Re: [O] CUSTOM_ID doesn't work for HTML export on Org trunk
Oleh Krehel ohwoeo...@gmail.com writes: It's not: I'm getting this in my Firefox address bar if I click the link: testorg.html#orgheadline1 What link? There is no link in your example. The code generated for headlines is correct. However, links indeed target internal reference instead of custom ID. I changed to behaviour so they prefer custom ID (b856f66892b8fbf827e4b4a3e89e739a9caca051). Thanks. Regards,
Re: [O] CUSTOM_ID doesn't work for HTML export on Org trunk
Hi Nicolas, Thanks for helping. Nicolas Goaziou m...@nicolasgoaziou.fr writes: The following buffer * Headline :PROPERTIES: :CUSTOM_ID: my-id :END: exports as div id=outline-container-orgheadline1 class=outline-2 h2 id=my-ida id=orgheadline1/aspan class=section-number-21/span Headline/h2 div class=outline-text-2 id=text-my-id /div /div I'm getting the same behavior. It looks correct. It's not: I'm getting this in my Firefox address bar if I click the link: testorg.html#orgheadline1 Here's the two months old export behavior: div id=outline-container-my-id class=outline-2 h2 id=my-ida id=sec-1/aspan class=section-number-21/span Headline/h2 div class=outline-text-2 id=text-my-id /div And the corresponding Firefox bar: testorg.html#my-id regards, Oleh
Re: [O] Possible cache problems
Hi Nicolas, On Sun, Jun 07, 2015 at 01:29:04AM +0200, Nicolas Goaziou wrote: Suvayu Ali fatkasuvayu+li...@gmail.com writes: I do not see anything happening. In the modeline I see OrgCacheD, so the mode is definitely enabled. However to enable it, I had to do one of these two: (setq ngz-debug-mode nil) (setq ngz-debug-mode t) My bad, it should be (define-minor-mode element-debug-mode Minor mode to debug Org Element cache. nil OrgCacheD nil (if element-debug-mode (progn (setq org-element-cache-sync-idle-time 3600) (add-hook 'after-change-functions 'element-check-cache t t)) (setq org-element-cache-sync-idle-time 0.6) (remove-hook 'after-change-functions 'element-check-cache t))) I got a message like the following one quite a few times. Partially completed == WARNING. Corrupted element (table-row) at 34386 Real: (table-row (:type standard :begin 34386 :end 34430 :contents-begin 34387 :contents-end 34429 :post-blank 0 :post-affiliated 34386 :parent (table (:begin 34327 :end 34431 :type org :tblfm nil :contents-begin 34342 :contents-end 34430 :value nil :post-blank 1 :post-affiliated 34342 :attr_latex () :parent nil Cached: (table-row (:type standard :begin 34386 :end 34430 :contents-begin 34387 :contents-end 34429 :post-blank 0 :post-affiliated 34386 :parent (table (:begin 34328 :end 34417 :type org :tblfm nil :contents-begin 34328 :contents-end 34416 :value nil :post-blank 1 :post-affiliated 34328 :parent nil Last request: [34926 34372 34328 14 (property-drawer (:begin 34276 :end 34328 :contents-begin 34294 :contents-end 34316 :post-blank 1 :post-affiliated 34276 :parent nil)) (table (:begin 34327 :end 34431 :type org :tblfm nil :contents-begin 34342 :contents-end 34430 :value nil :post-blank 1 :post-affiliated 34342 :attr_latex () :parent nil)) 2] I was trying to edit the attr_latex line for the following table: #+attr_latex: | year | 2012 | 2018 | 2022 | 2028 | 2035 | | γ(°) |7 |4 | 1.3 | 0.9 | 0.6 | Right now I'm not working with Org for a few days, but next week I'll start again. So maybe I'll get a few other data points soon. Cheers, -- Suvayu Open source is the future. It sets us free.
Re: [O] source block exported with tabs replacing spaces?
Alan Schmitt alan.schm...@polytechnique.org writes:
Hello,
I'm working on a presentation and I noticed that some of my source
blocks have spaces exported as tabs. Here is an example:
#+begin_src js :wrap center :results output :exports both
console.log((![]+[])[+!+[]]+
(![]+[])[!+[]+!+[]]+
(![]+[])[+!+[]]+
([][[]]+[])[+!+[]])
#+end_src
get exported to the following latex code
\begin{minted}[frame=lines,fontsize=\scriptsize]{js}
console.log((![]+[])[+!+[]]+
(![]+[])[!+[]+!+[]]+
(![]+[])[+!+[]]+
([][[]]+[])[+!+[]])
\end{minted}
(Note the tabs instead of the 8 spaces). I have `indent-tabs-mode' set
to nil in both the file and the exporter setting (I'm using the
asynchronous exporter with a specified file).
How can I tell org to preserve the spaces?
This might not be org, but minted in LaTex which is formating the code
blocks. I would look there if there is an option to disable the
replacement of tabs with strings.
Cheers,
Rainer
Thanks,
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D):+49 - (0)3 21 21 25 22 44
email: rai...@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
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Description: PGP signature
Re: [O] org-tree-to-indirect-buffer - naming and prefix in define keyboard key
Alan Schmitt alan.schm...@polytechnique.org writes: On 2015-06-09 10:36, Rainer M Krug rai...@krugs.de writes: While writing this, I discovered the C-u prefix to keep the last opened indirect buffer open. But I still have two question: 1) How can I map the command C-u M-x ~org-tree-to-indirect-buffer~ to a keyboard shortcut? According to http://ergoemacs.org/emacs/elisp_universal_argument.html the universal argument corresponds to an argument '(4). So you could try: #+begin_src emacs-lisp (global-set-key (kbd f8) (lambda () (interactive) (org-tree-to-indirect-buffer '(4 #+end_src Thanks - works perfectly. I just used #+begin_src emacs-lisp (define-key org-mode-map \C-ci (lambda () (interactive) (org-tree-to-indirect-buffer '(4 #+end_src as it only makes sense in org files (or can I use it in other files as well?). 2) Can I change the naming of the indirect buffer? To prefix the .org buffer name makes sense, but is cluttering my tabbar (yes - I still use it) - so I would prefer to simply use the name of the subtree. The buffer name is set by the function `org-get-indirect-buffer'. You could try to change the name after calling the function … for instance by doing #+begin_src emacs-lisp (rename-buffer (org-get-heading) t) #+end_src (the t at the end makes sure the name is unique), but for this to work you need to go to the buffer that was just created, and I don't know how to do that. Thanks - I will look into this and post a new question. Thanks a lot, Rainer Alan -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D):+49 - (0)3 21 21 25 22 44 email: rai...@krugs.de Skype: RMkrug PGP: 0x0F52F982 signature.asc Description: PGP signature
Re: [O] CUSTOM_ID doesn't work for HTML export on Org trunk
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Oleh Krehel ohwoeo...@gmail.com writes: It's not: I'm getting this in my Firefox address bar if I click the link: testorg.html#orgheadline1 What link? There is no link in your example. The link to the headline in the table of contents. The code generated for headlines is correct. However, links indeed target internal reference instead of custom ID. I changed to behaviour so they prefer custom ID (b856f66892b8fbf827e4b4a3e89e739a9caca051). This solves the problem for me, thanks. Oleh
[O] How to activate (and rename) new org-tree-to-indirect-buffer buffer?
Hi Thanks to Alan Schmitt, I managed to bind C-u M-x ~org-tree-to-indirect-buffer~ but I would now like to activate and rename the new buffer. He suggested that ~(rename-buffer (org-get-heading) t)~ would rename the buffer, but it needs to be activated first. My question: how can I activate this new buffer? Along this line, it seems a little bit counter-intuitive that the new indirect buffer is *not* activated, as it is the case when editing source code blocks. The ideal solution probably would be to add this to the function, depending on a new configuration variable ~org-tree-to-indirect-buffer-activate~ which can be either nil : as it is now (the default) b : new buffer not activated B : new buffer is activated possibly even f : new buffer in new frame and *not* activated F : new buffer in new frame and activated Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D):+49 - (0)3 21 21 25 22 44 email: rai...@krugs.de Skype: RMkrug PGP: 0x0F52F982 signature.asc Description: PGP signature
[O] source block exported with tabs replacing spaces?
Hello,
I'm working on a presentation and I noticed that some of my source
blocks have spaces exported as tabs. Here is an example:
#+begin_src js :wrap center :results output :exports both
console.log((![]+[])[+!+[]]+
(![]+[])[!+[]+!+[]]+
(![]+[])[+!+[]]+
([][[]]+[])[+!+[]])
#+end_src
get exported to the following latex code
\begin{minted}[frame=lines,fontsize=\scriptsize]{js}
console.log((![]+[])[+!+[]]+
(![]+[])[!+[]+!+[]]+
(![]+[])[+!+[]]+
([][[]]+[])[+!+[]])
\end{minted}
(Note the tabs instead of the 8 spaces). I have `indent-tabs-mode' set
to nil in both the file and the exporter setting (I'm using the
asynchronous exporter with a specified file).
How can I tell org to preserve the spaces?
Thanks,
--
OpenPGP Key ID : 040D0A3B4ED2E5C7
Weekly CO₂ average (2015-05-30, Mauna Loa Observatory): 403.41 ppm
signature.asc
Description: PGP signature
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
Windy, I am a researcher (not in academia, but in a government lab). I use emacs and org-mode a lot, for project management, programming (using R and GRASS), writing papers, keeping notes, etc.etc. I find that collaborative writing is problematic because most people use Word, and in most cases will not become enlightened and use emacs. I have used two strategies. a) I first write in org-mode. Export to Word, either exporting first to ODT and then to Word, or to LaTex and then use pandoc to convert LaTex to Word. My coauthor can edit the document as he wishes, using the Track changes option. Then, I transcribe their edits back into the org-mode document. Advantage of this approach: your coauthor receives a clean word file, that could include figures, references, etc., and he/she uses the tools she likes to edit the file. Disadvantage: you have to manually incorporate the changes to the org-mode file each time there are edits. b) I write the manuscript in org-mode. Then I send the org-mode file to my coauthor. Because the org-mode file is just a text file, my coauthor can use Word to edit it. I ask him/her *not* to use track changes and to save the edited version also as a text file. Then, when I receive it I use ediff in emacs to compare both documents and incorporate the edits I want. Advantage of this approach: the merging of the documents is easy using ediff. Disadvantage: your coauthor has to edit a weird-looking document, with markup, code blocks, etc. All the best, Julian Speaking as an advisor/teacher, you should do what they want if you want them to help you. You could ask if they are willing to comment on the pdf, either by hand writing on a printed version, or by pdf commenting, or maybe in the LaTeX source. But, if that is not what they want, and they cannot work with what you give them, you will not get as much feedback as you want, and you will end up creating frustration on your end and theirs. windy writes: Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? 在2015年06月09 21时21分, John Kitchinjkitc...@andrew.cmu.edu写道: you might also enjoy our youtube video: https://www.youtube.com/watch?v=fgizHHd7nOo And this one on using org-mode in teaching: https://www.youtube.com/watch?v=IsSMs-4GlT8list=FLQp2VLAOlvq142YN3JO3y8w and https://www.youtube.com/watch?v=cRUCiF2MwP4 See http://github.com/jkitchin/jmax for my Emacs setup for org-mode. My only other advice is start learning to program in emacs-lisp. It took me about four years to get proficient enough to write org-ref. I learned by solving lots of little problems, and building up to bigger problems. A lot of those are documented in my blog. Read the emacs and emacs-lisp manuals (read them in Emacs or in a browser). They take some time, so skip the stuff that doesn't make sense and come back to it later if you need to. Consider getting the book at https://www.masteringemacs.org. It isn't about org-mode, but it will make you better at using Emacs. Consider reading Land of Lisp. It isn't about Emacs or Emacs-lisp, but it might interest you in programming in a lispy language, and it is a fun read. Buy the org-mode book: http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8qid=1433855847sr=8-1keywords=org-mode. yes, it is the same stuff as in the manual, but it is a book you can read anywhere anytime. Start by learning how to get org-mode to do some things you want. Just do one thing a day. Every day. You hopefully have 30+ years of career ahead of you, so even if it takes a few years or more to learn how to program in emacs-lisp to customize your workflows, you still have plenty of time to benefit from it! Best wishes, Holger Wenzel writes: Hi Xebar, Xebar Saram zeltakc at gmail.com writes: Dear Martin Thanks so much for your prompt response. I did ofc do an extensive google research yet found that as can be seen in your link most entries focus on either writing papers or general bits an pieces .What i am looking for is a holistic approach regarding organizing all aspects of academic life and to hear workflows of other colleagues using org for that I'd start with: http://kitchingroup.cheme.cmu.edu/blog/2014/08/08/What-we-are-using-org- mode-for/ follow John Kitchin's blog there closely and read everything he posts in this list. Cheers, Holger z On Tue, Jun 9, 2015 at 12:16 AM, M Elwood151 at web.de wrote: Von: Xebar Saram zeltakc at gmail.com Datum: Mon, 8 Jun 2015 19:39:14 +0300 An: org mode emacs-orgmode at gnu.org Betreff: [O] Organizing and taming hectic Academia work (faculty
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
Speaking as an advisor/teacher, you should do what they want if you want them to help you. You could ask if they are willing to comment on the pdf, either by hand writing on a printed version, or by pdf commenting, or maybe in the LaTeX source. But, if that is not what they want, and they cannot work with what you give them, you will not get as much feedback as you want, and you will end up creating frustration on your end and theirs. windy writes: Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? 在2015年06月09 21时21分, John Kitchinjkitc...@andrew.cmu.edu写道: you might also enjoy our youtube video: https://www.youtube.com/watch?v=fgizHHd7nOo And this one on using org-mode in teaching: https://www.youtube.com/watch?v=IsSMs-4GlT8list=FLQp2VLAOlvq142YN3JO3y8w and https://www.youtube.com/watch?v=cRUCiF2MwP4 See http://github.com/jkitchin/jmax for my Emacs setup for org-mode. My only other advice is start learning to program in emacs-lisp. It took me about four years to get proficient enough to write org-ref. I learned by solving lots of little problems, and building up to bigger problems. A lot of those are documented in my blog. Read the emacs and emacs-lisp manuals (read them in Emacs or in a browser). They take some time, so skip the stuff that doesn't make sense and come back to it later if you need to. Consider getting the book at https://www.masteringemacs.org. It isn't about org-mode, but it will make you better at using Emacs. Consider reading Land of Lisp. It isn't about Emacs or Emacs-lisp, but it might interest you in programming in a lispy language, and it is a fun read. Buy the org-mode book: http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8qid=1433855847sr=8-1keywords=org-mode. yes, it is the same stuff as in the manual, but it is a book you can read anywhere anytime. Start by learning how to get org-mode to do some things you want. Just do one thing a day. Every day. You hopefully have 30+ years of career ahead of you, so even if it takes a few years or more to learn how to program in emacs-lisp to customize your workflows, you still have plenty of time to benefit from it! Best wishes, Holger Wenzel writes: Hi Xebar, Xebar Saram zeltakc at gmail.com writes: Dear Martin Thanks so much for your prompt response. I did ofc do an extensive google research yet found that as can be seen in your link most entries focus on either writing papers or general bits an pieces .What i am looking for is a holistic approach regarding organizing all aspects of academic life and to hear workflows of other colleagues using org for that I'd start with: http://kitchingroup.cheme.cmu.edu/blog/2014/08/08/What-we-are-using-org- mode-for/ follow John Kitchin's blog there closely and read everything he posts in this list. Cheers, Holger z On Tue, Jun 9, 2015 at 12:16 AM, M Elwood151 at web.de wrote: Von: Xebar Saram zeltakc at gmail.com Datum: Mon, 8 Jun 2015 19:39:14 +0300 An: org mode emacs-orgmode at gnu.org Betreff: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :) Hi all Im a young assistant professor (in humanities and thus my horrific coding skills..basically non ) and having been using orgmode for a year or two now. I love orgmode dearly and use it mainly for note taking, lists etc I am aware of the fantastic orgmode capabilities that could benefit me greatly such as exporting, email tie-ins, beamer support, organizing my bibliography (i have switched to a .bib file recently for my references), agenda capabilities and so much moreand have tried several of these with mild success. unfortunately (and this maybe due to me not being very technical and lack of coding skills) i still feel like im really not using orgmode to its potential and still feel miserably lost in terms of organizing my work in academia from all aspects. i am looking for 2 things really: 1. as i said in the post topic a good guide if anyone is aware of or detailed examples of using org in Academia (mainly aimed at faculty :)) 2. related to that as a young researcher with multiple students, paper writing, grant applications, department duties, endless TODOS, endless email i would really be grateful for even non org specific tips on how other people organize all this to make life more..well..organized :) thanks alot in advance and sorry for the long mail best Z Dear Xebar, I think the first 10 results of the correspondindg google search already show some very interesting
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
I found a happy medium working in Org, exporting to LaTeX, and then using Pandoc to convert to Word. I would send the Word and always the canonical PDF version in case some equations got messed up. This requires manually incorporating the tracked changes from Word, but I've never been a fan of just clicking accept on changes anyway, and don't mind the manual re-integration of comments. -k. On 2015-06-10 at 09:49, John Kitchin jkitc...@andrew.cmu.edu wrote: Speaking as an advisor/teacher, you should do what they want if you want them to help you. You could ask if they are willing to comment on the pdf, either by hand writing on a printed version, or by pdf commenting, or maybe in the LaTeX source. But, if that is not what they want, and they cannot work with what you give them, you will not get as much feedback as you want, and you will end up creating frustration on your end and theirs. windy writes: Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? 在2015年06月09 21时21分, John Kitchinjkitc...@andrew.cmu.edu写道: you might also enjoy our youtube video: https://www.youtube.com/watch?v=fgizHHd7nOo And this one on using org-mode in teaching: https://www.youtube.com/watch?v=IsSMs-4GlT8list=FLQp2VLAOlvq142YN3JO3y8w and https://www.youtube.com/watch?v=cRUCiF2MwP4 See http://github.com/jkitchin/jmax for my Emacs setup for org-mode. My only other advice is start learning to program in emacs-lisp. It took me about four years to get proficient enough to write org-ref. I learned by solving lots of little problems, and building up to bigger problems. A lot of those are documented in my blog. Read the emacs and emacs-lisp manuals (read them in Emacs or in a browser). They take some time, so skip the stuff that doesn't make sense and come back to it later if you need to. Consider getting the book at https://www.masteringemacs.org. It isn't about org-mode, but it will make you better at using Emacs. Consider reading Land of Lisp. It isn't about Emacs or Emacs-lisp, but it might interest you in programming in a lispy language, and it is a fun read. Buy the org-mode book: http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8qid=1433855847sr=8-1keywords=org-mode. yes, it is the same stuff as in the manual, but it is a book you can read anywhere anytime. Start by learning how to get org-mode to do some things you want. Just do one thing a day. Every day. You hopefully have 30+ years of career ahead of you, so even if it takes a few years or more to learn how to program in emacs-lisp to customize your workflows, you still have plenty of time to benefit from it! Best wishes, Holger Wenzel writes: Hi Xebar, Xebar Saram zeltakc at gmail.com writes: Dear Martin Thanks so much for your prompt response. I did ofc do an extensive google research yet found that as can be seen in your link most entries focus on either writing papers or general bits an pieces .What i am looking for is a holistic approach regarding organizing all aspects of academic life and to hear workflows of other colleagues using org for that I'd start with: http://kitchingroup.cheme.cmu.edu/blog/2014/08/08/What-we-are-using-org- mode-for/ follow John Kitchin's blog there closely and read everything he posts in this list. Cheers, Holger z On Tue, Jun 9, 2015 at 12:16 AM, M Elwood151 at web.de wrote: Von: Xebar Saram zeltakc at gmail.com Datum: Mon, 8 Jun 2015 19:39:14 +0300 An: org mode emacs-orgmode at gnu.org Betreff: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :) Hi all Im a young assistant professor (in humanities and thus my horrific coding skills..basically non ) and having been using orgmode for a year or two now. I love orgmode dearly and use it mainly for note taking, lists etc I am aware of the fantastic orgmode capabilities that could benefit me greatly such as exporting, email tie-ins, beamer support, organizing my bibliography (i have switched to a .bib file recently for my references), agenda capabilities and so much moreand have tried several of these with mild success. unfortunately (and this maybe due to me not being very technical and lack of coding skills) i still feel like im really not using orgmode to its potential and still feel miserably lost in terms of organizing my work in academia from all aspects. i am looking for 2 things really: 1. as i said in the post topic a good guide if anyone is aware of or detailed examples of using org in Academia (mainly aimed at faculty :))
Re: [O] source block exported with tabs replacing spaces?
On Wed, 10 Jun 2015, Alan Schmitt wrote:
Hello,
I'm working on a presentation and I noticed that some of my source
blocks have spaces exported as tabs. Here is an example:
#+begin_src js :wrap center :results output :exports both
console.log((![]+[])[+!+[]]+
(![]+[])[!+[]+!+[]]+
(![]+[])[+!+[]]+
([][[]]+[])[+!+[]])
#+end_src
get exported to the following latex code
\begin{minted}[frame=lines,fontsize=\scriptsize]{js}
console.log((![]+[])[+!+[]]+
(![]+[])[!+[]+!+[]]+
(![]+[])[+!+[]]+
([][[]]+[])[+!+[]])
\end{minted}
(Note the tabs instead of the 8 spaces). I have `indent-tabs-mode' set
to nil in both the file and the exporter setting (I'm using the
asynchronous exporter with a specified file).
How can I tell org to preserve the spaces?
Customize `org-src-preserve-indentation'
HTH,
Chuck
Re: [O] Fwd: Patch - Org Mac Outlook - Fix Call to Outlook in some cases
On 2015-06-09 22:20, Mike McLean mike.mcl...@pobox.com writes: Here is a version of the patch with a (hopefully) correct Changelog format Applied and pushed, thanks! Alan -- OpenPGP Key ID : 040D0A3B4ED2E5C7 Weekly CO₂ average (2015-05-30, Mauna Loa Observatory): 403.41 ppm signature.asc Description: PGP signature
Re: [O] source block exported with tabs replacing spaces?
On 2015-06-10 14:43, Rainer M Krug rai...@krugs.de writes: This might not be org, but minted in LaTex which is formating the code blocks. I would look there if there is an option to disable the replacement of tabs with strings. Thank you for the suggestion, but the tex that is generated has the tabs (before minted has a chance to see it). So it seems they are introduced when going from org to tex. Alan -- OpenPGP Key ID : 040D0A3B4ED2E5C7 Weekly CO₂ average (2015-05-30, Mauna Loa Observatory): 403.41 ppm signature.asc Description: PGP signature
Re: [O] How to open Link in Heading in Agenda without mouse click?
Von: Nick Dokos ndo...@gmail.com Datum: Mon, 08 Jun 2015 12:25:37 -0400 An: emacs-orgmode@gnu.org Betreff: Re: [O] How to open Link in Heading in Agenda without mouse click? Martin Beck elwood...@web.de writes: Hi, I'd like to create an agenda view which gives me quick access to important directories and files. So I set up an org-mode file with those hyperlinks and created an agenda which collects all headings in there. However if I try to use it, I did not find a way to open the hyperlinks in the agenda view without the mouse. Example headline: * Link to important file [[file+sys:\\server\dir\filename.mm][Mindmap]] [2015-06-08 Mo 10:34] Which command can I use to open the link/linked file directly in the agenda view? Is there a standard keybinding for it? Doesn't C-c C-o (which should be bound to org-agenda-open-link in the agenda buffer) work? Nick Hi Nick, thank you so much! I had tried that but stumbled upon a feature which confused me (and let it look as if it did not work): If there are more than one hyperlinks below the heading, I get a selection buffers which offers me to select which one to open. :-) That's really even greater than expected! Works perfectly. Kind regards MArtin
Re: [O] source block exported with tabs replacing spaces?
Envoyé de mon iPhone Le 10 juin 2015 à 21:48, Alan Schmitt alan.schm...@polytechnique.org a écrit : On 2015-06-10 14:43, Rainer M Krug rai...@krugs.de writes: This might not be org, but minted in LaTex which is formating the code blocks. I would look there if there is an option to disable the replacement of tabs with strings. Thank you for the suggestion, but the tex that is generated has the tabs (before minted has a chance to see it). So it seems they are introduced when going from org to tex. True - haven't thought about that the formatting from tex is happening later. Cheers, Rainer Alan -- OpenPGP Key ID : 040D0A3B4ED2E5C7 Weekly CO₂ average (2015-05-30, Mauna Loa Observatory): 403.41 ppm
Re: [O] source block exported with tabs replacing spaces?
On 2015-06-10 16:36, Charles C. Berry ccbe...@ucsd.edu writes: On Wed, 10 Jun 2015, Alan Schmitt wrote: How can I tell org to preserve the spaces? Customize `org-src-preserve-indentation' Thank you, this was it. I searched the manual for tabs and tabulations, I should have searched for whitespace. Alan -- OpenPGP Key ID : 040D0A3B4ED2E5C7 Weekly CO₂ average (2015-05-30, Mauna Loa Observatory): 403.41 ppm signature.asc Description: PGP signature
[O] Unable to reuse the result of a cached function call as argument of a gnuplot call
Hi all !
First, I would like to thank the org-mode community for the great fun I'm
having with babel. Unfortunately, I'm currently stumped by what appears to
be a bug (or unhandled corner-case).
Here is a org-mode style write-up to describe the problem :
* Versions
#+BEGIN_SRC elisp
(org-version)
#+END_SRC
#+RESULTS:
: 8.3beta
#+BEGIN_SRC elisp
(emacs-version)
#+END_SRC
#+RESULTS:
: GNU Emacs 24.3.50.1 (x86_64-pc-linux-gnu, GTK+ Version 3.8.6)
: of 2014-01-01 on prometheus, modified by Debian
* Minimal (!) example
Defining a function, I'll want to use the result of a _cached_ call as
an arg to a a gnuplot function.
#+name: fun
#+BEGIN_SRC sh :var nb=10 :results output
seq $(( ${nb} * 2 )) | paste - -
#+END_SRC
First a regular call, to show that I'll be able to reuse the result of
this call.
#+name: my-call
#+call: fun[:results table](nb=5)
#+RESULTS: my-call
| 1 | 2 |
| 3 | 4 |
| 5 | 6 |
| 7 | 8 |
| 9 | 10 |
Now a cached call.
#+name: my-call-cached
#+call: fun[:results table](nb=5) :cache yes
#+RESULTS[f2b650eb5296f72a1f7237c2a65b7fb3443acf5f]: my-call-cached
| 1 | 2 |
| 3 | 4 |
| 5 | 6 |
| 7 | 8 |
| 9 | 10 |
Dummy data that I only use as default value for the gnuplot function
definition.
#+name:dummy-data
| 1 | 2 |
#+name: plotting
#+begin_src gnuplot :var data=dummy-data my_title=dummy title :file dummy.png
set title my_title
plot data
#+end_src
#+RESULTS: plotting
[[file:dummy.png]]
I can call the gnuplot function on the result of the uncached call :
#+name: plot-result
#+call: plotting[:file result-call.png](data= my-call) :results file
#+RESULTS: plot-result
[[file:result-call.png]]
#+BEGIN_SRC sh :results output
file result-call.png
#+END_SRC
#+RESULTS:
: result-call.png: PNG image data, 640 x 480, 8-bit colormap, non-interlaced
But if I try to use the cached call :
#+name: plot-result-cached
#+call: plotting[:file result-call-cached.png](data= my-call-cached)
:results file
#+RESULTS: plot-result-cached
[[file:result-call-cached.png]]
#+BEGIN_SRC sh
file result-call-cached.png
#+END_SRC
#+RESULTS:
: result-call-cached.png: empty
* gnuplot console
Working gnuplot invocation had :
#+BEGIN_EXAMPLE
gnuplot data = /tmp/babel-262957O1/gnuplot-26295F9G
#+END_EXAMPLE
Failed invocation on result of a cached call had :
#+BEGIN_EXAMPLE
gnuplot data = ((1 2) (3 4) (5 6) (7 8) (9 10))
gnuplot set term png
Terminal type set to 'png'
Options are 'nocrop font
/usr/share/fonts/truetype/liberation/LiberationSans-Regular.ttf,12
fontscale 1.0 size 640,480 '
gnuplot set output result-call-cached.png
gnuplot set title my_title
gnuplot plot data
warning: Skipping unreadable file ((1 2) (3 4) (5 6) (7 8) (9 10))
No data in plot
#+END_EXAMPLE
* References
[[https://lists.gnu.org/archive/html/emacs-orgmode/2010-10/msg01379.html][message
on arg passing to gnuplot]]
[[http://emacs.stackexchange.com/a/12690/8545][stackexchange answer pointing
to the implementation of the results of named function calls as arguments]]
Thank you very much if a fix is possible (I really need to cache the very
expensive function calls of my real use-case, but I should be able to make a
cheap uncached identity function before the gnuplot invocation as a workaround).
Best Regards,
Bernard
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
On Wednesday, 10 Jun 2015 at 09:57, windy wrote: Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? As John has already said, go with the flow and use whatever system your teacher prefers... The students in my group quickly learn that they get more useful feedback from me if they give me LaTeX or org files instead of Word! It's not because I wish to penalise them, of course. It's that I don't have Word so I get them to give me PDF to ensure the maths come through properly (libreoffice is not particularly good when it comes to mathematics). I only end up commenting indirectly on any document they give me. On the other hand, if they give me LaTeX or org, I comment directly within their documents and/or suggest changes when appropriate. -- : Eric S Fraga (0xFFFCF67D), Emacs 25.0.50.1, Org release_8.3beta-1147-g0e5069.dirty
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
On 2015-06-10 Wed 07:14, Ken Mankoff wrote: I found a happy medium working in Org, exporting to LaTeX, and then using Pandoc to convert to Word. With ox-pandoc you can export to .docx directly. No need to go through LaTeX. Ox-pandoc is pretty amazing. Titus I would send the Word and always the canonical PDF version in case some equations got messed up. This requires manually incorporating the tracked changes from Word, but I've never been a fan of just clicking accept on changes anyway, and don't mind the manual re-integration of comments. -k. On 2015-06-10 at 09:49, John Kitchin jkitc...@andrew.cmu.edu wrote: Speaking as an advisor/teacher, you should do what they want if you want them to help you. You could ask if they are willing to comment on the pdf, either by hand writing on a printed version, or by pdf commenting, or maybe in the LaTeX source. But, if that is not what they want, and they cannot work with what you give them, you will not get as much feedback as you want, and you will end up creating frustration on your end and theirs. windy writes: Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? 在2015年06月09 21时21分, John Kitchinjkitc...@andrew.cmu.edu写道: you might also enjoy our youtube video: https://www.youtube.com/watch?v=fgizHHd7nOo And this one on using org-mode in teaching: https://www.youtube.com/watch?v=IsSMs-4GlT8list=FLQp2VLAOlvq142YN3JO3y8w and https://www.youtube.com/watch?v=cRUCiF2MwP4 See http://github.com/jkitchin/jmax for my Emacs setup for org-mode. My only other advice is start learning to program in emacs-lisp. It took me about four years to get proficient enough to write org-ref. I learned by solving lots of little problems, and building up to bigger problems. A lot of those are documented in my blog. Read the emacs and emacs-lisp manuals (read them in Emacs or in a browser). They take some time, so skip the stuff that doesn't make sense and come back to it later if you need to. Consider getting the book at https://www.masteringemacs.org. It isn't about org-mode, but it will make you better at using Emacs. Consider reading Land of Lisp. It isn't about Emacs or Emacs-lisp, but it might interest you in programming in a lispy language, and it is a fun read. Buy the org-mode book: http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8qid=1433855847sr=8-1keywords=org-mode. yes, it is the same stuff as in the manual, but it is a book you can read anywhere anytime. Start by learning how to get org-mode to do some things you want. Just do one thing a day. Every day. You hopefully have 30+ years of career ahead of you, so even if it takes a few years or more to learn how to program in emacs-lisp to customize your workflows, you still have plenty of time to benefit from it! Best wishes, Holger Wenzel writes: Hi Xebar, Xebar Saram zeltakc at gmail.com writes: Dear Martin Thanks so much for your prompt response. I did ofc do an extensive google research yet found that as can be seen in your link most entries focus on either writing papers or general bits an pieces .What i am looking for is a holistic approach regarding organizing all aspects of academic life and to hear workflows of other colleagues using org for that I'd start with: http://kitchingroup.cheme.cmu.edu/blog/2014/08/08/What-we-are-using-org- mode-for/ follow John Kitchin's blog there closely and read everything he posts in this list. Cheers, Holger z On Tue, Jun 9, 2015 at 12:16 AM, M Elwood151 at web.de wrote: Von: Xebar Saram zeltakc at gmail.com Datum: Mon, 8 Jun 2015 19:39:14 +0300 An: org mode emacs-orgmode at gnu.org Betreff: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :) Hi all Im a young assistant professor (in humanities and thus my horrific coding skills..basically non ) and having been using orgmode for a year or two now. I love orgmode dearly and use it mainly for note taking, lists etc I am aware of the fantastic orgmode capabilities that could benefit me greatly such as exporting, email tie-ins, beamer support, organizing my bibliography (i have switched to a .bib file recently for my references), agenda capabilities and so much moreand have tried several of these with mild success. unfortunately (and this maybe due to me not being very technical and lack of coding skills) i still feel like im really not using orgmode to its potential and still feel miserably lost in terms of organizing my work in academia from all aspects. i am
Re: [O] Possible cache problems
Suvayu Ali fatkasuvayu+li...@gmail.com writes: I got a message like the following one quite a few times. Partially completed == WARNING. Corrupted element (table-row) at 34386 I wonder if this is the same bug that I've been seeing: http://thread.gmane.org/gmane.emacs.orgmode/92883/focus=92884 Rasmus -- However beautiful the theory, you should occasionally look at the evidence
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
windy chxp_m...@163.com writes: My teacher let me give a DOC version for that only me use the emacs in our lab (So lonely, DOC dominate the most people). You should see if you can at least upgrade to docx. In my experience, LO writes much better docx than doc (e.g. when using doc math is downsampled to images losing a lot of quality). I finnally export as ODT and change into DOC version, it seems works well for that only no reference generate. Wish a more wisdom ODT exporter in org-mode. Bibtex is a big problem when export into different format files. ATM I think the a lot of people use John's org-ref. For this problem I've used a home-grown org-cite.el that uses reftex.el to format citations in author-year style. I generate the final bibliography via tex4ht and merge the two documents in an odm. This is easy with a Makefile. Later, probably after 8.3, we'll try to include citation support in Org. Rasmus -- The second rule of Fight Club is: You do not talk about Fight Club
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
Titus von der Malsburg malsb...@posteo.de writes: On 2015-06-10 Wed 07:14, Ken Mankoff wrote: I found a happy medium working in Org, exporting to LaTeX, and then using Pandoc to convert to Word. With ox-pandoc you can export to .docx directly. No need to go through LaTeX. Ox-pandoc is pretty amazing. Out of curiosity, why is it preferable to go via pandoc instead of ox-odt? Rasmus -- Bang bang
Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)
Thanks for all you reply, My teacher let me give a DOC version for that only me use the emacs in our lab (So lonely, DOC dominate the most people). I finnally export as ODT and change into DOC version, it seems works well for that only no reference generate. Wish a more wisdom ODT exporter in org-mode. Bibtex is a big problem when export into different format files. 在2015年06月10 22时16分, Julian Burgosjul...@hafro.is写道: Windy, I am a researcher (not in academia, but in a government lab). I use emacs and org-mode a lot, for project management, programming (using R and GRASS), writing papers, keeping notes, etc.etc. I find that collaborative writing is problematic because most people use Word, and in most cases will not become enlightened and use emacs. I have used two strategies. a) I first write in org-mode. Export to Word, either exporting first to ODT and then to Word, or to LaTex and then use pandoc to convert LaTex to Word. My coauthor can edit the document as he wishes, using the Track changes option. Then, I transcribe their edits back into the org-mode document. Advantage of this approach: your coauthor receives a clean word file, that could include figures, references, etc., and he/she uses the tools she likes to edit the file. Disadvantage: you have to manually incorporate the changes to the org-mode file each time there are edits. b) I write the manuscript in org-mode. Then I send the org-mode file to my coauthor. Because the org-mode file is just a text file, my coauthor can use Word to edit it. I ask him/her *not* to use track changes and to save the edited version also as a text file. Then, when I receive it I use ediff in emacs to compare both documents and incorporate the edits I want. Advantage of this approach: the merging of the documents is easy using ediff. Disadvantage: your coauthor has to edit a weird-looking document, with markup, code blocks, etc. All the best, Julian Speaking as an advisor/teacher, you should do what they want if you want them to help you. You could ask if they are willing to comment on the pdf, either by hand writing on a printed version, or by pdf commenting, or maybe in the LaTeX source. But, if that is not what they want, and they cannot work with what you give them, you will not get as much feedback as you want, and you will end up creating frustration on your end and theirs. windy writes: Another question, I am a student , I think it is a big problem that how to exchange you article with your teacher, because the teacher will comment or revise your article once again and again. However, Many teachers will not use emacs to write articles and also the pdf file is not so convenient to do some modification, how will you deal with the problem ? 在2015年06月09 21时21分, John Kitchinjkitc...@andrew.cmu.edu写道: you might also enjoy our youtube video: https://www.youtube.com/watch?v=fgizHHd7nOo And this one on using org-mode in teaching: https://www.youtube.com/watch?v=IsSMs-4GlT8list=FLQp2VLAOlvq142YN3JO3y8w and https://www.youtube.com/watch?v=cRUCiF2MwP4 See http://github.com/jkitchin/jmax for my Emacs setup for org-mode. My only other advice is start learning to program in emacs-lisp. It took me about four years to get proficient enough to write org-ref. I learned by solving lots of little problems, and building up to bigger problems. A lot of those are documented in my blog. Read the emacs and emacs-lisp manuals (read them in Emacs or in a browser). They take some time, so skip the stuff that doesn't make sense and come back to it later if you need to. Consider getting the book at https://www.masteringemacs.org. It isn't about org-mode, but it will make you better at using Emacs. Consider reading Land of Lisp. It isn't about Emacs or Emacs-lisp, but it might interest you in programming in a lispy language, and it is a fun read. Buy the org-mode book: http://www.amazon.com/Org-Mode-Reference-Manual-Organize/dp/9881327709/ref=sr_1_1?ie=UTF8qid=1433855847sr=8-1keywords=org-mode. yes, it is the same stuff as in the manual, but it is a book you can read anywhere anytime. Start by learning how to get org-mode to do some things you want. Just do one thing a day. Every day. You hopefully have 30+ years of career ahead of you, so even if it takes a few years or more to learn how to program in emacs-lisp to customize your workflows, you still have plenty of time to benefit from it! Best wishes, Holger Wenzel writes: Hi Xebar, Xebar Saram zeltakc at gmail.com writes: Dear Martin Thanks so much for your prompt response. I did ofc do an extensive google research yet found that as can be seen in your link most entries focus on either writing papers or general bits an pieces .What i am looking for is a holistic approach regarding organizing all aspects of academic life and to hear workflows of other colleagues using org for that I'd start with:
