pre-existing name in Debian, I intend to follow convention and rename the package loki-ecmwf.
Bug#1057266: ITP: lfortran -- Fortran compiler
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: lfortran Version : 0.29.0 Upstream Contact: @lfortranorg * URL : https://www.lfortran.org/ * License : Apache Programming Lang: C++ Description : Interactive Fortran compiler LFortran is a modern open-source (BSD licensed) interactive Fortran compiler built on top of LLVM. It can execute user’s code interactively to allow exploratory work (much like Python, MATLAB or Julia) as well as compile to binaries with the goal to run user’s code on modern architectures such as multi-core CPUs and GPUs. This is currently the most mature Fortran compiler on LLVM.
Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit
On 21/11/2022 11:28, Drew Parsons wrote: On 2022-11-21 10:10, Alastair McKinstry wrote: Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name : fiat Version : 1.0.0 Upstream Author : ECMWF * URL : https://github.com/ecmwf-ifs/fiat * License : Apache Programming Lang: C, Fortran Description : Fortran IFS and Arpege Toolkit FIAT is a collection of selected Fortran utility libraries, extracted from the IFS/Arpege model used at ECMWF. It provides: drhook : tracing gstats : timing parkind : choose precision mpl : MPI communication mpi_serial: MPI dummy symbols compiled into static library other various routines . ECMWF is the European Centre for Medium-Range Weather Forecasts. FIAT is a new dependency of the atlas-ecmwf library already in Debian, as ECMWF is open-sourcing its stack. Hi Alastair, note that namespace FIAT is occupied by the python package python3-fiat (src:fiat), used by python3-ffc and related FEniCS/Dolfin packages (python3-dolfin etc). We could consider moving FEniCS FIAT to src:fenics-fiat, but perhaps that is administrative overkill. On the other hand I did do that for other FEniCS components for the next generation fenicsx. I didn't change the source package name for components of old fenics on the grounds that they are in a sense deprecated and could be removed in the future. Removal would be in the far future though, since some groups are still using old fenics for calculations. To complicate the point further, while the new fenicsx library no longer uses FEniCS FIAT, it is being developed further by the firedrake project at https://github.com/firedrakeproject/fiat (Debian has not packaged firedrake itself yet). Alternatively your FIAT could be src:ecmwf-fiat. Which naming solution looks best for you? Drew Hi Drew Thanks. I hadn't spotted that with "apt-cache search fiat" missing src:fiat. My preference is for "fiat-ecmwf", as there is a consistency with "atlas-ecmwf" and "silo-llnl" Best regards Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry
Bug#1024552: ITP: ectrans -- Spherical Harmonics Transforms library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: ectrans Version : 1.1.0 Upstream Author : ECMWF * URL : https://github.com/ecmwf-ifs/trans * License : Apache Programming Lang: C,C++, Fortran Description : Spherical Harmonics Transforms library ecTrans is the global spherical Harmonics transforms library, extracted from the IFS weather model from ECMWF. It uses a hybrid of MPI and OpenMP parallelisation strategies. The package contains both single- and double precision Fortran libraries (trans_sp, trans_dp), as well as a C interface to the double-precision version (transi_dp) ECMWF is the European Centre for Medium-Range Weather Forecasts. ecTrans is a new dependency of the ECMWF atlas-ecmwf library already present in Debian, as ECMWF open-source their stack.
Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: fiat Version : 1.0.0 Upstream Author : ECMWF * URL : https://github.com/ecmwf-ifs/fiat * License : Apache Programming Lang: C, Fortran Description : Fortran IFS and Arpege Toolkit FIAT is a collection of selected Fortran utility libraries, extracted from the IFS/Arpege model used at ECMWF. It provides: drhook : tracing gstats : timing parkind : choose precision mpl : MPI communication mpi_serial: MPI dummy symbols compiled into static library other various routines . ECMWF is the European Centre for Medium-Range Weather Forecasts. FIAT is a new dependency of the atlas-ecmwf library already in Debian, as ECMWF is open-sourcing its stack.
Bug#980107: python-rioxarray
Hi Antonio and Magnus Thanks, I've uploaded this to the new queue. Best regards Alastair On 25/04/2022 16:20, Magnus HAGDORN wrote: Hi Antonio, thanks for updating the package. I have built and uploaded the package to debian mentors: https://mentors.debian.net/package/python-rioxarray/ but we will need a sponsor to upload the package to the new queue. Regards magnus On Sat, 2022-04-23 at 16:20 +0200, Antonio Valentino wrote: This email was sent to you by someone outside the University. You should only click on links or attachments if you are certain that the email is genuine and the content is safe. Dear Magnus and Alastair, I have recently pushed to the salsa repository a new upstream version of the rioxarray package (v0.11.1). I would really like to have this package in debian. If you are still interested in this package please go ahead with the upload into the new queue. I you are no longer interested or do not have time to dedicate, please let me know and I will try to find another sponsor for the first upload. Of course I will take in charge also the maintenance. kind regards antonio On Fri, 5 Nov 2021 07:44:10 +0100 Antonio Valentino wrote: Dear Alastair and Magnus, yesterday I have pushed on the salsa repository an updated version of the rioxarray package including the latest upstream version 0.8.0. Please consider it for your review and upload. kind regards antonio Il 02/10/21 17:08, Antonio Valentino ha scritto: Thank Magnus, all branches and tags have been pushed now. Now the package is ready for a review. kind regards antonio Il 02/10/21 16:34, Magnus HAGDORN ha scritto: Hi Antionio, Excellent. I am very happy for you to push directly to the repo. magnus On Sat, 2021-10-02 at 09:48 +0200, Antonio Valentino wrote: This email was sent to you by someone outside the University. You should only click on links or attachments if you are certain that the email is genuine and the content is safe. Dear Alastair and Magnus, I have update the package on my fork [1]. I have temporary removed the -doc package because it not buildable at the moment due to #995299 [2]. We can re-add the -doc package in a future version if necessary. I have also updated the package to the latest upstream version 0.7.1. @Magnus please let me know if you prefer me to push directly on the debian-science repository or to submit a merge request. [1] https://salsa.debian.org/antonio.valentino/python-rioxarray [2] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=995299 kind regards Antonio Il 27/09/21 11:59, Alastair McKinstry ha scritto: Hi Magnus I downloaded and reviewed the package. As it currently stands it needs some work to deal with privacy issues (The lintian tests). Basically sphinxdocs is adding links to cloudflare etc that leak user information. You can look at "python-xarray" to see some solutions - some can be fixed with a patch to the sphinxdocs configuration, some needs editing of the html files in debian/rules to use javascript helpers that you -- Antonio Valentino The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th’ ann an Oilthigh Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336. -- Alastair McKinstry, mckins...@debian.org matrix: @sceal.ie:mckinstry GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
Bug#995441: ITP: pyodc -- A Python interface to `odc` for encoding/decoding ODB-2 files
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: pyodc Version : 1.1.0 Upstream Author : European Centre for Medium-range Forecasts (ECMWF) * URL : https://github.com/ecmwf/pyodc * License : Apache-2 Programming Lang: Python Description : A Python interface to `odc` for encoding/decoding ODB-2 files This is a Python interface to ODC, a package already in Debian, for handling ODB-2 (weather observation) files. I will maintain this within the Debian Science team, alongside its sister packages for GRIB and BUFR formats
Bug#995293: ITP: cylc-flow -- rename of upstream source - splitting package
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: cylc-flow Version : 8.0 Upstream Author : NIWA * URL : http://cylc.github.io/cylc * License : GPL-3 Programming Lang: Python Description : rename of upstream source - splitting package This is a workflow manager used in the weather and climate community. Cylc 7.0+ is already in Debian, but is being split into several upstream componets - cylc-ui, cylc-uiserver and cylc-flow. cylc-flow is a binary package in the current cylc. I intend to replace cylc source package with cylc-flow and add the cylc-ui* source packages.
Bug#994756: ITP: findlibs -- Trivial python package to find C libraries
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: findlibs Version : 0.0.2 Upstream Author : ECMWF (The European Centre for Medium-Range Weather Forecasts) * URL : https://github.com/ecmwf/findlibs * License : Apache-2 Programming Lang: Python Description : Trivial python package to find C libraries This is a trivial package used to find C libraries. I'm packaging it as it is now a dependency of the ECMWF stack for meteorology libraries (eecodees-python, etc) and hence cfgrib and xarray. I intend to maintain within Debian Science teams.
Bug#993581: ITP: ecmwflibs -- A Python package that wraps some of ECMWF libraries to be used by Python interfaces to ECMWF software.
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: ecmwflibs Version : 0.13.3 Upstream Author : European Centre for Medium-Range Forecasts * URL : https://github.com/ecmwf/ecmwflibs * License : Apache 2.0 Programming Lang: Python Description : A Python package that wraps some of ECMWF libraries to be used by Python interfaces to ECMWF software. A Python package that wraps some of ECMWF libraries to be used by Python interfaces to ECMWF software. This is now a dependency of other ECMWF libraries (python3-eccodes, cfgrib) and hence xarray and other python code. I intend to manage this within the Science Team and it is on Salsa already.
Bug#992999: ITP: unyt -- Python package for handling numpy arrays with units.
It would be good to clarify. There is another package I maintain in Debian, udunits, thats a C library but also provides a "canonical" units database. It would be good not to duplicate (reuse libudunits-data in unyt etc ?) On 26/08/2021 10:51, Ole Streicher wrote: On 26.08.21 11:36, Alastair McKinstry wrote: How does this interact with xarray, etc? I don't know; the reason to package it is that it is a new requirement of the "yt" package. It was first developed within yt, and then separated. There is another attempt to use units in the "astropy" package; as far as I know they are not compatible. A quick search however brings up https://github.com/pydata/xarray/issues/525 with some long-lasting, unresolved discussion of the situation. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#992999: ITP: unyt -- Python package for handling numpy arrays with units.
How does this interact with xarray, etc? On 26/08/2021 07:42, Ole Streicher wrote: Package: wnpp Severity: wishlist Owner: Ole Streicher X-Debbugs-Cc: debian-de...@lists.debian.org, debian-pyt...@lists.debian.org, debian-as...@lists.debian.org, debian-scie...@lists.debian.org * Package name : unyt Version : 2.8.0 Upstream Author : Nathan Goldbaum * URL : debian-de...@lists.debian.org * License : BSD-3-Clause Programming Lang: Python Description : Pyton package for handling numpy arrays with units. Often writing code that deals with data that has units can be confusing. A function might return an array but at least with plain NumPy arrays, there is no way to easily tell what the units of the data are without somehow knowing a priori. The unyt package (pronounced like “unit”) provides a subclass of NumPy’s ndarray class that knows about units. It is a new build dependency of the "yt" package. I will maintain it within the Debian Python team. Salsa dir is https://salsa.debian.org/python-team/packages/unyt Best regards Ole -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-6847928 Green Party Councillor, Galway County Council
Bug#980463: ITP: scil -- Scientific Compression Library (SCIL)
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: scil Version : 0.1 Upstream Author : Julian Kunkel * URL : https://github.com/JulianKunkel/scil * License : LGPL-3 Programming Lang: C Description : Scientific Compression Library (SCIL) The Scientific Compression Library (SCIL) is a meta-compressor that allows users to set various quantities that define the acceptable error and the expected performance behavior. The library aims to choose the appropriate chain of algorithms to yield the users requirements (this feature is still under development). This approach is a crucial step towards a scientifically safe use of much-needed lossy data compression, because it disentangles the tasks of determining scientific ground characteristics of tolerable noise, from the task of determining an optimal compression strategy given target noise levels and constraints. Future algorithms are used without change in the application code, once they are integrated into SCIL. SCIL also comes with a pattern library to generate various relevant synthetic test patterns. Further tools are provided to plot, add noise or to compress CSV and NetCDF3 files. Internally, support functions simplify the development of new algorithms and the testing. This is then an optional dependency of ESDM, also being packaged.
Bug#980113: ITP: fpzip -- Floating Point array compression library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: fpzip Version : 1.3.0 Upstream Author : LLNL * URL : https://computing.llnl.gov/projects/fpzip * License : BSD Programming Lang: C Description : Floating Point array compression library fpzip is a library and command-line utility for lossless and optionally lossy compression of 2D and 3D floating-point arrays. fpzip assumes spatially correlated scalar-valued data, such as regularly sampled continuous functions, and is not suitable for compressing unstructured streams of floating-point numbers. In lossy mode, fpzip discards some number of least significant mantissa bits and losslessly compresses the result. fpzip currently supports IEEE-754 single (32-bit) and double (64-bit) precision floating-point data. fpzip is written in C++ but has a C compatible API that can be called from C and other languages. It conforms to the C++98 and C89 language standards. fpzip is released as Open Source under a three-clause BSD license. This is a dependency of other packages - A scientific compression library that is an extension for NetCDF/HDF5, amongst others.
Bug#980107: ITP: python-rioxarray -- rasterio xarray extension
Hi I can also sponsor you on this Alastair On 14/01/2021 15:22, Magnus Hagdorn wrote: Package: wnpp Severity: wishlist Owner: Magnus Hagdorn * Package name: python-rioxarray Version : 0.1.1 Upstream Author : Alan Snow * URL : https://github.com/corteva/rioxarray * License : Apache Programming Lang: python Description : rasterio xarray extension rioxarray is an extension to the xarray package that - supports multidimensional datasets such as netCDF - stores the CRS as a WKT, which is the recommended format - loads in the CRS, transform, and nodata metadata in standard CF & GDAL locations - supports masking and scaling data with the masked and mask_and_scale kwargs - adds the coordinate axis CF metadata - loads in raster metadata into the attributes This package is a dependency of geocube. I am happy to maintain it but will need a sponsor. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#980091: ITP: geocube -- Tool to convert geopandas vector data into rasterized xarray data.
Hi Magnus I'm happy to sponsor you. I'm one of the python-xarray maintainers. Alastair mckins...@debian.org On 14/01/2021, 10:18, "Magnus Hagdorn" wrote: Package: wnpp Severity: wishlist Owner: Magnus Hagdorn * Package name: geocube Version : 0.0.15 Upstream Author : Alan Snow * URL : https://github.com/corteva/geocube * License : BSD Programming Lang: Python Description : Tool to convert geopandas vector data into rasterized xarray data. Geocube is a tool to convert geopandas vector data into rasterized xarray data. It combines the interfaces of: * geopandas * xarray * rioxarray and is powered by GDAL using: * rasterio * fiona * datacube Happy to maintain this package but will need a sponsor.
Bug#973615: ITP: odc -- Package to read ODB (Observation Database at ECMWF) data
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: odc Version : 1.1.0 Upstream Author : European Centre for Medium-Range Forecasts (ECMWF) i...@ecmwf.int * URL : https://github.com/ecmwf/odc * License : Apache-2 Programming Lang: C++ Description : Package to read ODB (Observation Database at ECMWF) data ODC is a tool and library to access the ODB Observation Database at ECMWF. ECMWF is the European Centre for Medium-Range Forecasts. ODC and other packages (Metkit, FDB) refactor and replace the ODB-API package already present in Debian. It will be used by Metview and other tools.
Bug#972873: ITP: fdb -- FDB (Fields DataBase) is a domain-specific object store for storing, indexing and retrieving GRIB data.
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: fdb Version : 5.7.0 Upstream Author : ECMWF (European Centre for Medium-Range Weather Forecasts) * URL : http://github.com/ecmwf/fdb * License : Apache 2 Programming Lang: C++ Description : FDB (Fields DataBase) is a domain-specific object store for storing, indexing and retrieving GRIB data. FDB (Fields DataBase) is a domain-specific object store developed at ECMWF for storing, indexing and retrieving GRIB data. Each GRIB message is stored as a field and indexed trough semantic metadata (i.e. physical variables such as temperature, pressure, ...). A set of fields can be retrieved specifying a request using a specific language developed for accessing MARS_ Archive FDB exposes a C++ API as well as CLI tools_. This is to be used by the rest of the ECMWF (European Centre for Medium-Range Weather Forecasts) stack currently on Debian - Metview, etc.
Bug#972624: ITP: metkit -- Meterological tookit implementing the MARS language
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: metkit Version : 1.6.0 Upstream Author : European Centre for Medium-Range Weather Forecasts * URL : http://github.com/ecmwf/metkit * License : Apache-2 Programming Lang: C++, Fortran Description : Meterological tookit implementing the MARS language MetKit is a toolkit from ECMWF for manipulating and describing meteorological objects, implementing the MARS language and associated processing and semantics. MARS is the Meteorological Archive Retrieval System from ECMWF. libmetkit and its functionality are currently provided by the older "ODB-API" package in Debian, but this is being withdrawn and the metkit library (used optionally by other tools, eg Metview, in Debian) is being packaged separately.
Bug#969088: ITP: esdm -- Earth System Data Middleware for earth system simulation
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: esdm Version : 0.1.0 Upstream Author : Julian Kunkel * URL : https://github.com/ESiWACE/esdm * License : GPL Programming Lang: C Description : Earth System Data Middleware for earth system simulation The middleware for earth system data is a prototype to improve I/O performance for earth system simulation as used in climate and weather applications. ESDM exploits structural information exposed by workflows, applications as well as data description formats such as HDF5 and NetCDF to more efficiently organize metadata and data across a variety of storage backends. It is planned to maintain this within the Debian Science team; it is a growing piece of "expected functionality" on systems running climate models.
Bug#962189: ITP: ucx -- A high performance communication library for HPC, AI, Data analytics, and beyond
Hi, I've been told UCX is now the default, for openmpi 4.0* See: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962180 Is there some performance work to point to ? Regards Alastair On 11/06/2020 10:14, Brice Goglin wrote: > Hello > > You say "It is expected to use UCX as the transport layer under openmpi > and mpich". It is actually optional, OpenMPI works fine without UCX on > non-Mellanox networks. Worse, UCX says it supports some networks such as > OPA while its actual performance is very bad, people have to uninstall > UCX in such cases, or reduce its component priority. Do you plan to make > a hard dependency from OMPI to UCX? > > Brice > > > Le 04/06/2020 à 12:38, Alastair McKinstry a écrit : >> Package: wnpp >> Severity: wishlist >> Owner: Alastair McKinstry >> >> * Package name: ucx >> Version : 1.8.0 >> Upstream Author : Mellanox Ltd. >> * URL : https://openucx.github.io/ucx/index >> * License : BSD >> Programming Lang: C >> Description : A high performance communication library for HPC, AI, >> Data analytics, and beyond >> >> Unified Communication X (UCX) provides an optimized communication layer for >> Message Passing (MPI), PGAS/OpenSHMEM libraries and RPC/data-centric >> applications. >> . >> UCX utilizes high-speed networks for inter-node communication, >> and shared memory mechanisms for efficient intra-node communication. >> . >> It is expected to use UCX as the transport layer under openmpi and mpich >> (already in Debian). >> . >> It will be maintained within the Debian Science team. >> -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#962189: ITP: ucx -- A high performance communication library for HPC, AI, Data analytics, and beyond
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: ucx Version : 1.8.0 Upstream Author : Mellanox Ltd. * URL : https://openucx.github.io/ucx/index * License : BSD Programming Lang: C Description : A high performance communication library for HPC, AI, Data analytics, and beyond Unified Communication X (UCX) provides an optimized communication layer for Message Passing (MPI), PGAS/OpenSHMEM libraries and RPC/data-centric applications. . UCX utilizes high-speed networks for inter-node communication, and shared memory mechanisms for efficient intra-node communication. . It is expected to use UCX as the transport layer under openmpi and mpich (already in Debian). . It will be maintained within the Debian Science team.
Bug#961669: ITP: gftl-shared -- Common gFTL containers for Fortran intrinsic types
Hi Ole Definitely willing to help. Best regards Alastair On 27/05/2020 16:45, Ole Streicher wrote: > Package: wnpp > Severity: wishlist > Owner: Ole Streicher > X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org > Control: block 961667 by -1 > Control: block 961668 by -1 > > * Package name: gftl-shared > Version : 0.9.5 > Upstream Author : Tom Clune > * URL : https://github.com/Goddard-Fortran-Ecosystem/ > * License : Apache > Language: Fortran 90 > Description : Common gFTL containers for Fortran intrinsic types > > This is a dependency of pfunit. The package will be maintained in > the DebianScience Team, the repository is > > https://salsa.debian.org/science-team/gftl-shared > > This is Fortran 90, where I am quite unexperienced. I'd appreciate if > someone could have a look on how to organize the package structure > (modules? libs?) and give me hints. > > Best regards > > Ole > -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#954068: ITP: metview-python -- Python(3) wrapper to the Metview package
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: metview-python Version : 1.1.2 Upstream Author : European Centre for Medium-Range Weather Forecasts (ECMWF) * URL : https://github.com/ecmwf/metview-python * License : Apache-2 Programming Lang: Python, C Description : Python(3) wrapper to the Metview package This is a Python interface to the Metview Meteorological Visualisation package. Metview is already part of Debian.
Bug#951586: ITP: isodatetime -- Python ISO 8601 date time parser and data model/manipulation utilities
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: isodatetime Version : 2.0.1 Upstream Author : Oliver Sanders * URL : https://github.com/metomi/isodatetime * License : LGPL 3.0 Programming Lang: Python Description : Python ISO 8601 date time parser and data model/manipulation utilities This is a dependency of the latest version of 'cylc', already in Debian. Python ISO8601 (2004) full-specification parser and data model/manipulation utilities. Intended to be used in a similar way to Python's datetime module. ISO8601 (2004) is an international standard for writing down date/time information. It is the correct, internationally-friendly, computer-sortable way to numerically represent date/time information. I intend to maintain this with the Python packaging team.
Bug#942635: ITP: atlas-ecmwf -- A library for numerical weather prediction and climate modelling
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: atlas-ecmwf Version : 0.19.0 Upstream Author : Willem Deconinck (willem.deconi...@ecmwf.int) * URL : https://github.com/ecmwf/atlas * License : Apache2 Programming Lang: C++, Fortran, Python Description : A library for numerical weather prediction and climate modelling Atlas is a ECMWF library for parallel data-structures supporting unstructured grids and function spaces, with the aim to investigate alternative more scalable dynamical core options for Earth System models, and to support modern interpolation and product generation software Atlas is predominantly C++ code, with main features available to Fortran codes through a F2003 interface. This is a recommended dependency of ECMWF code already present in Debian (metview, etc). It will use the gridtools_storage and fckit libraries (being packaged seperately)
Bug#941087: ITP: ansimarkup -- Produce colored terminal text with an xml-like markup
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: ansimarkup Version : 1.4.0 Upstream Author : Georgi Valkov * URL : https://github.com/gvalkov/python-ansimarkup * License : BSD-3-Clause Programming Lang: Python3 Description : Produce colored terminal text with an xml-like markup This is a python3 module to produce colored terminal texty with an XML-like markup. This is a dependency of the latest version of 'cylc', already in Debian.
Bug#935785: ITP: eckit -- C++ toolkit for ECMWF tools and Applications
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: eckit Version : 1.1.1 Upstream Author : European Centre for Medium-Range Forecasts * URL : http://github.com/ecmwf/eckit * License : Apache 2 Programming Lang: C++ Description : C++ toolkit for ECMWF tools and Applications ecKit is a cross-platform c++ toolkit that supports development of tools and applications at ECMWF. It is based on code developed over the last 20 years within the MARS software and was re-factored out to be reused by other applications. It provides a an abstraction layer on top of the operating system, so it is easier to port code to new architectures. It is developed taking into account the robustness requirements of running production systems at ECMWF. The main focus is UNIX/POSIX systems, and it has been thoroughly tested on AIX, Linux and Mac OSX. Historically, the code base pre-dates and in some way can be seen as a leaner substitute for some 'Boost' libraries. It features facilities to easily handle, in a cross-platform way: multi-threading json and yaml parsing object serialization and persistence configuration of user options and resources file-system abstraction regular expressions socket networking http protocol type-to-type conversions asynchronous IO asynchronous processing exception handling and stack dumping MPI object-oriented wrapper linear algebra abstraction with multiple backends (BLAS, MKL, Armadillo, Eigen3) advanced container classes space partition trees file-mapped arrays libeckit is currently already used in several ECMWF packages on Debian (metview, odb-api) and provided in odb-api. This will refactor it out as a shared library.
Bug#935264: ITP: gridtools -- Framework for working on weather and climate grids
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: gridtools Version : 1.0.2 Upstream Author : ETH Zurich * URL : https://eth-cscs.github.io/gridtools/ * License : BSD-3-Clause Programming Lang: C++ Description : Framework for working on weather and climate grids The GridTools (GT) framework is a set of libraries and utilities to develop performance portable applications in which stencil operations on grids are central. The focus of the project is on regular and block-structured grids as are commonly found in the weather and climate application field. GridTools provides optimized backends for GPUs and manycore architectures. Stencils can be run efficiently on different architectures without any code change needed. Stencils can be built up by small composeable units called stages, using GridTools domain-specific language. . GridTools is used within the COSMO model and is used by the ECMWF software already present on Debian. . I intend to package this and maintain within the Debian Science team.
Bug#934365: ITP: fckit -- Fortran toolkit for interoperating Fortran with C/C++
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: fckit Version : 0.6.3 Upstream Author : European Centre for Medium-Range Forecasts (ECMWF) * URL : https://github.com/ecmwf/fckit * License : Apache Programming Lang: Fortran, C++ Description : Fortran toolkit for interoperating Fortran with C/C++ This is a library from ECMWF for interoperating C/C++ with Fortran. It also includes wrappers for useful methods within the ecKit library from ECMWF (available seperately in the odb-api package) for eg. MPI and logging. This is a depedency of other ECMWF software such as Metview
Bug#933965: ITP: ecbuild -- ECMWF build system based on CMake
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: ecbuild Version : 3.0.3 Upstream Author : ECMWF * URL : https://github.com/ecmwf/ecbuild * License : Apache Programming Lang: CMake Description : ECMWF build system based on CMake ecBuild is a build system based on CMake macros that are used as a build system for ECMWF software. ECMWF is the European Centre for Medium-Range Weather Forecasts. It is a Build-dependency of other ECMWF software being packaged.
Bug#933780: ITP: eccodes-python -- Python 3 interface to encode and decode GRIB and BUFR files via the ECMWF ecCodes library.
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: eccodes-python Version : 0.9.2 Upstream Author : Shahram Najm * URL : https://github.com/ecmwf/eccodes-python * License : Apache Programming Lang: Python Description : Python 3 interface to encode and decode GRIB and BUFR files via the ECMWF ecCodes library. This is the Python interface to the eccodes library. It reads and writes GRIB 1 and 2 files, and reads and writes BUFR 3 and 4 files. . This uses the eccodes library already in Debian. Previous eccodes versions shipped a Python library (using SWIG); it is now split out using a CFFI interface as a separate package.
Bug#919654: ITP: xygrib -- Grib file reader and Meteorological visualisation
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: xygrib Version : 1.2.2 Upstream Author : OpenGribs (https://github.com/opengribs) * URL : https://opengribs.org/en/xygrib * License : GPLv3 Programming Lang: C++ Description : Grib file reader and Meteorological visualisation XyGrib is a Grib file reader and visualizes meteorological data providing an off-line capability to analyse weather forecasts or hindcasts. The XyGrib software is released as open source under the GPLv3 License. It is intended to be used as a capable weather work station for anyone with a serious interest in examining weather. This would include members of the sailing community, private and sport aviators, farmers, weather buffs and many more. XyGrib is the continuation of the zyGrib software package with a new team of volunteers. I am currently the maintainer of zyGrib (which is now dead upstream) and intend to replace zyGrib with XyGrib.
Bug#395573: RFP: visit -- interactive parallel visualization and graphical analysis tool
Hi, Sorry about the delay in repsonding. I'm not currently actively working on visit; (I did some checks this week). You can see my current work at: https://salsa.debian.org/science-team/visit/tree/debian/master Basically, VisIt doesn't build against VTK6 or VTK7 as in Debian at the moment. I had been waiting on changes to VTK (There was a plan possibly to move to VTK8), but this has stalled; (See https://www.mail-archive.com/search?l=debian-scie...@lists.debian.org=subject:%22Re%5C%3A+Skip+VTK7+and+go+directly+VTK8%5C%3F+Was%5C%3A+Re%5C%3A+vtk6+and+vtk7%22=newest=1) It appears that work on VTK 7 / VTK8 has stalled due to lack of need for a new VTK8 from other users in Debian. If I get the time, I might investigate what needs to be done, but this is unlikely at the moment, Regards Alastair On 11/10/2018 11:22, Gürkan Myczko wrote: Hi Alastair, Are you still working on visit packaging for Debian? I'm very interested in the package. However I fail myself to get it built at all from source... Regards, -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#909463: ITP: flang -- Fortran compiler using the LLVM toolkit
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: flang Version : 7.0 Upstream Author : Steve Scalpone * URL : https://github.com/flang-compiler * License : BSD Programming Lang: C++, Fortran Description : Fortran compiler using the LLVM toolkit Flang is a Fortran compiler targeting LLVM. Flang is a Fortran language front-end designed for integration with LLVM and the LLVM optimizer. Flang+LLVM is a production-quality Fortran solution designed to be co-installed and is fully interoperable with Clang C++. Flang single-core and OpenMP performance is now on par with GNU Fortran; for certain applications up to 40% faster. Flang has implemented Fortran 2003 and has a near full implementation of OpenMP through version 4.5 targeting multicore CPUs. This will be maintained with the LLVM packaging team.
Bug#907405: ITP: cfgrib -- Python 3 module supporting the CF convention in GRIB files
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: cfgrib Version : 0.8.4.4 Upstream Author : ECMWF (European Centre for Medium-Range Weather Forecasts) * URL : https://github.com/ecmwf/cfgrib * License : Apache2 Programming Lang: Python Description : Python 3 module supporting the CF convention in GRIB files This module provides a Python3 interface to map GRIB files to the NetCDF Common Data Model following the CF (Climate and Forecast) Conventions. The high level API is designed to support a GRIB backend for xarray and it is inspired by NetCDF-python and h5netcdf. Low level access and decoding is performed via the ECMWF ecCodes library.
Bug#902976: ITP: netcdf-parallel -- Parallel build of NetCDF library
On 04/07/2018 14:45, Julien Cristau wrote: On 07/04/2018 12:37 PM, Alastair McKinstry wrote: This package is necessary because it is not possible currently to enable all functionality in any single build of NetCDF - use of Compression, etc. in netcdf-4 requires a serial build. It is hoped that upstream work will make this package unnecessary in the long term (post-Buster) Why does this require a separate source package though rather than a second build from the netcdf source with different options? Cheers, Julien Thats what I had planned but the NetCDF maintainer(s) feel the changes are too invasive. I'm working on resolving these issues (mostly requiring versioned symbols to be accepted by upstream) but the timescale would likely not see parallel NetCDF in buster in time, hence the (temporary) separate package. Regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#902976: ITP: netcdf-parallel -- Parallel build of NetCDF library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: netcdf-parallel Version : 4.6.1 Upstream Author : University Corporation for Atmospheric Research/Unidata * URL : https://github.com/Unidata/netcdf-c/releases * License : NetCDF (BSD-like) Programming Lang: C Description : Parallel build of NetCDF library This is a fork of the NetCDF library, already present in Debian. It will be identical except: * It will provide MPI, pnetcdf builds rather than serial * The library names will be libnetcdf_mpi, libnetcdf_pnetcdf, etc. (_mpi, _pnetcdf suffixes) * Versioned symbols will be used It is expected that only a few packages that prefer parallel NetCDF will be converted to use this package - most will continue with the original NetCDF package. It is planned to work with upstream to get versioned symbols accepted. This package is necessary because it is not possible currently to enable all functionality in any single build of NetCDF - use of Compression, etc. in netcdf-4 requires a serial build. It is hoped that upstream work will make this package unnecessary in the long term (post-Buster)
Bug#889130: Adopting cctools
Hi I'm willing to adopt cctools, if thats ok regards Alastair McKinstry -- Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org>, https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#888683: ITP: harp -- Data harmonization toolset for Earth Observation formats
Hi, Yes, will do so for other ITPs. Just to record, I hope to team-maintain this package with Debian Science (or as you mention Debian GIS; there is an overlap with EO / weather). I have uploaded to https://salsa.debian.org/science-team/harp.git HARP requires the CODA library, separately ITPd (https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=888576) best regards Alastair On 31/01/2018 10:58, Andreas Tille wrote: > Hi Alastair, > > thanks for this ITP as well. Please consider the same as I was asking you > for the other ITP. > > Kind regards > >Andreas. > > On Sun, Jan 28, 2018 at 04:26:35PM +, Alastair McKinstry wrote: >> Package: wnpp >> Severity: wishlist >> Owner: Alastair McKinstry <mckins...@debian.org> >> >> * Package name: harp >> Version : 1.1 >> Upstream Author : ST Corp, NL <h...@stcorp.nl> >> * URL : https://github.com/stcorp/harp >> * License : BSD >> Programming Lang: C, Python >> Description : Data harmonization toolset for Earth Observation formats >> >> HARP is a toolset for ingesting, processing and inter-comparing satellite or >> model data against correlative data. The toolset is composed of a set of >> command line tools, a C library of analysis functions, and import/export >> interfaces for Python, Matlab, and IDL. The main goal of HARP is to assist >> in the inter-comparison of data sets. By appropriatelty chaining calls to >> the HARP command line tools one can preprocess satellite, model, and/or >> correlative data such that two datasets that need to be compared end up >> having the same temporal/spatial grid, same data format/structure, and same >> physical unit. >> >> -- Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org>, https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered. signature.asc Description: OpenPGP digital signature
Bug#888683: ITP: harp -- Data harmonization toolset for Earth Observation formats
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: harp Version : 1.1 Upstream Author : ST Corp, NL <h...@stcorp.nl> * URL : https://github.com/stcorp/harp * License : BSD Programming Lang: C, Python Description : Data harmonization toolset for Earth Observation formats HARP is a toolset for ingesting, processing and inter-comparing satellite or model data against correlative data. The toolset is composed of a set of command line tools, a C library of analysis functions, and import/export interfaces for Python, Matlab, and IDL. The main goal of HARP is to assist in the inter-comparison of data sets. By appropriatelty chaining calls to the HARP command line tools one can preprocess satellite, model, and/or correlative data such that two datasets that need to be compared end up having the same temporal/spatial grid, same data format/structure, and same physical unit.
Bug#888576: ITP: coda -- Library for the Common Data Access framework for Earth science file formats
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: coda Version : 2.18.3 Upstream Author : CODA develpers, <c...@stcorp.nl> * URL : https://github.com/stcorp/coda/ * License : BSD Programming Lang: C, Fortran, Python Description : Library for the Common Data Access framework for Earth science file formats CODA is the Common Data Access framework that allows reading of scientific data from various data formats, including structured ascii, structured binary, XML, netCDF, CDF, HDF4, HDF5, GRIB, RINEX and SP3. It provides a single consistent hierarchical view on data independent of the underlying storage format. CODA is used as a core component in various ESA software among which the ESA Atmospheric Toolbox (BEAT) and the Broadview Radar Altimetry Toolbox (BRAT). The CODA software package comes with interfaces for C, Fortran, IDL, MATLAB, Python, and Java and several useful command-line tools.
Bug#884357: ITP: cf-python -- Python tool for handling Climate and Forecast (CF) conventions for reading and writing files
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: cf-python Version : 2.1.2 Upstream Author : David Hassell * URL : http://cfpython.bitbucket.io * License : MIT Programming Lang: Python Description : Python tool for handling Climate and Forecast (CF) conventions for reading and writing files The cf python package implements the CF data model for the reading, writing and processing of data and metadata. This builds on netCDF files, handling individual and Aggregations (CFA).
Bug#395573: Building VisIt for Debian
Hi Steffen, Sorry for taking so long to respond. Packaging VisIt was delayed waiting for 'the correct VTK' to be packaged for Debian. I also haven't had much time to pay attention to this; I still wish to see VisIt packaged as it is a dependency of CDAT which I'd like to see in Debian. Currently VTK6 is present which should work, with VTK8 being packaged for buster. What branch are you using ? my latest branch (debian/master) should be based off 2.12.3, and refers to python- instead of python3 until python3-vtk? is provided. It doesn't build yet, but I can work with you to get it working. Best regards Alastair On 06/09/2017 11:17, Steffen Grunewald wrote: Hello Alastair, this morning I received the request to make VisIt available on a bunch of Debian (Jessie at the moment, but perhaps Stretch too within a few months) machines, by one of our brightest scientists. I simply cannot deny this. Incidentally, I had started to try to package VisIt (2.12.3) myself, starting with the "official" build script and a pbuilder with "--usenetwork yes". I had added a number of build dependencies, only to fail at the VTK build stage. It turned out that the Xt was missing, but I didn't pursue this any further because I had spotted your IFP/RFP (bug #395573)... So I went ahead and cloned your debian-build git repository - only to find that the last version possibly supported would have been 2.9... I used that debian/ tree to build my own, still with 2.12.3 in mind, and gradually added build-depends. I'm stuck now because something in the build process thinks it would be nice to have python3 support, but there is no python3-vtk6, and that's it. Is it, really? (This seems to be connected to the change that included python3 into python-all-dev. Why there's no python3-vtk6, I don't know, there seems to be no easy way to create one.) I found that Ole Streicher had already asked for the status of the project but didn't get a (public) answer. Perhaps I'm luckier. May I learn what stopped you from working on this build, and what your suggestions are? For now, I'll continue to iterate over the missing X libraries, perhaps I'll be successful in the end. (I won't be happy because this "usenetwork" setting is a horrible kludge, but on the other hand, the whole VisIt build process seems to be. I need to accept that, sooner or later.) Thanks, Steffen
Bug#873607: ITP: odb-api -- Observational Data processing API for meteorology
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: odb-api Version : 0.17.1 Upstream Author : European Centre for Medium-Range Forecasts (ECMWF) * URL : http://software.ecmwdf.int/wiki/display/ODBAPI * License : Apache Programming Lang: C++, Fortran, Python Description : Observational Data processing API for meteorology ODB API is a software developed at ECMWF for encoding and processing of observational data. It includes a SQL filtering and statistics engine, command line tools and APIs for C/C++, Fortran and Python. ODB API works with data format used in ECMWF observational feedback archive. Development of ODB API has been partially funded by the Met Office.
Bug#868013: Fwd: Re: gcc7 transition and dh_fortran
Dear Jakub, I'm contacting you as you would probably know best who is responsible for gfortran in Redhat and know who best to contact amongst the gcc upstream. I'm working on a helper package for Debian packaging of Fortran libraries; it tracks .mod files and their versions. The primary aim is to track when we need to rebuild due to gfortran transitions (mod format changes), but there is a also a related issue due to other compilers, such as the new flang compiler. That is, mod files from different compilers and versions are incompatible. At the moment we place these in Debian in /usr/include, but this is impossible if we have two incompatible fortran compilers (gfortran and flang). I am proposing that we use /usr/include/fortran/$compiler/$version For different compiler versions, and that this path be automatically searched by the compiler. I see a similar discussion here: https://bugzilla.redhat.com/show_bug.cgi?id=1192617 Are you aware of any conclusions or similar proposals? who do you think I should be contacting ? best regards Alastair McKinstry Forwarded Message Subject:Re: gcc7 transition and dh_fortran Resent-Date:Tue, 25 Jul 2017 06:21:59 + (UTC) Resent-From:debian-scie...@lists.debian.org Date: Tue, 25 Jul 2017 07:21:27 +0100 From: Alastair McKinstry <mckins...@debian.org> Organisation: Debian To: Matthias Klose <d...@debian.org>, Sébastien Villemot <sebast...@debian.org>, debian-scie...@lists.debian.org, gcc-maintain...@lists.debian.org On 24/07/2017 11:59, Matthias Klose wrote: > On 05.07.2017 11:28, Alastair McKinstry wrote: >> Hi, >> >> We will be transitioning to gcc7 soon for Buster, and with it there is >> another Fortran transition. This is because the format for gfortrans mod >> files has changed again. > did it? At least the fortran module version is the same upstream (14). > > However the libgfortran soname was bumped from 3 to 4, so we will have a > transition / rebuild cycle anyway. Yes. I had thought that the transition involved a mod file change; it doesn't but there is a transition needed. > > Should compilers be set to check a subdirectory of /usr/include to look > for .mod files suitable for their use? > I haven't looked into that, however if compiler patches would be required then > please discuss these with upstream first. Agreed. I see that there is some similar work proposed on Redhat /Fedora at least: https://bugzilla.redhat.com/show_bug.cgi?id=1192617 https://fedoraproject.org/wiki/Packaging:Fortran https://www.redhat.com/archives/fedora-packaging/2007-October/msg00011.html I will try to co-ordinate with them > Matthias > Alastair -- Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org>, https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#868013: ITP: dh-fortran-mod -- debhelper add-on to handle Fortran '.mod' files
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: dh-fortran-mod Version : 1.0 Upstream Author : Sebastien Villemont <sebast...@debian.org> * URL : http://anonscm.debian.org/gitweb/?p=debian-science/packages/dh-fortran-mod.git * License : GPL3 Programming Lang: Perl Description : debhelper add-on to handle Fortran '.mod' files Modules were introduced in the 1990 revision of the Fortran standard. When the Fortran compiler processes a source file containing a module, it produces both an object file and a '.mod' file. The latter plays a role similar to header files in C, since it is needed when compiling other source files which make use of the module. . The '.mod' files are however platform dependent, and their format changes with the gfortran version . This package provides the dh_fortran_mod command, which simplifies th inclusion of '.mod' files in binary packages. First, it places the '.mod files in the correct platform- and gfortran-dependent location. Second, it adds the right dependency information on gfortran version(s). . Inclusion of dh_fortran_mod in dh sequence is also provided under the name 'fortran_mod'. . This package was originally developed by Sebastien Vilemont.
Bug#864817: ITP: psyclone -- Domain-specific compiler for Finite Difference/Volume/Element Earth-system models in Fortran
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: psyclone Version : 1.4.1 Upstream Author : Rupert Ford <rupert.f...@stfc.ac.uk> * URL : https://github.com/stfc/PSyclone * License : BSD-3-Clause Programming Lang: Python Description : Domain-specific compiler for Finite Difference/Volume/Element Earth-system models in Fortran PSyclone is a code generation system that generates appropriate code for the PSyKAl code structure developed in the GungHo project. This is a Fortran-to-fortran code generator; the GungHo project is the next-generation weather model from the UK Met Office and STFC.
Bug#864778: ITP: fparser -- Python parser for the Fortran language
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: fparser Version : 0.0.4 Upstream Author : Rupert Ford <rupert.f...@stfc.ac.uk> * URL : https://github.com/stfc/fparser * License : BSD-like Programming Lang: Python Description : Python parser for the Fortran language The fparser package is a Python implementation of a Fortran 66/77/90/95/2003 language parser. Currently fparser actually includes two different implementations; the first, “fparser”, supports Fortran 66/77/90 (plus some extensions — see fparser) but only parses down to the level of individual lines of code, i.e. not the content of the Fortran expressions themselves. The second, “fparser2”, also has support for Fortran 2003 and is able to parse Fortran expressions. It is however, less mature than fparser. This package is a dependency of the Psyclone Domain-Specific Language (DSL) for weather codes in Fortran, which I am packaging (and using)
Bug#841277: ITP: usagestats -- Python module to collect usagestats from users
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: usagestats Version : 0.5 Upstream Author : Rene Rampin <remiram...@gmail.com> * URL : https://github.com/remram44/usagestats * License : Apache-2 Programming Lang: Python Description : Python module to collect usagestats from users This is a module to collect anonymous Usage statistics of code. It is a dependency of vistrails (already packaged in Debian) for 2.2.4 onwards.
Bug#826015: ITP: opencoarrays -- Co-array support for gfortran
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: opencoarrays Version : 1.6.0 Upstream Author : Alessandro Fanfarillo * URL : http://www.opencoarrays.org/ 4* License : BSD 3-Clause Programming Lang: C, Fortran Description : Co-array support for gfortran [OpenCoarrays] is an open-source software project that supports the coarray Fortran (CAF) parallel programming features of the Fortran 2008 standard and several features proposed for Fortran 2015 in the draft Technical Specification [TS 18508] _Additional Parallel Features in Fortran_ This provides parallel programming by CAF to Gfortran (6.1 or later) using an MPI library (e.g. OpenMPI). It provides primarily a static library used by gfortran. I plan to maintain it with the debian-science maintainers list and use it at work. Co-maintainers (especially from the gcc team) very welcome.
Bug#817024: ITP: cmor-tables -- MIP tables for the Climate Model Output Rewriter library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: cmor-tables Version : 1.0 Upstream Author : Laurence Livermore Labs (LLNL), PCMDI * URL : https://github.com/PCMDI/ * License : Public Programming Lang: None/XML Description : MIP tables for the Climate Model Output Rewriter library This package contains tables for use with CMOR that describe the variables and format of data needed for the CMIP "Coupled Model Intercomparison Project". . CMOR software uses these tables to verify that output is valid. This package is a follow-on and replacement to cmip5-cmor-tables, currently in Debian, and adds CMIP6 and other tables. The tables are copyright but publically available with license text from LLNL provided in the previous package.
Bug#815893: ITP: python-jpy -- Bi-directional Python-Java bridge
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: python-jpy Version : 0.8 Upstream Author : Brockmann Consult GmbH * URL : http://www.brockmann-consult.de * License : Apache Version 2 Programming Lang: Java, Python Description : Bi-directional Python-Java bridge jpy is a bi-directional Java-Python bridge which you can use to embed Java code in Python programs or the other way round.
Bug#815890: ITP: eccodes -- ECMWF decoding/encoding software library for GRIB, BUFR and GTS formats
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: eccodes Version : 0.13.1 Upstream Author : ECMWF (The European Centre for Medium-Range Weather Forecasts) * URL : https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home * License : Apache Programming Lang: C Description : ECMWF decoding/encoding software library for GRIB, BUFR and GTS formats ecCodes is an application programming interface developed by ECMWF for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2 WMO FM-94 BUFR edition 3 and edition 4 WMO GTS abbreviated header (only decoding in this release). ecCodes is an evolution of GRIB-API, already a package in Debian. A useful set of command line tools provide quick access to the messages. C, Fortran 90 and Python interfaces provide access to the main ecCodes functionality.
Bug#812187: ITP: pnetcdf -- parallel netCDF library for scientific I/O
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: pnetcdf Version : 1.7.0 Upstream Author : Northwestern University and Argonne National Laboratory * URL : https://trac.mcs.anl.gov/projects/parallel-netcdf * License : BSD Programming Lang: C Description : parallel netCDF library for scientific I/O PnetCDF is a library providing high-performance parallel I/O while still maintaining file-format compatibility with Unidata's NetCDF, specifically the formats of CDF-1 and CDF-2. Although NetCDF supports parallel I/O starting from version 4, the files must be in HDF5 format. PnetCDF is currently the only choice for carrying out parallel I/O on files that are in classic formats (CDF-1 and 2). . In addition, PnetCDF supports the CDF-5 file format, an extension of CDF-2, that supports more data types and allows users to define large dimensions, attributes, and variables (>2B elements). . This package will be used as a dependency of the NetCDF package already present in Debian to provide additional functionality, and when stable will be co-maintained in the Debian GIS project.
Bug#805936: ITP: libaec -- Adaptive Entropy Coding library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry <mckins...@debian.org> * Package name: libaec Version : 0.3.2 Upstream Author : Mathis Rosenhauer <rosenha...@dkrz.de> * URL : https://www.dkrz.de/redmine/projects/aec * License : BSD Programming Lang: C Description : Adaptive Entropy Coding library Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa. Libaec implements Golomb Rice coding as defined in the Space Data System Standard documents 121.0-B-2 [1] and 120.0-G-2[2]. libaec also includes a free drop-in implementation of the SZIP library. This has been requested in #740613
Bug#796698: ITP: esmf -- Earth System Modeling Framework (ESMF)
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Definitely interested in this, and I wish to see it in Stretch. I need to re-organise some code in the Debian Meteorology project once the GCC5 ( + netcdf + hdf5) transitions are though. OASIS3 is a user-used library (not used by code within Debian yet but by users) has been replaced by OASIS3MCT. The MCT part is the Model Coupling Toolkit from ESMF. Similarly OASIS3 ships the SCRIP interpolation library that I believe is also shipped in ESMF (Need to re-check). And we need to ship libcf. regards Alastair On 23/08/2015 15:30, Ross Gammon wrote: Package: wnpp Severity: wishlist Owner: Ross Gammon rossgam...@mail.dk * Package name: esmf Version : 6.3.0rp1 Upstream Author : NESII (NOAA Environmental Software Infrastructure and Interoperability) http://www.esrl.noaa.gov/nesii * URL : https://earthsystemcog.org/projects/esmf/ * License : Expat Programming Lang: Fortran, C++, Python Description : Earth System Modeling Framework (ESMF) The Earth System Modeling Framework (ESMF) collaboration is high-performance, flexible software infrastructure for building and coupling weather, climate, and related Earth science applications. The ESMF defines an architecture for composing complex, coupled modeling systems and includes data structures and utilities for developing individual models. . The basic idea behind ESMF is that complicated applications should be broken up into coherent pieces, or components, with standard calling interfaces. In ESMF, a component may be a physical domain, or a function such as a coupler or I/O system. ESMF also includes toolkits for building components and applications, such as regridding software, calendar management, logging and error handling, and parallel communications. The latest NetCDF release which the Debian GIS Team has switched to, no longer includes the libcf library to manage Climate and Forecast standards compliant data files. The Earth System Modeling Framework (ESMF) provides this functionality and more, so the Debian GIS Team would like to see it packaged for Debian. The Debian Science Team (Meteorology) may also be interested in the package. -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Software is like Poetry - most of it shouldn't have been written. -BEGIN PGP SIGNATURE- Version: GnuPG v2 iQIcBAEBCAAGBQJV2dtpAAoJEMvmu05dmtOlMtQQAJumFpH0r3PScxIUZnwvjdAB 3qYkHfnoAJN7A2KTRLrn2DUd1HqxEam2WmLEhqAgyYGiGnpLxvzj1Jqof8k4DSsF zbOPhoOrVdb5vkydtN/izPZRzBkMZm4NE86JcFnhwbKdAbwr4D0Fj8RTxCycsG/I yi/k0qhL42XXpbZdkJkP+J2UDRtCN5kKfRjeP5LdUCeVeCQcEvTaKo95qjoEeeuq /Zc0ETRZR6zXoFtr/0nDguQY9KbKqbLAv2OaW51UZy7toGtMeLNNAnxcsP/35R4M SEHbpJjt5ArYlYNS0r2gWdMvwNEU60lhTbO1AoER6yA0C3m3lD6Lwdb9cUujZP2b 048XTEcYGTXq26ksjOyT88M2t1HnzS/1V4fej+DdqVMs7zvje9XEminuOB1/4ylX cYeAbgJXkZZVsA7TYTlEZinuD027exbRY5/jnL6OVvacJK5zXL8jqnc1Stxif/22 9QQWPNK2fBIpIWzSh0kw2JAlDU8ztR+y9ak+sdpoJ8MLMInjo+qYyIcKPtBZBKBC HJHZ8igVICoGIIzCthzm25RzcpjFSaARkbRCVFiF8h5gcvmqM8ERyK0WxvzMamIU /+I+8c7xGTgDoi85Qytp7okfLkajLmkER1SbpXVGbcna5eEwkdCc09GC+ZAVmUYh s8R4Q/+k5Aj6AVzBXxuq =tDq8 -END PGP SIGNATURE-
Bug#733823: Adopting dxflib
Hi, I'm willing to step in as responsible uploader for dxflib, as it is now a dependency of a package I maintain, terralib. regards Alastair -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/55c59a1b.70...@sceal.ie
Bug#788814: ITP: cylc -- Workflow scheduler for meteorology
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: cylc Version : 6.4.1 Upstream Author : Hilary Oliver, hilary.oli...@niwa.org * URL : http://cylc.github.io/cylc * License : GPLv3 Programming Lang: Python Description : Workflow scheduler for meteorology Cylc (silk) is a suite engine and meta-scheduler that specializes in suites of cycling tasks for weather forecasting, climate modeling, and related processing (it can also be used for one-off workflows of non-cycling tasks, which is a simpler problem). It is planned to maintain this within debian-science, as part of the Debian/Meteorology Pure Blend. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20150615095001.28476.95941.report...@mail.sceal.ie
Bug#788817: ITP: fcm -- Flexible Configuration Manager
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: fcm Version : 2015.5.0 Upstream Author : UK Met Office * URL : http://www.metoffice.gov.uk/research/collaboration/fcm * License : GPLv3 Programming Lang: Perl Description : Flexible Configuration Manager FCM is a set of tools for managing and building source code. FCM uses Subversion for code management but defines a common process and naming convention to simplify usage. It adds a layer on top of Subversion to provide a more natural and user-friendly interface. . FCM features a powerful build system, mainly aimed at building modern Fortran software applications. It is planned that FCM will be maintained as part of debian-science. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20150615104542.29432.78079.report...@mail.sceal.ie
Bug#395573: visit: changing back from ITP to RFP
On 13/06/2015 14:58, Francesco Poli wrote: On Thu, 11 Jun 2015 12:13:41 +0100 Alastair McKinstry wrote: Hi Sorry about the delay , the git repo is at: git://git.debian.org/git/debian-science/packages/visit.git/ Thanks a lot, I've just cloned it. I see that there's very recent activity on the repository. Does this mean that you are back to work on visit packaging?!? That would be really really great news, and should perhaps be publicly announced with a new RFP→ITP bug conversion... :-) I really hope you can confirm this. Yes. I plan to get visit into Stretch, as it is a requirement for the UV-CDAT analysis package, which is one of my main goals for stretch. The main blocker for jessie was VTK6, which I think is (nearly?) resolved. Visit depends on VTK6 Thanks for your time. Bye. P.S.: You replied to me privately: is there any special reason? I think that the URI for the git repository should be disclosed to the public on the RFP bug log... Could you please reply to the bug address, or, alternatively, authorize me to forward your reply there? Thanks! It was not meant to be private, so i've CC'd the bug address. regards Alastair -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/557e6f9f.8010...@sceal.ie
Bug#784438: ITP: autosubmit -- Manage weather and climate experiments on supercomputers
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: autosubmit Version : 3.0.0rc8 Upstream Author : Domingo Manubens-Gil domingo.manub...@ic3.cat * URL : https://autosubmit.ic3.cat * License : GPLv3 Programming Lang: Python Description : Manage weather and climate experiments on supercomputers Autosubmit: a versatile tool to manage Weather and Climate Experiments in diverse Supercomputing Environments . Autosubmit is a tool to create, manage and monitor experiments using Computing Clusters, HPC's and Supercomputers remotely via ssh. This will also need pydotplus to be packaged first. It is planned that this will be added to debian-science / Debian Meteorology -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20150506110520.16812.60636.report...@mail.sceal.ie
Bug#395573: visit: changing back from ITP to RFP
Hi, Its available at: ssh://git.debian.org/git/pkg-visit/pkg-visit.git Most of the work was slightly outdated by the vtk5-vtk6 transition so I would be able to recreate it again when I get down to work post-jessie, but not right now. regards Alastair On 20/11/2014 21:43, Francesco Poli wrote: On Thu, 06 Nov 2014 14:48:24 +0100 Christophe Trophime wrote: On Wed, 30 Jul 2014 10:32:34 +0100 Alastair McKinstry alastair.mckins...@sceal.ie wrote: This is a note to say I have been working on visit packaging, but am unlikely to complete before December due to completing a PhD. VisIt packaging has been mostly delayed awaiting vtk6 to be properly integrated and packaged in Debian (thus not requiring a separate visit-vtk). I have uploaded my work to date to alioth.debian.org (pkg-visit) where is can be downloaded via git.debian.org:/git/pkg-visit/pkg-visit.git It seems that the git repository pkg-visit is no longer accessible. Could you confirm? [...] Dear Alastair, could you please help Christophe Trophime and me in finding the git repository where you uploaded your packaging work? I could not find it listed in https://anonscm.debian.org/cgit/ I did find: https://alioth.debian.org/projects/pkg-visit/ but the SCM Repository link takes me to https://alioth.debian.org/scm/?group_id=100926 which is apparently accessible for alioth registered users only. This is strange... After logging in to Alioth, I could view the page describing the access to the git repository: it mentions the Developer Git Access via SSH, which is claimed to be for project developers only, and then illustrates the Git Repository Browser with a link to https://alioth.debian.org/scm/browser.php?group_id=100926 which, however, shows a 404 - No such project Now I am really puzzled: where is the git repository?:-/ Please let us know. Thanks for your time! -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/54731b34.5030...@sceal.ie
Bug#730666: python-netcd4 ITP
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Relevant to this ITP a discussion on debian-science (see the link from the wiki here: https://wiki.debian.org/DebianScience/Meteorology ). Its important that the python/netcdf objects we use are compatible. Is python-netcdf4 compatible with scipy netcdf ? can /should they be merged? Can we track the details on the wiki? regards Alastair - -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Software is like Poetry - most of it shouldn't have been written. -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJUbyYdAAoJEN9LdrZRJ3Qs5YkP/1RH6dnKpiDrIND4KJTbjMEi odFbwZXxmL+oS1QsbWrtDmAuchxeCBcd1RqfjmnBYK1mvpu71cOdTVOLhkTydUCC aH3GeClrH+RgELW3IXmQye0KY4bbjAv2y3LicazGwLbQJuAwzXPyUJJRrEfvoBlW qrUT/ARPCQilM8z2lbeFR/HKEKMeNMe/TXt6d+uFrn7n1LQZCq0SkJb6NmnSnwQZ IN9XSw97Xg+m4RL6l1Pw89HrhcbBta1jMuN0GxJR/TUO7vWGpEcW+lpLy7HSsxCL NvtGiILUs1s/mu+SvsPAsYuyQiv9tFXW0NmTWaw/ZsqBFlM1bPD58WHpEdxPxLNP F7D3YyXCD9ry515A/Kn/sIxuPQ11vu9/s8m7cGpWpmVopf/X0HamtozgRw1YR9KI chAZSvg2NsdNHvsNgzUF8xrIIVoPTuSdMTystumrHcjsyTsksOQrQyQb6AQemVIs w4x236uj+ulMj/wMolDuyxZFQHWjCPkwhle+a2iNDp6H8fdZDFDyiSVrPgd9Cw/P 967LWQZY/UDrNppMBzmd30rU6REgxKyxSC6GrMEv2A3RtIMUDnXCGmYe0Uu1nVcB dhRp42Ymm7LURSLGTymtintPY20tWbNtiqz7x+mA+unKDGT0+fjAMnFvzjYwuP3G 0pN0y+u9g9Ynzfxcdp6d =iTFG -END PGP SIGNATURE- -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/546f261e.5030...@debian.org
Bug#766859: RFH: openmpi -- high performance message passing library -- header files
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi Sylvestre, I'm willing to step in as co-maintainer if you wish. We use and support OpenMPI at the supercomputing centre where I work (www.ichec.ie). If possible I would like to get the current patches enabled in jessie (especially #752785 which I wrote, as it enables functionality already added to mpich). regards Alastair On 26/10/2014 11:15, Sylvestre Ledru wrote: Package: wnpp Severity: normal Hello, I am no longer using OpenMPI and the other co maintainer is no really active. It would be nice to have someone who cares about OpenMPI helping in its maintenance. It is not an hard package to maintain and it is quite interesting. So, I request assistance with maintaining the openmpi package. The package description is: Open MPI is a project combining technologies and resources from several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best MPI library available. A completely new MPI-2 compliant implementation, Open MPI offers advantages for system and software vendors, application developers and computer science researchers. . This package contains the header files and compiler wrappers which are needed to compile and link programs against libopenmpi. Thanks, Sylvestre -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Software is like Poetry - most of it shouldn't have been written. -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJUTqHYAAoJEN9LdrZRJ3QswrcP/j5uSgm5ecZaAcCn6zGWVSSh wuCQrhMoCzGDzY2+uVzsilsRO7Ix45zDpdgNiw2OBxAw3Y8kyvsajGuWw1ZWh1Bb TSLBhIl8/XSFKebD5MAACB4tUwS929BP4cBKtiEm72CqNKLdHepE2FkvGsay+pbC tvJgGGwduym/BXWUfc5ra/Kv/31fi8ubWA25iH16F3/4q9OO1yhzPkFf99NXA9dn 6Ff6FnBsaGU9EmD3kfUiHOveU01vEEc3+F0NAHaIixmch6khYplyzzNBSsmUb4Ep ksADvq2GD0VwNkpBiZePHRxB0TPsq/9enoXV7lz+72dInvTNMWnQXNzU5/kS/Jro NRBntVLhm9bCJLcWsOichY/tkUt3RfbZ3dQ+gLKvqOZxc6C/gpXQ9iO4VitTmoUg gybJfk9PrxpfJg9X6w3zZs1HhK0iEcps4tcVJZu+loBG+o0VnAJ2MuKe1k7BXQym awtiX2Qn3EYGhZRCsATQ14Km6gv8CU8rtewJWA9ZGMGqGpt4294YSJ3Ub5wuRr5H qoOZRaMsmyORoS8BASfGSp2eLqC3PkPaUGfGsdct3YGEBk0fpTlFFaj0zdsWDLgC nVjpNJG7TmXPmkUQwpcJmzA+Efa+JLVveVgEtmfuaEVgHGwtQi8qgAhE9rtrCRMJ 6iGnJ9ge/UwbXPEHtuIk =moKy -END PGP SIGNATURE- -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/544ea1d9.4040...@debian.org
Bug#766859: RFH: openmpi -- high performance message passing library -- header files
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi Sylvestre, I'm willing to step in as co-maintainer if you wish. We use and support OpenMPI at the supercomputing centre where I work (www.ichec.ie). If possible I would like to get the current patches enabled in jessie (especially #752785 which I wrote, as it enables functionality already added to mpich). regards Alastair On 26/10/2014 11:15, Sylvestre Ledru wrote: Package: wnpp Severity: normal Hello, I am no longer using OpenMPI and the other co maintainer is no really active. It would be nice to have someone who cares about OpenMPI helping in its maintenance. It is not an hard package to maintain and it is quite interesting. So, I request assistance with maintaining the openmpi package. The package description is: Open MPI is a project combining technologies and resources from several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best MPI library available. A completely new MPI-2 compliant implementation, Open MPI offers advantages for system and software vendors, application developers and computer science researchers. . This package contains the header files and compiler wrappers which are needed to compile and link programs against libopenmpi. Thanks, Sylvestre -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Software is like Poetry - most of it shouldn't have been written. -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJUTqHYAAoJEN9LdrZRJ3QswrcP/j5uSgm5ecZaAcCn6zGWVSSh wuCQrhMoCzGDzY2+uVzsilsRO7Ix45zDpdgNiw2OBxAw3Y8kyvsajGuWw1ZWh1Bb TSLBhIl8/XSFKebD5MAACB4tUwS929BP4cBKtiEm72CqNKLdHepE2FkvGsay+pbC tvJgGGwduym/BXWUfc5ra/Kv/31fi8ubWA25iH16F3/4q9OO1yhzPkFf99NXA9dn 6Ff6FnBsaGU9EmD3kfUiHOveU01vEEc3+F0NAHaIixmch6khYplyzzNBSsmUb4Ep ksADvq2GD0VwNkpBiZePHRxB0TPsq/9enoXV7lz+72dInvTNMWnQXNzU5/kS/Jro NRBntVLhm9bCJLcWsOichY/tkUt3RfbZ3dQ+gLKvqOZxc6C/gpXQ9iO4VitTmoUg gybJfk9PrxpfJg9X6w3zZs1HhK0iEcps4tcVJZu+loBG+o0VnAJ2MuKe1k7BXQym awtiX2Qn3EYGhZRCsATQ14Km6gv8CU8rtewJWA9ZGMGqGpt4294YSJ3Ub5wuRr5H qoOZRaMsmyORoS8BASfGSp2eLqC3PkPaUGfGsdct3YGEBk0fpTlFFaj0zdsWDLgC nVjpNJG7TmXPmkUQwpcJmzA+Efa+JLVveVgEtmfuaEVgHGwtQi8qgAhE9rtrCRMJ 6iGnJ9ge/UwbXPEHtuIk =moKy -END PGP SIGNATURE- -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/544ea1d9.8090...@debian.org
Bug#766859: RFH: openmpi -- high performance message passing library -- header files
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi Sylvestre, I'm willing to step in as co-maintainer if you wish. We use and support OpenMPI at the supercomputing centre where I work (www.ichec.ie). If possible I would like to get the current patches enabled in jessie (especially #752785 which I wrote, as it enables functionality already added to mpich). regards Alastair On 26/10/2014 11:15, Sylvestre Ledru wrote: Package: wnpp Severity: normal Hello, I am no longer using OpenMPI and the other co maintainer is no really active. It would be nice to have someone who cares about OpenMPI helping in its maintenance. It is not an hard package to maintain and it is quite interesting. So, I request assistance with maintaining the openmpi package. The package description is: Open MPI is a project combining technologies and resources from several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best MPI library available. A completely new MPI-2 compliant implementation, Open MPI offers advantages for system and software vendors, application developers and computer science researchers. . This package contains the header files and compiler wrappers which are needed to compile and link programs against libopenmpi. Thanks, Sylvestre -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry Software is like Poetry - most of it shouldn't have been written. -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJUTqHYAAoJEN9LdrZRJ3QswrcP/j5uSgm5ecZaAcCn6zGWVSSh wuCQrhMoCzGDzY2+uVzsilsRO7Ix45zDpdgNiw2OBxAw3Y8kyvsajGuWw1ZWh1Bb TSLBhIl8/XSFKebD5MAACB4tUwS929BP4cBKtiEm72CqNKLdHepE2FkvGsay+pbC tvJgGGwduym/BXWUfc5ra/Kv/31fi8ubWA25iH16F3/4q9OO1yhzPkFf99NXA9dn 6Ff6FnBsaGU9EmD3kfUiHOveU01vEEc3+F0NAHaIixmch6khYplyzzNBSsmUb4Ep ksADvq2GD0VwNkpBiZePHRxB0TPsq/9enoXV7lz+72dInvTNMWnQXNzU5/kS/Jro NRBntVLhm9bCJLcWsOichY/tkUt3RfbZ3dQ+gLKvqOZxc6C/gpXQ9iO4VitTmoUg gybJfk9PrxpfJg9X6w3zZs1HhK0iEcps4tcVJZu+loBG+o0VnAJ2MuKe1k7BXQym awtiX2Qn3EYGhZRCsATQ14Km6gv8CU8rtewJWA9ZGMGqGpt4294YSJ3Ub5wuRr5H qoOZRaMsmyORoS8BASfGSp2eLqC3PkPaUGfGsdct3YGEBk0fpTlFFaj0zdsWDLgC nVjpNJG7TmXPmkUQwpcJmzA+Efa+JLVveVgEtmfuaEVgHGwtQi8qgAhE9rtrCRMJ 6iGnJ9ge/UwbXPEHtuIk =moKy -END PGP SIGNATURE- -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/544ea1d8.2090...@debian.org
Bug#668596: Fwd: Re: iRODS in Debian
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 - -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 FYI - - Original Message Subject: Re: iRODS in Debian Date: Tue, 28 Jan 2014 09:34:22 -0500 From: Terrell Russell t...@renci.org To: Alastair McKinstry mckins...@debian.org Hi Alastair, We still haven't started with source packages - but the code is all at github now - so you can definitely play around with what we've got. https://github.com/irods/irods We are still moving stuff around quite a bit in the run up to 4.0 in March (we're on 4.0.0b1 right now), but I think after that, we will be a better candidate for getting into Debian upstream. Any help / assistance you want to provide would be great. I've not packaged anything for upstream before, so I look forward to working together to make it a reality. Thanks, Terrell On 1/28/14 6:29 AM, Alastair McKinstry wrote: - -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJT7H5+AAoJEN9LdrZRJ3QszMEP/jxGyXNr5S7onzE4mbgkEPfP oneU0HGVjJxKqlgzHjfLMMzkWuY4YErBqEOTROWXzcMLi9ZeTP+dc7be8KF6NVR8 noFI5IHXEursBblVNmWQNIKxzLo417drj95UX9IbeFDMav2iSAR3cR5yucULKmPa M+6/5e1enL7quW9kuDPU18hpozkhnU9LKMLUwjxtzGDMICCmPl3Ej9vUwT81bWHx Cc7XikRQ6JwAmZU+i8zSUL9yh6+DM/YYURxs5LrSopDhCj5yHDiHrDa1WoRt3pC4 bNww1yedeWfIfOBsu2R7MV424pecV7kN9q42Rmf+s10z8aaGoL7+5baJm1UiS8my 3hSDY0OLxOMxuKeSKUi6FFbO+Uabws4uSjF6z09SPcri3ZJyvuelktZXFDgkL9dF CL0yWRuQFsz+W5KbfSDB6IaLTF3ZXHk5tDKiXk2vANK04XpvAipk5ZeQdGevf9mE ISZMG9vZRTQtZEop/XQijYHvrJ4x5ouQS+WclmlhrO4lqc87af1NItCkWvLphUFd zQHcyBlAxSbffTMxWoUupGn2FZXfGsSEd+6ljOShSB6w6HoENokU9zgdi3piCrmb tuDjT71FD8TglsALglYLJ4g+0iTlKylSTWQp46bRGAL2q1aR/46Y5jATPJsHBTTS NvN1P4yyEALZGy7MU7ee =YCVb - -END PGP SIGNATURE- -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJT7H5+AAoJEN9LdrZRJ3QsQRMP/RF6g35av1Se6kjbR2k7keBP dkopMNUy7s/Qui+4aCdNF0r0eXE9qr5o5oSs0ab8ibotEzFvh77wa/f9VZF3Qkdt wrvXeMRV6nHyQEYtZj9Gdg5Wwbjyv3R1gltvSAI0LvQ5T/QDTuO/wyXt9IXwg5sH 8RKj10D3YFBQeEjBh78Ppp9mrULwMFGIA6D7lE7hmnYCXDlLihoDJMmxdZ4pT1eP Nb2qtiYE7e2/zUJAq7Wtjygpb/HPiW6WP1cuPlbd8PSyo9FAcbCjJWmC+3UmhLo4 /kkOiEEmH4JcjjSGBD9kKH4WN3B5e6HEhefX9zbzn3KZQJBCMsu0sy9gTQaO2/gD TPx1E2MIGnDURj8kofyQrVrBSCK39Df14z+gjXXpnzpvwD5TcZ41gIT2DMNRpOtJ TDcKtl4KZCwftb18OeBR/K2Ijl/w4TFnD2AbOJvDeLb0G98MS2JawH+zl1zOLeyi rKcdTGbfSL4p9n6CJgXFLb6G03uHBJZ8eJMxe7NPl9MsOZ7hjbN6UJ0QTgBTLgEj 1Gtb+y8+XKvBbtWrc0EJrSxRJXo3caFwT9V9GqweyGmuzgmkeSDAHJhppdXm6itS 10uRROM/c+l8IMyB8Bh1ZPqO2ua7BHU4ZIc5lVDq+solVCCLIfEHj3Iy4rio+tNm eUlj/NliHNi8HuUbbBjn =Bs9d -END PGP SIGNATURE-
Bug#668596: Fwd: Re: iRODS in Debian
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 - -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 FYI - - Original Message Subject: Re: iRODS in Debian Date: Tue, 28 Jan 2014 09:34:22 -0500 From: Terrell Russell t...@renci.org To: Alastair McKinstry mckins...@debian.org Hi Alastair, We still haven't started with source packages - but the code is all at github now - so you can definitely play around with what we've got. https://github.com/irods/irods We are still moving stuff around quite a bit in the run up to 4.0 in March (we're on 4.0.0b1 right now), but I think after that, we will be a better candidate for getting into Debian upstream. Any help / assistance you want to provide would be great. I've not packaged anything for upstream before, so I look forward to working together to make it a reality. Thanks, Terrell On 1/28/14 6:29 AM, Alastair McKinstry wrote: - -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJT7H5+AAoJEN9LdrZRJ3QszMEP/jxGyXNr5S7onzE4mbgkEPfP oneU0HGVjJxKqlgzHjfLMMzkWuY4YErBqEOTROWXzcMLi9ZeTP+dc7be8KF6NVR8 noFI5IHXEursBblVNmWQNIKxzLo417drj95UX9IbeFDMav2iSAR3cR5yucULKmPa M+6/5e1enL7quW9kuDPU18hpozkhnU9LKMLUwjxtzGDMICCmPl3Ej9vUwT81bWHx Cc7XikRQ6JwAmZU+i8zSUL9yh6+DM/YYURxs5LrSopDhCj5yHDiHrDa1WoRt3pC4 bNww1yedeWfIfOBsu2R7MV424pecV7kN9q42Rmf+s10z8aaGoL7+5baJm1UiS8my 3hSDY0OLxOMxuKeSKUi6FFbO+Uabws4uSjF6z09SPcri3ZJyvuelktZXFDgkL9dF CL0yWRuQFsz+W5KbfSDB6IaLTF3ZXHk5tDKiXk2vANK04XpvAipk5ZeQdGevf9mE ISZMG9vZRTQtZEop/XQijYHvrJ4x5ouQS+WclmlhrO4lqc87af1NItCkWvLphUFd zQHcyBlAxSbffTMxWoUupGn2FZXfGsSEd+6ljOShSB6w6HoENokU9zgdi3piCrmb tuDjT71FD8TglsALglYLJ4g+0iTlKylSTWQp46bRGAL2q1aR/46Y5jATPJsHBTTS NvN1P4yyEALZGy7MU7ee =YCVb - -END PGP SIGNATURE- -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJT7H5+AAoJEN9LdrZRJ3QsQRMP/RF6g35av1Se6kjbR2k7keBP dkopMNUy7s/Qui+4aCdNF0r0eXE9qr5o5oSs0ab8ibotEzFvh77wa/f9VZF3Qkdt wrvXeMRV6nHyQEYtZj9Gdg5Wwbjyv3R1gltvSAI0LvQ5T/QDTuO/wyXt9IXwg5sH 8RKj10D3YFBQeEjBh78Ppp9mrULwMFGIA6D7lE7hmnYCXDlLihoDJMmxdZ4pT1eP Nb2qtiYE7e2/zUJAq7Wtjygpb/HPiW6WP1cuPlbd8PSyo9FAcbCjJWmC+3UmhLo4 /kkOiEEmH4JcjjSGBD9kKH4WN3B5e6HEhefX9zbzn3KZQJBCMsu0sy9gTQaO2/gD TPx1E2MIGnDURj8kofyQrVrBSCK39Df14z+gjXXpnzpvwD5TcZ41gIT2DMNRpOtJ TDcKtl4KZCwftb18OeBR/K2Ijl/w4TFnD2AbOJvDeLb0G98MS2JawH+zl1zOLeyi rKcdTGbfSL4p9n6CJgXFLb6G03uHBJZ8eJMxe7NPl9MsOZ7hjbN6UJ0QTgBTLgEj 1Gtb+y8+XKvBbtWrc0EJrSxRJXo3caFwT9V9GqweyGmuzgmkeSDAHJhppdXm6itS 10uRROM/c+l8IMyB8Bh1ZPqO2ua7BHU4ZIc5lVDq+solVCCLIfEHj3Iy4rio+tNm eUlj/NliHNi8HuUbbBjn =Bs9d -END PGP SIGNATURE-
Bug#668596: Fwd: Re: iRODS in Debian
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 FYI - Original Message Subject: Re: iRODS in Debian Date: Tue, 28 Jan 2014 09:34:22 -0500 From: Terrell Russell t...@renci.org To: Alastair McKinstry mckins...@debian.org Hi Alastair, We still haven't started with source packages - but the code is all at github now - so you can definitely play around with what we've got. https://github.com/irods/irods We are still moving stuff around quite a bit in the run up to 4.0 in March (we're on 4.0.0b1 right now), but I think after that, we will be a better candidate for getting into Debian upstream. Any help / assistance you want to provide would be great. I've not packaged anything for upstream before, so I look forward to working together to make it a reality. Thanks, Terrell On 1/28/14 6:29 AM, Alastair McKinstry wrote: Hi, I see that iRODS 4.0.0 merging eIRODS and IRODS has been released. Do you have any developments in packaging this? I would like to package and include this in Debian. regards Alastair On 27/06/2012 13:02, Terrell Russell wrote: Ah, we don't yet have a source package as we are still in the process of developing licensing decisions. The plan is to be fully open source, but for now, we have only beta released the binary DEB files for E-iRODS. Terrell On 6/27/12 5:27 AM, Alastair McKinstry wrote: On 2012-06-27 03:45, Terrell Russell wrote: Alastair, Regarding the wnpp ITP bug for iRODS here: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=668596 We at RENCI have been working on packaging iRODS/E-iRODS for the last few months. We released our second beta this week. http://e-irods.org/release/e-irods-beta-2-is-released/ http://e-irods.org/about/ We are not yet lintian clean, but we are close and hope to start the eventual process of getting our software into the Debian upstream. Is it possible to get the source package? I can only see the .deb files in the ftp site. best regards Alastair Since you are named as the owner of this intent to package bug, I wanted to let you know of our progress. We are working closely with the DICE group, original authors and maintainers of the iRODS community code base. Thank you, Terrell -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCAAGBQJT7H5+AAoJEN9LdrZRJ3QszMEP/jxGyXNr5S7onzE4mbgkEPfP oneU0HGVjJxKqlgzHjfLMMzkWuY4YErBqEOTROWXzcMLi9ZeTP+dc7be8KF6NVR8 noFI5IHXEursBblVNmWQNIKxzLo417drj95UX9IbeFDMav2iSAR3cR5yucULKmPa M+6/5e1enL7quW9kuDPU18hpozkhnU9LKMLUwjxtzGDMICCmPl3Ej9vUwT81bWHx Cc7XikRQ6JwAmZU+i8zSUL9yh6+DM/YYURxs5LrSopDhCj5yHDiHrDa1WoRt3pC4 bNww1yedeWfIfOBsu2R7MV424pecV7kN9q42Rmf+s10z8aaGoL7+5baJm1UiS8my 3hSDY0OLxOMxuKeSKUi6FFbO+Uabws4uSjF6z09SPcri3ZJyvuelktZXFDgkL9dF CL0yWRuQFsz+W5KbfSDB6IaLTF3ZXHk5tDKiXk2vANK04XpvAipk5ZeQdGevf9mE ISZMG9vZRTQtZEop/XQijYHvrJ4x5ouQS+WclmlhrO4lqc87af1NItCkWvLphUFd zQHcyBlAxSbffTMxWoUupGn2FZXfGsSEd+6ljOShSB6w6HoENokU9zgdi3piCrmb tuDjT71FD8TglsALglYLJ4g+0iTlKylSTWQp46bRGAL2q1aR/46Y5jATPJsHBTTS NvN1P4yyEALZGy7MU7ee =YCVb -END PGP SIGNATURE-
Bug#395573: visit: changing back from ITP to RFP
This is a note to say I have been working on visit packaging, but am unlikely to complete before December due to completing a PhD. VisIt packaging has been mostly delayed awaiting vtk6 to be properly integrated and packaged in Debian (thus not requiring a separate visit-vtk). I have uploaded my work to date to alioth.debian.org (pkg-visit) where is can be downloaded via git.debian.org:/git/pkg-visit/pkg-visit.git regards Alastair McKinstry On 28/07/2014 14:47, Lucas Nussbaum wrote: retitle 395573 RFP: visit -- interactive parallel visualization and graphical analysis tool noowner 395573 tag 395573 - pending thanks Hi, A long time ago, you expressed interest in packaging visit. Unfortunately, it seems that it did not happen. In Debian, we try not to keep ITP bugs open for a too long time, as it might cause other prospective maintainers to refrain from packaging the software. This is an automatic email to change the status of visit back from ITP (Intent to Package) to RFP (Request for Package), because this bug hasn't seen any activity during the last 12 months. If you are still interested in packaging visit, please send a mail to cont...@bugs.debian.org with: retitle 395573 ITP: visit -- interactive parallel visualization and graphical analysis tool owner 395573 ! thanks It is also a good idea to document your progress on this ITP from time to time, by mailing 395...@bugs.debian.org. If you need guidance on how to package this software, please reply to this email, and/or contact the debian-ment...@lists.debian.org mailing list. Thank you for your interest in Debian, -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry A decent provision for the poor is the true test of civilization. ~Samuel Johnson, Boswell: Life of Johnson -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/53d8bbb2.4000...@sceal.ie
Bug#693834: metview: changing back from ITP to RFP
Hi Is this an automated check? metview is cureently sitting in the NEW queue and has been for several months. regards Alastair On 26/07/2014 19:40, Lucas Nussbaum wrote: retitle 693834 RFP: metview -- Interactive data visualization and analysis environment noowner 693834 tag 693834 - pending thanks Hi, A long time ago, you expressed interest in packaging metview. Unfortunately, it seems that it did not happen. In Debian, we try not to keep ITP bugs open for a too long time, as it might cause other prospective maintainers to refrain from packaging the software. This is an automatic email to change the status of metview back from ITP (Intent to Package) to RFP (Request for Package), because this bug hasn't seen any activity during the last 18 months. If you are still interested in packaging metview, please send a mail to cont...@bugs.debian.org with: retitle 693834 ITP: metview -- Interactive data visualization and analysis environment owner 693834 ! thanks It is also a good idea to document your progress on this ITP from time to time, by mailing 693...@bugs.debian.org. If you need guidance on how to package this software, please reply to this email, and/or contact the debian-ment...@lists.debian.org mailing list. Thank you for your interest in Debian, -- Alastair McKinstry, alast...@sceal.ie, mckins...@debian.org, https://diaspora.sceal.ie/u/amckinstry A decent provision for the poor is the true test of civilization. ~Samuel Johnson, Boswell: Life of Johnson -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/53d4e6ea.1080...@sceal.ie
Bug#732290: ITP: pyferret -- Python encapsulation of the Ferret data analysis and visualization toolkit
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: pyferret Version : 1.0.0 Upstream Author : Pacific Marine Environmental Laboratory oar.pmel.contact_fer...@noaa.gov * URL : http://ferret.pmel.noaa.gov/Ferret/documentation/pyferret * License : Ferret License Agreement (BSD-like) Programming Lang: python, C Description : Python encapsulation of the Ferret data analysis and visualization toolkit PyFerret is a Python module wrapping Ferret. The pyferret module provides Python functions so Python users can easily take advantage of the Ferret's abilities to retrieve, manipulate, visualize, and save data. There are also functions to move data between Python and the Ferret engine. Python scripts used as Ferret external functions. But PyFerret can also be used as a transparent replacement for the traditional Ferret executable. A simple script starts Python and enters the pyferret module, giving the traditional Ferret interface. This script also support all of Ferret's command-line options. Inside the PyFerret wrapper is a complete, but enhanced Ferret engine. One very noticeable enhancement is improved graphics which can be saved in common image formats. (Sorry, no more GKS metafiles.) Also, PyFerret comes packaged with many new statistical and shapefile function which are, in fact, Python scripts making use of third-party Python modules. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20131216123149.16259.75279.report...@ailm.sceal.ie
Bug#729814: ITP: makedepf90 -- Fortran-90 dependency processor for Makefiles
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: makedepf90 Version : 2.8.8 Upstream Author : Erik Edelmann URL : http://personal.inet.fi/private/erikedelmann/makedepf90 * License : GPL Programming Lang: C Description : Fortran-90 dependency processor for Makefiles Makedepf90 is a program for automatic creation of Makefile dependency lists for Fortran source code. Makedepf90 supports MODULE:s, INCLUDE:s, cpp #include:s, f90ppr $include:s and coco ??include:s and set-files. Its functionality is similar to : 'gcc -MM *.c ' for C. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20131117202148.15133.73073.report...@ailm.sceal.ie
Bug#668596: Fwd: Re: iRODS in Debian
To track: Original Message Subject:Re: iRODS in Debian Date: Wed, 27 Jun 2012 08:02:20 -0400 From: Terrell Russell t...@renci.org To: Alastair McKinstry mckins...@debian.org Ah, we don't yet have a source package as we are still in the process of developing licensing decisions. The plan is to be fully open source, but for now, we have only beta released the binary DEB files for E-iRODS. Terrell On 6/27/12 5:27 AM, Alastair McKinstry wrote: On 2012-06-27 03:45, Terrell Russell wrote: Alastair, Regarding the wnpp ITP bug for iRODS here: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=668596 We at RENCI have been working on packaging iRODS/E-iRODS for the last few months. We released our second beta this week. http://e-irods.org/release/e-irods-beta-2-is-released/ http://e-irods.org/about/ We are not yet lintian clean, but we are close and hope to start the eventual process of getting our software into the Debian upstream. Is it possible to get the source package? I can only see the .deb files in the ftp site. best regards Alastair Since you are named as the owner of this intent to package bug, I wanted to let you know of our progress. We are working closely with the DICE group, original authors and maintainers of the iRODS community code base. Thank you, Terrell
Bug#395573: status of visit packaging
Hi, No, I've just been delayed by trying to finish my PhD ... There was some work in progress to merge / update VTK so that VisIT/Paraview did not use their own version, which I will need to revisit. I should at least put my work in alioth,etc so someone else could take over. regards Alastair On 10/07/2013 15:17, Adrien Grellier wrote: Hi, Is there any news on the Visit packaging ? Did you find the time to put your work on a VCS ? On the wiki page, I see no blocking stuff to prevent Visit to be packaging for Debian, so I wonder if it's still the case. Regards, Adrien -- Alastair McKinstry , alast...@sceal.ie , mckins...@debian.org http://blog.sceal.ie Anyone who believes exponential growth can go on forever in a finite world is either a madman or an economist - Kenneth Boulter, Economist. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/51dd6f47.2020...@sceal.ie
Bug#709631: ITP: cdftools -- A fortran package for diagnostics of ocean model output
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: cdftools Version : 3.0 Upstream Author : Jean-Marc.Molines jean-marc.moli...@legi.grenoble-inp.fr * URL : http://servforge.legi.grenoble-inp.fr/projects/CDFTOOLS * License : GPL Programming Lang: Fortran Description : A fortran package for diagnostics of ocean model output CDFTOOLS is a diagnostic package written in fortran 90 for the analysis of NEMO model output in the frame of the DRAKKAR project. NEMO (Nucleus for European Modelling of the Ocean) is a state-of-the-art modeling framework for oceanographic research, operational oceanography seasonal forecast and climate studies. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130524150339.29485.98637.report...@ailm.sceal.ie
Bug#696238: ITP: python-gsw -- Python implementation of the Thermodynamic Equation of Seawater
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: python-gsw Version : 3.0.1 Upstream Author : Filipe Fernandes * URL : http://pypi.python.org/pypi/seawater/ * License : MIT Programming Lang: Python Description : Python implementation of the Thermodynamic Equation of Seawater This package implements the TEOS-10 Equation of State for seawater. TEOS-10 is based on a Gibbs function formulation from which all thermodynamic properties of seawater (density, enthalpy, entropy sound speed, etc.) can be derived in a thermodynamically consistent manner. TEOS-10 was adopted by the Intergovernmental Oceanographic Commission at its 25th Assembly in June 2009 to replace EOS-80 as the official description of seawater and ice properties in marine science. . For further information, see http://www.teos-10.org/ -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121218143540.30318.88646.report...@ailm.sceal.ie
Bug#693829: ITP: python-iapws -- Python implementation of the international APWS-IF97 steam tables
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: python-iapws Version : 1.0.0 Upstream Author : jjgomera jjgom...@gmail.com * URL : http://pypi.python.org/pypi/iapws * License : GPL Programming Lang: Python Description : Python implementation of the international APWS-IF97 steam tables This is a python class to model a state for liquid water or steam with the Industrial Formulation IAPWS-IF97. . Further information on the standard is available at http://www.iapws.org -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121120194206.20690.14758.report...@ailm.sceal.ie
Bug#693831: ITP: flextra -- Trajectory model for tracing air transport phenomena
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: flextra Version : 5.0 Upstream Author : Andreas Stohl * URL : http://transport.nilu.no/flexpart * License : GPL Programming Lang: Fortran Description : Trajectory model for tracing air transport phenomena Trajectory models are important tools for studying transport phenomena in the atmosphere. In the environmental sciences, they are often used to establish source-receptor relationships of air pollutants. . FLEXTRA can be used to calculate different types of forward or backward trajectories, and has facilities to estimate the uncertainty of trajectories. It is specifically designed to compute long time sequences of trajectories for many receptor locations. . FLEXTRA may be used with the Metview meteorological workstation to visualize trajectories. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121120195100.20754.61898.report...@ailm.sceal.ie
Bug#693833: ITP: flexpart -- Particle Dispersion model for tracing air transport phenomena
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: flexpart Version : 90.02 Upstream Author : Andreas Stohl * URL : http://transport.nilu.no/flexpart * License : GPL Programming Lang: Fortran Description : Particle Dispersion model for tracing air transport phenomena The FLEXPART model is a Lagrangian Particle Dispersion Model developed at the Norwegian Institute for Air Research in the Department of Atmospheric and Climate Research. The model development team consists of Andreas Stohl (who originally wrote FLEXPART), Sabine Eckhardt, Harald Sodemann, and John Burkhart. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121120200939.20865.68819.report...@ailm.sceal.ie
Bug#693834: ITP: metview -- Interactive data visualization and analysis environment
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: metview Version : 4.3.4 Upstream Author : ECMWF http://www.ecmwf.int * URL : https://software.ecmwf.int/wiki/display/METV/Home * License : Apache Programming Lang: C++ Description : Interactive data visualization and analysis environment Metview has been designed as a flexible, modular and extendible system able to accommodate the evolving needs of the user. The system is based on the ECMWF standards for graphics (Magics) and data access (MARS) but can also access locally stored data. The user interface is based on Motif and Qt. Metview is a fully distributed system where modules can run on different workstations and servers. . Metview is a cooperative project between ECMWF and INPE/CPTEC, Brazil. ECMWF has also been assisted by a staff member of Météo-France. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121120201915.20930.7457.report...@ailm.sceal.ie
Bug#679237: ITP: ecflow -- Work flow controller for running programs based on time or dependencies
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: ecflow Version : 2.0.30 Upstream Author servic...@ecmwf.int * URL : http://software.ecmwf.int/wiki/display/ECFLOW/Home * License : Apache Programming Lang: python, C++ Description : Work flow controller for running programs based on time or dependencies ecFlow is a work flow package that enables users to run a large number of programs ( with dependencies on each other and on time) in a controlled environment. It provides reasonable tolerance for hardware and software failures, combined with good restart capabilities. ecFlow submits tasks(jobs) and receives acknowledgements from tasks when they change status and when they send events, using child commands embedded in the scripts. ecflow stores the relationship between tasks, and is able to submit tasks dependent on triggers. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120627111609.21401.26379.report...@ailm.sceal.ie
Bug#668596: iRODS 4 Debian -- any status update?
On 2012-06-25 14:34, Yaroslav Halchenko wrote: Hi Alastair, It was great to spot your ITP for iRODS. Having iRODS properly packaged and maintained in Debian would also benefit neuroinformatics people and thus we, NeuroDebian project (http://neuro.debian.net), are interested as well. Time permitting, we could help with packaging/maintainership, and provide backport builds of it for compatible Debian and Ubuntu releases from our NeuroDebian repository. are you going to maintain it alone, or under some dedicated or public (e.g. debian-science) team? Keep on great work, cheers! We're using it here locally at ICHEC (www.ichec.ie) for climate data. I'm hoping to get the clients packaged soon first but unlikely to get it in the next release of Debian (wheezy) as it is just about frozen and iRODS is not a small package - i'd expect to hit issues. My plan is to get an irods-client package thats got the irods clients first, then proceed to add more packages (from the same source) with the server, etc. have you a particular functionality that is a priority for you? regards Alastair -- Alastair McKinstry , alast...@sceal.ie , mckins...@debian.org http://blog.sceal.ie Anyone who believes exponential growth can go on forever in a finite world is either a madman or an economist - Kenneth Boulter, Economist. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4fe87476.30...@debian.org
Bug#669260: ITP: pygrib -- python library for reading/writing GRIB files
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: pygrib Version : 1.9.3 Upstream Author : Jeff Whittaker jeffrey.s.whita...@noaa.gov * URL : https://pygrib.googlecode.com/svn/trunk/docs/index.html * License : BSD Programming Lang: Python Description : python library for reading/writing GRIB files Python module for reading and writing GRIB (editions 1 and 2) files. GRIB is the World Meterological Organization standard for distributing gridded data. The module is a python interface to the GRIB API C library from the European Centre for Medium-Range Weather Forecasts (ECMWF). -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120418141137.12432.27567.report...@ailm.sceal.ie
Bug#668596: ITP: irods -- Data grid storage management system
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: irods Version : 3.1 Upstream Author : DICE research group * URL : http://www.irods.org/ * License : BSD Programming Lang: C Description : Data grid storage management system iRODS, the Integrated Rule-Oriented Data System, is a data grid software system developed by the Data Intensive Cyber Environments research group (developers of the SRB, the Storage Resource Broker), and collaborators. The iRODS system is based on expertise gained through a decade of applying the SRB technology in support of Data Grids, Digital Libraries, Persistent Archives, and Real-time Data Systems. iRODS management policies (sets of assertions these communities make about their digital collections) are characterized in iRODS Rules and state information. At the iRODS core, a Rule Engine interprets the Rules to decide how the system is to respond to various requests and conditions. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120413094422.25133.84455.report...@ailm.sceal.ie
Bug#668598: ITP: ecaccess -- clients to access ECMWF facilities
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: ecaccess Version : 4.0.0 Upstream Author : laurent.goug...@ecmwf.int * URL : http://www.ecmwf.int/services/ecaccess * License : Perl Artistic License Programming Lang: Perl Description : clients to access ECMWF facilities ecaccess is a suite of client tools to enable access to the computing and data archive facilities of the European Centre for Medium-Range Forecasts (ECMWF). . Strict authentication is performed in a uniform way using SecurID cards and standard (X509) certificates. SSL is used to guarantee the integrity of the application data, the transferred jobs and the monitoring information. Ã -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120413100553.25449.66742.report...@ailm.sceal.ie
Bug#660347: ITP: python-cdo -- python wrapper for CDO climate Data Operators
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: python-cdo Version : 1.5.4 Upstream Author : uwe.schulzwe...@zmaw.de * URL : https://code.zmaw.de/projects/cdo * License : GPL Programming Lang: python Description : python wrapper for CDO climate Data Operators Climate Data Operators are a collection of command line Operators to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available. This package provides a Python interface to CDO. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120218134559.28490.65199.report...@ailm.sceal.ie
Bug#650261: ITP: thredds -- Data server (middleware) for scientific data
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: thredds Version : 4.2.9 Upstream Author : UCAR * URL : http://www.unidata.ucar.edu/software/tds/ * License : MIT Programming Lang: Java Description : Data server (middleware) for scientific data The THREDDS Data Server (TDS) is a web server that provides metadata and data access for scientific datasets, using OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access protocols. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/2028104337.19678.78864.report...@ailm.sceal.ie
Bug#649690: ITP: metaconfig -- python ConfigParser bootstraping library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: metaconfig Version : 0.1.4a1 Upstream Author : Stephen Pascoe stephen.pas...@stfc.ac.uk * URL : http://pypi.python.org/pypi/metaconfig * License : BSD Programming Lang: Python Description : python ConfigParser bootstraping library Metaconfig is a library for centralising Python's ConfigParser files. It is inspired by the logging module where it is increadibly easy to start writing code that depends on logging whilst deferring how log messages will be handled until later. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/2023090511.21614.51443.report...@ailm.sceal.ie
Bug#649074: ITP: drslib -- python library for processing climate data with the Data Reference Syntax
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: drslib Version : 0.3.0a3 Upstream Author : Stephen Pascoe stephen.pas...@sftc.ac.uk * URL : http://esgf.org/esgf-drslib-site/ * License : BSD Programming Lang: Python Description : python library for processing climate data with the Data Reference Syntax Drslib is a Python library for processing the 5th Climate Model Intercomparison Project (CMIP5) Data Reference Syntax (DRS). It includes API-level code for working with DRS components, algorithms for decuding DRS components from incomplete information and a command-line tool for manipulating data files into the recommended DRS directory structure. It has been developed by the Centre for Environmental Data Archival as part of the ESG Federation. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/2017103315.9145.81739.report...@ailm.sceal.ie
Bug#646433: ITP: gadap -- GrADS support package for access to OpenDAP station data
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: gadap Version : 2.0 Upstream Author : Institute of Global Environment and Society (IGES) * URL : http://www.iges.org/grads/gadoc/supplibs.html * License : GPL Programming Lang: C++ Description : GrADS support package for access to in-situ OpenDAP data This package enables access to OpenDAP data via OpeNDAP for the GrADS climate data analysis package. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20111024091710.30317.45365.report...@ailm.sceal.ie
Bug#644586: ITP: exodusII -- Finite element analysis storage library
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: exodusII Version : 5.1 Upstream Author : Gregory Sjaardema gdsj...@users.sourceforge.net * URL : http://sourceforge.net/projects/exodusii/ * License : BSD Programming Lang: C Description : Finite element analysis storage library EXODUS II is a model developed to store and retrieve transient data for finite element analyses. It is used for preprocessing, postprocessing, as well as code to code data transfer. ExodusII is based on netcdf. Includes the nemesis parallel extension. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20111007080348.32380.81086.report...@ailm.sceal.ie
Bug#644096: ITP: vistrails -- Scientific visualisation workflow tool
Package: wnpp Severity: wishlist Owner: Alastair McKinstry mckins...@debian.org * Package name: vistrails Version : 2.0.alpha Upstream Author : U. of Utah cont...@vistrails.org * URL : http://www.vistrails.org * License : BSD Programming Lang: python Description : Scientific visualisation workflow tool VisTrails is an open-source scientific workflow and provenance management system developed at the University of Utah that provides support for data exploration and visualization. Whereas workflows have been traditionally used to automate repetitive tasks, for applications that are exploratory in nature, such as simulations, data analysis and visualization, very little is repeated---change is the norm. As an engineer or scientist generates and evaluates hypotheses about data under study, a series of different, albeit related, workflows are created while a workflow is adjusted in an interactive process. VisTrails was designed to manage these rapidly-evolving workflows. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20111002190205.21529.8880.report...@ailm.sceal.ie
Bug#641315: ITP: opendap -- Project for a Network Data Access Protocol
Hi, This is already packaged as libdap. regards Alastair On 2011-09-12 16:31, Mathieu Malaterre wrote: Package: wnpp Severity: wishlist Owner: Mathieu Malaterremathieu.malate...@gmail.com * Package name: opendap Version : 2.2 Upstream Author : OPeNDAP, Inc. * URL : http://www.opendap.org * License : LGPL Programming Lang: Java Description : Project for a Network Data Access Protocol OPeNDAP is a framework that simplifies all aspects of scientific data networking. . OPeNDAP provides software which makes local data accessible to remote locations regardless of local storage format. . OPeNDAP also provides tools for transforming existing applications into OPeNDAP clients (i.e., enabling them to remotely access OPeNDAP served data). -- Alastair McKinstry ,alast...@sceal.ie ,mckins...@debian.org http://blog.sceal.ie Anyone who believes exponential growth can go on forever in a finite world is either a madman or an economist - Kenneth Boulter, Economist. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4e6e28f5.2000...@sceal.ie
