[Fink-users] vim-7.4.1952.tar.bz2 not found

2016-06-28 Thread Dominique Dhumieres
I am unable to update vim to 7.4.1952 because vim-7.4.1952.tar.bz2 is not found.

TIA

Dominique

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[Fink-users] Failed: phase installing: qt5-mac-doc-5.6.0-1 failed

2016-04-17 Thread Dominique Dhumieres
Updating to qt5-mac-doc-5.6.0-1 failed on

Package manager version: 0.39.3
Distribution version: selfupdate-rsync Sun Apr 17 16:59:24 2016, 10.11, x86_64
Trees: local/main stable/main stable/crypto local/injected
Xcode.app: 7.3
Xcode command-line tools: 7.3.0.0.1.1457485338
qt5-mac-doc-5.6.0-1 is set to build with only one job.

with

...
Installing qtwebview docs ...
/sw64/src/fink.build/qt5-mac-doc-5.6.0-1/qtwebview-opensource-src-5.6.0 
/sw64/src/fink.build/qt5-mac-doc-5.6.0-1/qtdoc-opensource-src-5.6.0
cp: doc/*.qch: No such file or directory
...

TIA

Dominique

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[Fink-users] Failed: phase compiling: kdelibs4-mac-4.14.6-2 failed

2015-10-03 Thread Dominique Dhumieres

Updating to kdelibs4-mac-4.14.6-2 failed on

Package manager version: 0.39.0
Distribution version: selfupdate-rsync Sat Oct  3 10:11:41 2015, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 7.0.1
Xcode command-line tools: 7.0.0.0.1.1441394355
Max. Fink build jobs:  8

with

...
mkdir -p build
pushd build
/sw64/src/fink.build/kdelibs4-mac-4.14.6-2/kdelibs-4.14.6/build 
/sw64/src/fink.build/kdelibs4-mac-4.14.6-2/kdelibs-4.14.6
cmake $KDE4_CMAKE_ARGS \
-DKDE4_AUTH_BACKEND_NAME="OSX" \
-DMAC_USE_OSXKEYCHAIN=true \
-DDOCBOOKXML_CURRENTDTD_DIR:PATH=/sw64/share/xml/dtd/docbookx/4.2.0 \
-DDOCBOOKXSL_DIR:PATH=/sw64/share/xml/xsl/docbook-xsl \
-DWITH_FAM:BOOL=OFF \
-DBUNDLE_INSTALL_DIR=/sw64/Applications/KDE4 \
..
CMake Warning at 
/sw64/share/cmake-3.3/Modules/Platform/Darwin-Initialize.cmake:97 (message):
  CMAKE_OSX_DEPLOYMENT_TARGET is '10.10' but the matching SDK does not exist
  at:

   
"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk"

  Instead using SDK:

   
"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk".
Call Stack (most recent call first):
  /sw64/share/cmake-3.3/Modules/CMakeSystemSpecificInitialize.cmake:18 (include)
  CMakeLists.txt:1 (project)


-- The C compiler identification is AppleClang 7.0.0.772
-- The CXX compiler identification is AppleClang 7.0.0.772
CMake Error at /sw64/share/cmake-3.3/Modules/Platform/Darwin.cmake:76 (message):
  CMAKE_OSX_DEPLOYMENT_TARGET is '10.10' but CMAKE_OSX_SYSROOT:

   ""

  is not set to a MacOSX SDK with a recognized version.  Either set
  CMAKE_OSX_SYSROOT to a valid SDK or set CMAKE_OSX_DEPLOYMENT_TARGET to
  empty.
Call Stack (most recent call first):
  /sw64/share/cmake-3.3/Modules/CMakeSystemSpecificInformation.cmake:36 
(include)
  CMakeLists.txt:1 (project)


CMake Warning (dev) in CMakeLists.txt:
  No cmake_minimum_required command is present.  A line of code such as

cmake_minimum_required(VERSION 3.3)

  should be added at the top of the file.  The version specified may be lower
  if you wish to support older CMake versions for this project.  For more
  information run "cmake --help-policy CMP".
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring incomplete, errors occurred!
See also 
"/sw64/src/fink.build/kdelibs4-mac-4.14.6-2/kdelibs-4.14.6/build/CMakeFiles/CMakeOutput.log".
### execution of /tmp/fink.sYKQW failed, exit code 1
### execution of /tmp/fink.0dcdo failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-kdelibs4-mac-4.14.6-2
(Reading database ... 436612 files and directories currently installed.)
Removing fink-buildlock-kdelibs4-mac-4.14.6-2 ...
Failed: phase compiling: kdelibs4-mac-4.14.6-2 failed

TIA

Dominique

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[Fink-users] unable to make backup link of `./sw64/Applications/fluid.app/Contents/PkgInfo' ...

2015-05-17 Thread Dominique Dhumieres
Updating fltk13-aqua to 1.3.3-2.375 fails at install time with

Unpacking replacement fltk13-aqua ...
/sw64/bin/dpkg: error processing 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/libs/fltk13-aqua_1.3.3-2.375_darwin-x86_64.deb
 (--install):
 unable to make backup link of `./sw64/Applications/fluid.app/Contents/PkgInfo' 
before installing new version: Operation not permitted
/sw64/bin/dpkg-deb: subprocess paste killed by signal (Broken pipe: 13)
Errors were encountered while processing:
 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/libs/fltk13-aqua_1.3.3-2.375_darwin-x86_64.deb
### execution of /sw64/bin/dpkg-lockwait failed, exit code 1
Failed: can't install package fltk13-aqua-1.3.3-2.375

TIA

Dominique

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[Fink-users] Failed: phase compiling: qt5-mac-phonon4-4.8.3-1 failed

2015-05-04 Thread Dominique Dhumieres
Updating to qt5-mac-phonon4-4.8.3-1 failed on

Package manager version: 0.38.4
Distribution version: selfupdate-rsync Mon May  4 13:22:26 2015, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.3.1
Xcode command-line tools: 6.3.1.0.1.1429149539
Max. Fink build jobs:  8

with

...
-- Found OpenGL: 
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/System/Library/Frameworks/OpenGL.framework
  
CMake Error at 
/sw64/lib/qt5-mac/lib/cmake/Qt5Declarative/Qt5DeclarativeConfig.cmake:15 
(message):
  The imported target Qt5::Declarative references the file

 /sw64/lib/qt5-mac/plugins/qml1tooling/libqmldbg_inspector.so

  but this file does not exist.  Possible reasons include:

  * The file was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and contained

 
/sw64/lib/qt5-mac/lib/cmake/Qt5Declarative/Qt5Declarative_QtQuick1Plugin.cmake

  but not all the files it references.

Call Stack (most recent call first):
  /sw64/lib/qt5-mac/lib/cmake/Qt5Declarative/Qt5DeclarativeConfig.cmake:128 
(_qt5_Declarative_check_file_exists)
  
/sw64/lib/qt5-mac/lib/cmake/Qt5Declarative/Qt5Declarative_QtQuick1Plugin.cmake:4
 (_populate_Declarative_plugin_properties)
  /sw64/lib/qt5-mac/lib/cmake/Qt5Declarative/Qt5DeclarativeConfig.cmake:136 
(include)
  CMakeLists.txt:81 (find_package)


-- Configuring incomplete, errors occurred!
See also 
/sw64/src/fink.build/qt5-mac-phonon4-4.8.3-1/phonon-4.8.3/finkbuild/CMakeFiles/CMakeOutput.log.
### execution of /tmp/fink.yg55o failed, exit code 1
### execution of /tmp/fink.VWpXC failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-qt5-mac-phonon4-4.8.3-1
(Reading database ... 423009 files and directories currently installed.)
Removing fink-buildlock-qt5-mac-phonon4-4.8.3-1 ...
Failed: phase compiling: qt5-mac-phonon4-4.8.3-1 failed

TIA

Dominique

--
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Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
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[Fink-users] Failed: phase compiling: kbruch4-mac-4.14.3-1 failed

2015-01-28 Thread Dominique Dhumieres

Installing kbruch4-mac-4.14.3-1 on

Package manager version: 0.38.3
Distribution version: selfupdate-rsync Wed Jan 28 18:03:00 2015, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1.1
Xcode command-line tools: 6.1.1.0.1.1416017670
Max. Fink build jobs:  8

failed with

...
-- Found automoc4: /sw64/opt/kde4/mac/bin/automoc4
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/src/kbruch_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/src/kbruch_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/src/kbruch_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/src/kbruch_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/src/kbruch_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
-- Configuring incomplete, errors occurred!
See also 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/CMakeFiles/CMakeOutput.log.
See also 
/sw64/src/fink.build/kbruch4-mac-4.14.3-1/kbruch-4.14.3/build/CMakeFiles/CMakeError.log.
### execution of /tmp/fink.03vMO failed, exit code 1
### execution of /tmp/fink.jpdt8 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-kbruch4-mac-4.14.3-1
(Reading database ... 401682 files and directories currently installed.)
Removing fink-buildlock-kbruch4-mac-4.14.3-1 ...
Failed: phase compiling: kbruch4-mac-4.14.3-1 failed

kdebase4-runtime-mac and kgeography4-mac fail for the same errors.
There has been no improvement since my last report.
I have the following kde packages installed

 i   kde4-buildenv  4.13.1-2   Scripts for 
simplifying KDE4 builds
 i   kdelibs4-mac   4.14.3-2   KDE4 - Essential 
libraries
 i   kdelibs4-mac-dev   4.14.3-2   KDE4 - Essential 
development files
 i   kdelibs4-mac-shlibs4.14.3-2   KDE4 - Essential 
shared libraries
 i   kdenetwork4-mac-filesharing4.14.3-1   KDE4 - network 
filesharing configuration
 i   kdenetwork4-mac-strigi-analyz  4.14.3-1   KDE4 - Strigi 
network file plugins
 i   kdepimlibs4-mac4.14.3-1   KDE4 - PIM support 
libraries
 i   kdepimlibs4-mac-dev4.14.3-1   KDE4 - PIM support 
development files
 i   kdepimlibs4-mac-shlibs 4.14.3-1   KDE4 - PIM support 
shared libraries
 i   kdesdk4-mac-scripts4.14.3-1   KDE4 - Scripts for 
KDE development
 i   kdesdk4-mac-thumbnailers   4.14.3-1   KDE4 - File format 
thumbnailers

TIA

Dominique

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[Fink-users] Failed: phase compiling: gnuplot-pdfdocs-5.0.0-1 failed

2015-01-19 Thread Dominique Dhumieres
Updating to gnuplot-pdfdocs-5.0.0-1 failed on

Package manager version: 0.38.3
Distribution version: selfupdate-rsync Mon Jan 19 11:17:58 2015, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1.1
Xcode command-line tools: 6.1.1.0.1.1416017670
Max. Fink build jobs:  8

with

...
! LaTeX Error: File `picins.sty' not found.

Type X to quit or RETURN to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
read * 
 
l.51   \include{pdffigures}
   ^^M
!  == Fatal error occurred, no output PDF file produced!
...

(several times).

TIA

Dominique

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[Fink-users] Failed: phase compiling: pil-systempython25-1.1.7-6 failed

2014-11-29 Thread Dominique Dhumieres
Trying to install pil-systempython25-1.1.7-6 on

Package manager version: 0.38.2
Distribution version: selfupdate-rsync Sat Nov 29 16:31:56 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  8

failed with

sudo -u fink-bld [ENV] sh -c /tmp/fink.rsBM7
env LANG=C LC_ALL=C /sw64/bin/tar  --no-same-owner --no-same-permissions -xf 
/sw64/src/Imaging-1.1.7.tar.gz
sudo -u fink-bld [ENV] sh -c /tmp/fink.1YktJ
[ -r /sw64/fink/dists/stable/main/finkinfo/graphics/pil-systempython.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.TtkxU
sed 's|@PREFIX@|/sw64|g'  
/sw64/fink/dists/stable/main/finkinfo/graphics/pil-systempython.patch | patch 
-p1
patching file setup.py
sudo -u fink-bld [ENV] sh -c /tmp/fink.zJMRn
ARCHFLAGS=  /usr/bin/python2.5 setup.py build
sh: /usr/bin/python2.5: No such file or directory
### execution of ARCHFLAGS= failed, exit code 127
### execution of /tmp/fink.zJMRn failed, exit code 127
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-pil-systempython25-1.1.7-6
(Reading database ... 359812 files and directories currently installed.)
Removing fink-buildlock-pil-systempython25-1.1.7-6 ...
Failed: phase compiling: pil-systempython25-1.1.7-6 failed

AFAICT there is no /usr/bin/python2.5 in Yosemite and the package should
probably be removed from 10.10.

TIA

Dominique

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[Fink-users] Failed: phase patching: nan-oct382-2.5.9-1 failed

2014-11-02 Thread Dominique Dhumieres
Installing nan-oct382-2.5.9-1 failed on

Package manager version: 0.38.2
Distribution version: selfupdate-rsync Sun Nov  2 11:31:29 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
nan-oct382-2.5.9-1 is set to build with only one job.

with

...
env LANG=C LC_ALL=C /sw64/bin/tar  --no-same-owner --no-same-permissions -xf 
/sw64/src/nan-2.5.9.tar.gz
[ -r /sw64/fink/dists/stable/main/finkinfo/libs/octmods/nan-oct.patch ]
/tmp/fink.mKxv5
#!/bin/sh -ev
# set up script mkoctfile for Octave 3.8 and later which uses Fink's 
gcc49
if [ 382 -ge 380 ] ; then
mkdir bin
perl -p -e s/\%OCTAVE_CONF_VERSION\%/3.8.2/g ; \
s/\@GCCVERS\@/4.9/g ; 
s,\@FF2C\@,`/sw64/bin/mkoctfile-3.8.2 
-p FF2C`, ; \

s,\%OCTAVE_CONF_LAPACK_LIBS\%,\`/sw64/bin/mkoctfile-3.8.2 -p LAPACK_LIBS`\, ; 
\

s,\%OCTAVE_CONF_BLAS_LIBS\%,\`/sw64/bin/mkoctfile-3.8.2 -p BLAS_LIBS`\, ; \
s/\@CC\@/oct-cc/ ; \
s/\@CXX\@/oct-cxx/g 
/sw64/share/fink-octave-scripts/mkoctfile-gcc4n.in  bin/mkoctfile-3.8.2-gcc4.9
chmod a+x bin/mkoctfile-3.8.2-gcc4.9
perl -pi -e 's,(-lgomp),-L/sw64/lib/gcc4.9/lib \1,g' 
src/Makefile
fi
/sw64/bin/mkoctfile-3.8.2 -p FF2C
/sw64/bin/mkoctfile-3.8.2 -p LAPACK_LIBS
/sw64/bin/mkoctfile-3.8.2 -p BLAS_LIBS
String found where operator expected at -e line 2, near Accelerate, ; 
s,\%OCTAVE_CONF_BLAS_LIBS\%,
String found where operator expected at -e line 2, at end of line
(Missing semicolon on previous line?)
syntax error at -e line 2, near Accelerate, ; 
s,\%OCTAVE_CONF_BLAS_LIBS\%,
Can't find string terminator '' anywhere before EOF at -e line 2.
### execution of /tmp/fink.mKxv5 failed, exit code 255
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-nan-oct382-2.5.9-1
(Reading database ... 331476 files and directories currently installed.)
Removing fink-buildlock-nan-oct382-2.5.9-1 ...
Failed: phase patching: nan-oct382-2.5.9-1 failed

TIA

Dominique

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[Fink-users] Failed: phase compiling: ocs-oct382-0.1.3-7 failed

2014-11-02 Thread Dominique Dhumieres
Installing ocs-oct382-0.1.3-7 failed on

Package manager version: 0.38.2
Distribution version: selfupdate-rsync Sun Nov  2 11:31:29 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
ocs-oct382-0.1.3-7 is set to build with only one job.

with

...
ans = /sw64/src/fink.build/ocs-oct382-0.1.3-7/bld/share/octave/3.8.2/packages
mkdir (/var/tmp/oct-B46N42)
untar (./ocs.tar, /var/tmp/oct-B46N42)
make: on entre dans le repertoire/private/var/tmp/oct-B46N42/ocs/src
mkoctfile Mshichmanhodgesmosfet.cc
Mshichmanhodgesmosfet.cc:141:34: error: call to 'pow' is ambiguous
  *ids  = k*((vgs-Vth)*vds - pow(vds,2)/2 ) + vds/rd;
 ^~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:961:1:
 note: candidate function
  [with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/sw64/include/octave-3.8.2/octave/libcxx-fix.h:59:1: note: candidate function 
[with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/usr/include/math.h:443:15: note: candidate function
extern double pow(double, double);
  ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:949:46:
 note: candidate function
inline _LIBCPP_INLINE_VISIBILITY float   pow(float __x, float __y) 
_NOEXCEPT {return powf(__x, __y);}
 ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:950:46:
 note: candidate function
inline _LIBCPP_INLINE_VISIBILITY long double pow(long double __x, long double 
__y) _NOEXCEPT {return powl(__x, __y);}
 ^
Mshichmanhodgesmosfet.cc:144:36: error: call to 'pow' is ambiguous
  *didT = dkdT*((vgs-Vth)*vds-(pow(vds,2))/2);
   ^~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:961:1:
 note: candidate function
  [with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/sw64/include/octave-3.8.2/octave/libcxx-fix.h:59:1: note: candidate function 
[with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/usr/include/math.h:443:15: note: candidate function
extern double pow(double, double);
  ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:949:46:
 note: candidate function
inline _LIBCPP_INLINE_VISIBILITY float   pow(float __x, float __y) 
_NOEXCEPT {return powf(__x, __y);}
 ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:950:46:
 note: candidate function
inline _LIBCPP_INLINE_VISIBILITY long double pow(long double __x, long double 
__y) _NOEXCEPT {return powl(__x, __y);}
 ^
Mshichmanhodgesmosfet.cc:155:20: error: call to 'pow' is ambiguous
  *ids = (k/2)*pow((vgs-Vth),2) + vds/rd;
   ^~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:961:1:
 note: candidate function
  [with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/sw64/include/octave-3.8.2/octave/libcxx-fix.h:59:1: note: candidate function 
[with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/usr/include/math.h:443:15: note: candidate function
extern double pow(double, double);
  ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:949:46:
 note: candidate function
inline _LIBCPP_INLINE_VISIBILITY float   pow(float __x, float __y) 
_NOEXCEPT {return powf(__x, __y);}
 ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:950:46:
 note: candidate function
inline _LIBCPP_INLINE_VISIBILITY long double pow(long double __x, long double 
__y) _NOEXCEPT {return powl(__x, __y);}
 ^
Mshichmanhodgesmosfet.cc:158:25: error: call to 'pow' is ambiguous
  *didT= (dkdT/(2))*pow((vgs-Vth),2);
^~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:961:1:
 note: candidate function
  [with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/sw64/include/octave-3.8.2/octave/libcxx-fix.h:59:1: note: candidate function 
[with _A1 = double, _A2 = int]
pow(_A1 __x, _A2 __y) _NOEXCEPT
^
/usr/include/math.h:443:15: note: candidate function
extern double pow(double, double);
  ^

[Fink-users] Failed: install phase: directory /sw64/src/fink.build/llvm34-3.4.2-2/llvm-3.4.2.src doesn't exist, check the package description

2014-10-27 Thread Dominique Dhumieres
Trying to install llvm34-bundle on

Package manager version: 0.38.1
Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  8

failed with

...
Failed: install phase: directory 
/sw64/src/fink.build/llvm34-3.4.2-2/llvm-3.4.2.src doesn't exist, check the 
package description

TIA

Dominique

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[Fink-users] Missing packages

2014-10-27 Thread Dominique Dhumieres
The pakages akonadi-mac-dev (= 1.12.90-1) and librasqal3-dev (= 0.9.28-1)
are missing on

Package manager version: 0.38.1
Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  8

TIA

Dominique

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[Fink-users] Failed: phase compiling: cppunit1.12.1-1.12.1-2 failed

2014-10-27 Thread Dominique Dhumieres
Installing cppunit1.12.1-1.12.1-2 failed on

Package manager version: 0.38.1
Distribution version: selfupdate-rsync Mon Oct 27 13:20:43 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  8

with

...
 g++ -DHAVE_CONFIG_H -I. -I../../config -I../../include -I../../include 
-I/sw64/include -g -O2 -W -Wall -Werror -c TestFactoryRegistry.cpp  -fno-common 
-DPIC -o .libs/TestFactoryRegistry.o
In file included from TestAssert.cpp:2:
../../include/cppunit/portability/FloatingPoint.h:43:11: error: 'finite' is 
deprecated: first deprecated in OS X 10.9
  [-Werror,-Wdeprecated-declarations]
   return finite( x );
  ^
/usr/include/math.h:718:12: note: 'finite' has been explicitly marked 
deprecated here
extern int finite(double) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, 
__MAC_10_9, __IPHONE_NA, __IPHONE_NA);
   ^
1 error generated.
make[2]: *** [TestAssert.lo] Error 1
...

TIA

Dominique

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[Fink-users] Failed: phase compiling: graphviz-2.26.3-10 failed

2014-10-22 Thread Dominique Dhumieres
Installing graphviz-2.26.3-10 on

Package manager version: 0.38.1
Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  8

failed with

...
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/common 
-I../../lib/pathplan -I../../lib/gvc -I../../lib/graph -I../../lib/cdt 
-I/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Headers
 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include 
-I/sw64/lib/ocaml -idirafter 
/System/Library/Frameworks/Ruby.framework/Versions/2.0/Headers/ruby 
-I/sw64/include -I/sw64/include -g -O2 -fno-common -Wall -MT gvrender_quartz.lo 
-MD -MP -MF .deps/gvrender_quartz.Tpo -c gvrender_quartz.c  -fno-common -DPIC 
-o .libs/gvrender_quartz.o
gvloadimage_quartz.c:27:10: fatal error: 'CGGLContext.h' file not found
#include CGGLContext.h
 ^
1 error generated.
make[3]: *** [gvloadimage_quartz.lo] Error 1
make[3]: *** Waiting for unfinished jobs
mv -f .deps/GVTextLayout.Tpo .deps/GVTextLayout.Plo
mv -f .deps/gvplugin_quartz.Tpo .deps/gvplugin_quartz.Plo
mv -f .deps/gvdevice_quartz.Tpo .deps/gvdevice_quartz.Plo
mv -f .deps/gvtextlayout_quartz.Tpo .deps/gvtextlayout_quartz.Plo
mv -f .deps/gvrender_quartz.Tpo .deps/gvrender_quartz.Plo
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
### execution of /tmp/fink.v45Gw failed, exit code 2
### execution of /tmp/fink.9xV0C failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-graphviz-2.26.3-10
(Reading database ... 165283 files and directories currently installed.)
Removing fink-buildlock-graphviz-2.26.3-10 ...
Reading buildlock packages...
/sw64/bin/dpkg-lockwait -i 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-dev_8.6.1-104_darwin-x86_64.deb
Selecting previously deselected package tcltk-dev.
(Reading database ... 165282 files and directories currently installed.)
Unpacking tcltk-dev (from .../tcltk-dev_8.6.1-104_darwin-x86_64.deb) ...
Setting up tcltk-dev (8.6.1-104) ...

TIA

Dominique

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[Fink-users] Failed: phase compiling: kdebase4-runtime-mac-4.14.0-1 failed

2014-10-04 Thread Dominique Dhumieres
Another package of kde that is failing for the same reason as cantor4-mac
is kdebase4-runtime-mac-4. So far I have an incomplete install of kde:

 i   kde4-buildenv 4.13.1-2   Scripts for 
simplifying KDE4 builds
 i   kdeadmin4-mac 4.14.0-1   KDE4 - UNIX admin 
tools
 i   kdelibs4-mac  4.14.0-1   KDE4 - Essential 
libraries
 i   kdelibs4-mac-dev  4.14.0-1   KDE4 - Essential 
development files
 i   kdelibs4-mac-shlibs   4.14.0-1   KDE4 - Essential 
shared libraries
 i   kdenetwork4-mac-filesharing   4.14.0-1   KDE4 - network 
filesharing configuration
 i   kdenetwork4-mac-strigi-analy  4.14.0-1   KDE4 - Strigi network 
file plugins
 i   kdepimlibs4-mac   4.14.0-2   KDE4 - PIM support 
libraries
 i   kdepimlibs4-mac-dev   4.14.0-2   KDE4 - PIM support 
development files
 i   kdepimlibs4-mac-shlibs4.14.0-2   KDE4 - PIM support 
shared libraries
 i   kdesdk4-mac-scripts   4.14.0-1   KDE4 - Scripts for 
KDE development
 i   kdesdk4-mac-thumbnailers  4.14.0-1   KDE4 - File format 
thumbnailers
 i   libkdeedu4-mac-dev4.14.0-1   KDE4 - Development 
files for libkdeedu
 i   libkdeedu4-mac-shlibs 4.14.0-1   KDE4 - Educational 
software library

I have rebuilt kdelibs4-mac, kdesdk4-mac-scripts, and kdesdk4-mac-thumbnailers
without success.

TIA

Dominique

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[Fink-users] Failed: phase compiling: cantor4-mac-4.14.0-1 failed

2014-09-19 Thread Dominique Dhumieres
Trying to install cantor4-mac-4.14.0-1 failed on

Package manager version: 0.37.0
Distribution version: selfupdate-rsync Fri Sep 19 14:09:55 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 6.0.1
Xcode command-line tools: 6.0.0.0.1.1410400753
Max. Fink build jobs:  8

with

...
-- Found Qalculate: -L/sw64/lib -lcln -lpthread -lqalculate -lglib-2.0 -lintl 
-lxml2  
-- -L/sw64/lib -lcln
-- Could NOT find LuaJIT (missing:  LUAJIT_LIBRARY) 
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/src/cantor_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/src/cantor_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.

-
-- The following external packages were located on your system.
-- This installation will have the extra features provided by these packages.
-
   * libanalitza - A library provided by KAlgebra
   * Qalculate - A multi-purpose desktop calculator with support for 
customizable functions, units and arbitrary precision.

-
-- The following OPTIONAL packages could NOT be located on your system.
-- Consider installing them to enable more features from this software.
-
   * R  http://www.r-project.org/
 A free software environment for statistical computing and graphics
 Backend to use R with Cantor.
   * libspectre  http://libspectre.freedesktop.org/wiki/
 A PostScript rendering library
 Support for rendering EPS files in Cantor.
   * Python2  http://python.org/
 A powerful dynamic programming language
 Backend to use Python2 with Cantor.
   * Lua  http://www.lua.org/
 A lightweight, extensible programming language (luajit implementation).
 Backend to use Lua (luajit2) with Cantor

-

-- Configuring incomplete, errors occurred!
See also 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/CMakeFiles/CMakeOutput.log.
See also 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/CMakeFiles/CMakeError.log.
### execution of /tmp/fink.kKhxp failed, exit code 1
### execution of /tmp/fink.raGQO failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-cantor4-mac-4.14.0-1
(Reading database ... 342878 files and directories currently installed.)
Removing fink-buildlock-cantor4-mac-4.14.0-1 ...
Failed: phase compiling: cantor4-mac-4.14.0-1 failed

As said in a previous post (Re: Failed: phase compiling: 
nepomuk-core-mac-4.14.0-1 failed)

 I have moved /usr/local out of the way without any improvement.
 I remember that some fink packages conflict with cmake, but I cannot
 remember which ones.

TIA

Dominique

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[Fink-users] Failed: phase compiling: libavcodec56-2.4-shlibs-2.4-1 failed

2014-09-15 Thread Dominique Dhumieres
Updating libavcodec56-2.4-shlibs-2.4-1 failed on

Package manager version: 0.37.0
Distribution version: selfupdate-rsync Mon Sep 15 23:49:12 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  8

with

...
--enable-zlib
ERROR: vidstab not found

If you think configure made a mistake, make sure you are using the latest
version from Git.  If the latest version fails, report the problem to the
ffmpeg-u...@ffmpeg.org mailing list or IRC #ffmpeg on irc.freenode.net.
Include the log file config.log produced by configure as this will help
solve the problem.
### execution of /tmp/fink.I4ViQ failed, exit code 1
### execution of /tmp/fink.E0p33 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-libavcodec56-2.4-shlibs-2.4-1
(Reading database ... 342787 files and directories currently installed.)
Removing fink-buildlock-libavcodec56-2.4-shlibs-2.4-1 ...
Failed: phase compiling: libavcodec56-2.4-shlibs-2.4-1 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: nepomuk-core-mac-4.14.0-1 failed

2014-09-03 Thread Dominique Dhumieres
 I think that's now taken care of as well in revision -2 for
 kdepimlibs4-mac-shlibs.

Confirmed, thanks. Now back to the errors

...
-- Could NOT find LuaJIT (missing:  LUAJIT_LIBRARY) 
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/src/cantor_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/src/cantor_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
...
-- Configuring incomplete, errors occurred!
See also 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/CMakeFiles/CMakeOutput.log.
See also 
/sw64/src/fink.build/cantor4-mac-4.14.0-1/cantor-4.14.0/build/CMakeFiles/CMakeError.log.
### execution of /tmp/fink.MxfRM failed, exit code 1
### execution of /tmp/fink.vCB8c failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-cantor4-mac-4.14.0-1
(Reading database ... 342549 files and directories currently installed.)
Removing fink-buildlock-cantor4-mac-4.14.0-1 ...
Failed: phase compiling: cantor4-mac-4.14.0-1 failed

Same error with several other kde packages.

Dominique

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Re: [Fink-users] Failed: phase compiling: nepomuk-core-mac-4.14.0-1 failed

2014-09-02 Thread Dominique Dhumieres
 Should be fixed with revision -2.

Thanks, but now I get

[Book15] /Users/dominiq% sudo fink update nepomuk-core-mac
Information about 9712 packages read in 2 seconds.
The following package will be installed or updated:
 nepomuk-core-mac
The following 15 additional packages will be installed:
 kdepimlibs4-mac kdepimlibs4-mac-dev kdepimlibs4-mac-shlibs 
libbaloocore4-mac-dev libbaloocore4-mac-shlibs libbaloofiles4-mac-dev
 libbaloofiles4-mac-shlibs libbaloopim4-mac-dev libbaloopim4-mac-shlibs 
libbalooqueryparser4-mac-dev libbalooqueryparser4-mac-shlibs
 libbalooxapian4-mac-shlibs libkholidays4-mac-shlibs libnepomuk4-mac-dev 
libnepomuk4-mac-shlibs
Do you want to continue? [Y/n] 
Failed: Problem resolving dependencies. Check for circular dependencies.

Dominique

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[Fink-users] Failed: phase compiling: nepomuk-core-mac-4.14.0-1 failed

2014-09-01 Thread Dominique Dhumieres
Installing nepomuk-core-mac-4.14.0-1 on

Package manager version: 0.37.0
Distribution version: selfupdate-rsync Mon Sep  1 16:06:58 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  8

failed with

...
CMake Error at 
/sw64/opt/kde4/mac/lib/cmake/Baloo/BalooTargetsWithPrefix.cmake:61 (message):
  The imported target baloopim references the file

 /sw64/opt/kde4/mac/lib/libbaloopim.4.13.1.dylib

  but this file does not exist.  Possible reasons include:

  * The file was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and contained

 /sw64/opt/kde4/mac/lib/cmake/Baloo/BalooTargetsWithPrefix.cmake

  but not all the files it references.

Call Stack (most recent call first):
  /sw64/opt/kde4/mac/lib/cmake/Baloo/BalooConfig.cmake:22 (include)
  CMakeLists.txt:50 (find_package)


-- Configuring incomplete, errors occurred!
See also 
/sw64/src/fink.build/nepomuk-core-mac-4.14.0-1/nepomuk-core-4.14.0/build/CMakeFiles/CMakeOutput.log.
See also 
/sw64/src/fink.build/nepomuk-core-mac-4.14.0-1/nepomuk-core-4.14.0/build/CMakeFiles/CMakeError.log.
### execution of /tmp/fink.l5OWa failed, exit code 1
### execution of /tmp/fink.KCOAf failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-nepomuk-core-mac-4.14.0-1
(Reading database ... 340029 files and directories currently installed.)
Removing fink-buildlock-nepomuk-core-mac-4.14.0-1 ...
Failed: phase compiling: nepomuk-core-mac-4.14.0-1 failed

TIA

Dominique

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[Fink-users] Failed: phase compiling: inkscape-0.48.4-14 failed

2014-07-09 Thread Dominique Dhumieres
Updating to inkscape-0.48.4-14 failed on

Package manager version: 0.37.0
Distribution version: selfupdate-rsync Wed Jul  9 18:19:28 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  8

with

...
g++ -DHAVE_CONFIG_H -I. -I.. -I../cxxtest -I./bind/javainc 
-I./bind/javainc/linux   -I/sw64/include/freetype2 -I/sw64/include  
-I/sw64/include/gnome-vfs-2.0 -I/sw64/lib/gnome-vfs2.16/gnome-vfs-2.0/include 
-I/sw64/include/gconf/2 -I/sw64/include/glib-2.0 -I/sw64/lib/glib-2.0/include 
-I/sw64/include/ImageMagick-6 -DMAGICKCORE_HDRI_ENABLE=1 
-DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_HDRI_ENABLE=1 
-DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_HDRI_ENABLE=1 
-DMAGICKCORE_QUANTUM_DEPTH=16  -I/sw64/include/libwpg-0.2 
-I/sw64/include/libwpd-0.9  -I/sw64/include  -I/sw64/include/poppler  
-I/sw64/include/poppler/glib -I/sw64/include/glib-2.0 
-I/sw64/lib/glib-2.0/include -I/sw64/include/cairo -I/sw64/include 
-I/sw64/include/freetype2 -I/sw64/include -I/opt/X11/include 
-DPOTRACE=\potrace\ -I/sw64/include/gtkmm-2.4 -I/sw64/lib/gtkmm-2.4/include 
-I/sw64/include/gtk-unix-print-2.0 -I/sw64/include/gtk-2.0 
-I/sw64/include/atkmm-1.6 -I/sw64/include/gdkmm-2.4 
-I/sw64/lib/gdkmm-2.4/include -I/sw64/include
 /giomm-2.4 -I/sw64/lib/giomm-2.4/include -I/sw64/include/pangomm-1.4 
-I/sw64/lib/pangomm-1.4/include -I/sw64/include/glibmm-2.4 
-I/sw64/lib/glibmm-2.4/include -I/sw64/include/cairomm-1.0 
-I/sw64/lib/cairomm-1.0/include -I/sw64/include -I/sw64/include/libxml2 
-I/sw64/include -I/sw64/include/sigc++-2.0 -I/sw64/lib/sigc++-2.0/include 
-I/sw64/include/gtkspell-2.0 -I/sw64/include/gtk-2.0 
-I/sw64/lib/gtk-2.0/include -I/sw64/include/gtk-2.0 -I/sw64/include/pango-1.0 
-I/sw64/include/atk-1.0 -I/sw64/include/cairo -I/sw64/include/pango-1.0 
-I/sw64/include/freetype2 -I/sw64/include -I/sw64/include/glib-2.0 
-I/sw64/lib/glib-2.0/include -I/sw64/include/libpng16 -I/sw64/include 
-I/opt/X11/include -I/usr/X11R6/include-Werror=format-security -Wall 
-Wformat -Wformat-security -W -D_FORTIFY_SOURCE=2 
-I/sw64/opt/boost-1_55/include -I/sw64/include  -Wpointer-arith -Wcast-align 
-Wsign-compare -Woverloaded-virtual -Wswitch -Wno-unused-parameter  -std=c++11 
-g -O2 -MT conn-avoid-ref.o -MD -MP -MF $depb
 ase.Tpo -c -o conn-avoid-ref.o conn-avoid-ref.cpp \
mv -f $depbase.Tpo $depbase.Po
In file included from box3d.cpp:24:
In file included from ./box3d-side.h:15:
In file included from ./sp-polygon.h:16:
./sp-shape.h:33:1: warning: struct 'SPDesktop' was previously declared as a 
class [-Wmismatched-tags]
struct SPDesktop;
^
./forward.h:27:7: note: previous use is here
class SPDesktop;
  ^
In file included from box3d.cpp:24:
In file included from ./box3d-side.h:15:
In file included from ./sp-polygon.h:16:
./sp-shape.h:35:1: warning: 'SPShape' defined as a struct here but previously 
declared as a class [-Wmismatched-tags]
struct SPShape : public SPLPEItem {
^
./forward.h:102:1: note: did you mean struct here?
class SPShape;
^
struct
In file included from box3d.cpp:24:
In file included from ./box3d-side.h:15:
In file included from ./sp-polygon.h:16:
./sp-shape.h:43:1: warning: 'SPShapeClass' defined as a struct here but 
previously declared as a class [-Wmismatched-tags]
struct SPShapeClass {
^
./forward.h:103:1: note: did you mean struct here?
class SPShapeClass;
^
struct
In file included from box3d.cpp:24:
...
In file included from conditions.cpp:20:
In file included from ./conditions.h:4:
In file included from ./sp-item.h:25:
In file included from ./libnr/nr-rect.h:28:
In file included from ./2geom/rect.h:40:
In file included from ./2geom/d2.h:36:
./2geom/interval.h:241:43: error: invalid operands to binary expression 
('Geom::OptInterval' and 'int')
inline bool isEmpty() { return (*this == false); };
~ ^  ~
/sw64/opt/boost-1_55/include/boost/optional/optional.hpp:859:6: note: candidate 
function [with T = Geom::Interval] not viable: no known conversion
  from 'bool' to 'none_t' (aka 'int boost::detail::none_helper::*') for 2nd 
argument
bool operator == ( optionalT const x, none_t )
 ^
./2geom/point.h:158:13: note: candidate function not viable: no known 
conversion from 'Geom::OptInterval' to 'const Geom::Point' for 1st argument
inline bool operator==(Point const a, Point const b) {
^
./2geom/matrix.h:142:13: note: candidate function not viable: no known 
conversion from 'Geom::OptInterval' to 'const Geom::Matrix' for 1st argument
inline bool operator==(Matrix const a, Matrix const b) {
^
/sw64/opt/boost-1_55/include/boost/optional/optional.hpp:790:6: note: candidate 
template ignored: deduced conflicting types for parameter 'T'
  ('Geom::Interval' vs. 'bool')
bool operator == ( optionalT const x, T const y )
 ^
/sw64/opt/boost-1_55/include/boost/optional/optional.hpp:756:6: note: candidate 
template ignored: could not match 

[Fink-users] Failed: phase compiling: h5py-py34-2.3.0-2 failed

2014-06-23 Thread Dominique Dhumieres
Updating to h5py-py34-2.3.0-2 failed on

Package manager version: 0.37.0
Distribution version: selfupdate-rsync Mon Jun 23 11:05:53 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  8

with

gcc -Wno-unused-result -Werror=declaration-after-statement -DNDEBUG -g -fwrapv 
-fwrapv -O3 -Wall -Wstrict-prototypes -I/sw64/include -DH5_USE_16_API 
-I/sw64/src/fink.build/h5py-py34-2.3.0-2/h5py-2.3.0/lzf -I/sw64/include 
-I/sw64/lib/python3.4/site-packages/numpy/core/include 
-I/sw64/include/python3.4m -c h5py/h5fd.c -o 
build/temp.macosx-10.9-x86_64-3.4/h5py/h5fd.o
In file included from h5py/h5fd.c:316:
In file included from h5py/api_compat.h:26:
In file included from 
/sw64/lib/python3.4/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from 
/sw64/lib/python3.4/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from 
/sw64/lib/python3.4/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/sw64/lib/python3.4/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: Using deprecated NumPy API, disable it by 
  #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION [-W#warnings]
#warning Using deprecated NumPy API, disable it by  \
 ^
h5py/h5fd.c:1018:39: error: use of undeclared identifier 'H5FD_MPIPOSIX'
  __pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1)) 
{__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_cl...
  ^
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
### execution of /sw64/bin/python3.4 failed, exit code 1
### execution of /tmp/fink.ZrO4J failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-h5py-py34-2.3.0-2
(Reading database ... 335492 files and directories currently installed.)
Removing fink-buildlock-h5py-py34-2.3.0-2 ...
Failed: phase compiling: h5py-py34-2.3.0-2 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: cantor4-mac-4.13.1-2 failed

2014-06-23 Thread Dominique Dhumieres
 This is fixed after a selfupdate. ...

It is, but building kdebase4 still fails with the custom rule problem.

 I can point to the macro that it's occurring in,

Yes, please. I may have to rebuild the relevant package(s).

Thanks for your help,

Dominique

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Re: [Fink-users] Failed: phase compiling: cantor4-mac-4.13.1-2 failed

2014-06-21 Thread Dominique Dhumieres
 A quick thing to try is add the following to the very beginning of 
 CompileScript ...

Thanks for the answer, this allows cantor4 to build, but I now get

CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kalgebra4-mac-4.13.1-2/kalgebra-4.13.1/build/src/kalgebra_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kalgebra4-mac-4.13.1-2/kalgebra-4.13.1/build/src/kalgebra_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kalgebra4-mac-4.13.1-2/kalgebra-4.13.1/build/src/kalgebra_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/kalgebra4-mac-4.13.1-2/kalgebra-4.13.1/build/src/kalgebra_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.

Note that I also have a problem in

[Book15] /Users/dominiq% sudo fink build libknotifyplugin4-mac-shlibs
Information about 10037 packages read in 1 seconds.
The following package will be built:
 libknotifyplugin4-mac-shlibs
Setting runtime build-lock...
dpkg-deb -b 
/sw64/src/fink.build/root-fink-buildlock-kdebase4-runtime-mac-4.13.1-2 
/sw64/src/fink.build
dpkg-deb: building package `fink-buildlock-kdebase4-runtime-mac-4.13.1-2' in 
`/sw64/src/fink.build/fink-buildlock-kdebase4-runtime-mac-4.13.1-2_2014.06.21-11.27.08_darwin-x86_64.deb'.
Installing build-lock package...
/sw64/bin/dpkg-lockwait -i 
/sw64/src/fink.build/fink-buildlock-kdebase4-runtime-mac-4.13.1-2_2014.06.21-11.27.08_darwin-x86_64.deb
Selecting previously deselected package 
fink-buildlock-kdebase4-runtime-mac-4.13.1-2.
(Reading database ... 335491 files and directories currently installed.)
Unpacking fink-buildlock-kdebase4-runtime-mac-4.13.1-2 (from 
.../fink-buildlock-kdebase4-runtime-mac-4.13.1-2_2014.06.21-11.27.08_darwin-x86_64.deb)
 ...
dpkg: dependency problems prevent configuration of 
fink-buildlock-kdebase4-runtime-mac-4.13.1-2:
 fink-buildlock-kdebase4-runtime-mac-4.13.1-2 depends on 
libknotifyplugin4-mac-shlibs (= 4.13.1-1); however:
  Package libknotifyplugin4-mac-shlibs is not installed.
/sw64/bin/dpkg: error processing fink-buildlock-kdebase4-runtime-mac-4.13.1-2 
(--install):
 dependency problems - leaving unconfigured
Errors were encountered while processing:
 fink-buildlock-kdebase4-runtime-mac-4.13.1-2
### execution of /sw64/bin/dpkg-lockwait failed, exit code 1
Can't set build lock for kdebase4-runtime-mac (4.13.1-2)

TIA

Dominique

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[Fink-users] Failed: phase compiling: cantor4-mac-4.13.1-2 failed

2014-06-20 Thread Dominique Dhumieres
Compiling: cantor4-mac-4.13.1-2 failed on

Package manager version: 0.37.0
Distribution version: selfupdate-rsync Fri Jun 20 12:11:49 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  8

with

...
-- Found Qt-Version 4.8.6
--  - QT_QMAKE_EXECUTABLE is /sw64/lib/qt4-mac/bin/qmake
--  - QT_INCLUDE_DIR is 
/sw64/lib/qt4-mac/include;/sw64/lib/qt4-mac/lib/QtCore.framework
--  - QT_QTCORE_INCLUDE_DIR is /sw64/lib/qt4-mac/include/QtCore
--  - QT_BINARY_DIR is /sw64/lib/qt4-mac/bin
--  - QT_LIBRARY_DIR is /sw64/lib/qt4-mac/lib
--  - QT_PLUGINS_DIR is /sw64/lib/qt4-mac/plugins
--  - QT_MKSPECS_DIR is /sw64/lib/qt4-mac/share/qt4/mkspecs
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Found OpenSSL: 
/sw64/lib/system-openssl/lib/libssl.dylib;/sw64/lib/system-openssl/lib/libcrypto.dylib
 (found version 0.9.8y) 
-- Found Automoc4: /sw64/opt/kde4/mac/bin/automoc4  
-- Found Perl: /usr/bin/perl (found version 5.16.2) 
-- Looking for Phonon
--  - KDE4_INCLUDE_INSTALL_DIR is /sw64/opt/kde4/mac/include
--  - KDE4_LIB_INSTALL_DIR is /sw64/opt/kde4/mac/lib
--  - INCLUDE_INSTALL_DIR is 
--  - QT_LIBRARY_DIR is /sw64/lib/qt4-mac/lib
--  - QT_INCLUDE_DIR is 
/sw64/lib/qt4-mac/include;/sw64/lib/qt4-mac/lib/QtCore.framework
-- Results of Search for Phonon
--  - PHONON_VERSION is 4.5.0
--  - PHONON_INCLUDE_DIR is /sw64/lib/qt4-mac/lib/phonon.framework
--  - PHONON_LIBRARY is /sw64/lib/qt4-mac/lib/phonon.framework
-- Found Phonon: /sw64/lib/qt4-mac/lib/phonon.framework (Required is at least 
version 4.3.80) 
-- Performing Test _OFFT_IS_64BIT
-- Performing Test _OFFT_IS_64BIT - Success
-- Found KDE 4.12 include dir: /sw64/opt/kde4/mac/include
-- Found KDE 4.12 library dir: /sw64/opt/kde4/mac/lib
-- Found the KDE4 kconfig_compiler preprocessor: 
/sw64/opt/kde4/mac/bin/kconfig_compiler
-- Found automoc4: /sw64/opt/kde4/mac/bin/automoc4
-- Found Qalculate: -L/sw64/lib -lcln -lpthread -lqalculate -lglib-2.0 -lintl 
-lxml2  
-- -L/sw64/lib -lcln
-- Found PythonLibs: /sw64/lib/libpython2.7.dylib (found suitable version 
2.7.5, minimum required is 2.7) 
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/cantor4-mac-4.13.1-2/cantor-4.13.1/build/src/cantor_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.
CMake Error: Attempt to add a custom rule to output 
/sw64/src/fink.build/cantor4-mac-4.13.1-2/cantor-4.13.1/build/src/cantor_SRCS.iconset/icon_32...@2x.png.rule
 which already has a custom rule.

-
-- The following external packages were located on your system.
-- This installation will have the extra features provided by these packages.
-
   * libanalitza - A library provided by KAlgebra
   * Qalculate - A multi-purpose desktop calculator with support for 
customizable functions, units and arbitrary precision.
   * Python2 - A powerful dynamic programming language

-
-- The following OPTIONAL packages could NOT be located on your system.
-- Consider installing them to enable more features from this software.
-
   * R  http://www.r-project.org/
 A free software environment for statistical computing and graphics
 Backend to use R with Cantor.
   * libspectre  http://libspectre.freedesktop.org/wiki/
 A PostScript rendering library
 Support for rendering EPS files in Cantor.

-

-- Configuring incomplete, errors occurred!
See also 
/sw64/src/fink.build/cantor4-mac-4.13.1-2/cantor-4.13.1/build/CMakeFiles/CMakeOutput.log.
See also 
/sw64/src/fink.build/cantor4-mac-4.13.1-2/cantor-4.13.1/build/CMakeFiles/CMakeError.log.
### execution of /tmp/fink.KF2IM failed, exit code 1
### execution of /tmp/fink.HBHZ1 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-cantor4-mac-4.13.1-2
(Reading database ... 335371 files and directories currently installed.)
Removing fink-buildlock-cantor4-mac-4.13.1-2 ...
Failed: phase compiling: cantor4-mac-4.13.1-2 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase installing: llvm34-3.4-0e failed

2014-02-16 Thread Dominique Dhumieres
Hi David,

 Looks like it died at the start of InstallScript.  How odd.  Can you bzip
 me a full log of the build so I can see if any
 earlier commands failed?  (and compare against my 10.7 log)

Unfortunately I did not keep my log (I had to reboot following a system
freeze). And as I said I found a work-around to update the packages.

 And perhaps list:
 % ls -l /sw64/src/fink.build/llvm34-3.4_0e
 % ls -l /sw64/src/fink.build/llvm34-3.4_0e/build

Since I have updated these directories are gone.

Now I remember that the first time I installed llvm34, I tried first
to install llvm34-bundle and it failed very early with something
similar to what I have posted.

What is the use of 'pushd ../build/last' in

 #!/bin/sh -ev
 pushd ../build/last
 /tmp/fink.O2hsE: line 2: pushd: ../build/last: No such file or directory

?

Cheers,

Dominique

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[Fink-users] Failed: phase installing: llvm34-3.4-0e failed

2014-02-15 Thread Dominique Dhumieres
Hi David,

Updating to llvm34-3.4-0e failed on

Package manager version: 0.36.3.1
Distribution version: selfupdate-rsync Sat Feb 15 11:31:35 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.2
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  8

when using update-all:

/bin/rm -rf /sw64/src/fink.build/root-llvm34-3.4-0e
/bin/mkdir -p /sw64/src/fink.build/root-llvm34-3.4-0e/sw64
/bin/mkdir -p /sw64/src/fink.build/root-llvm34-3.4-0e/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw64/src/fink.build/root-llvm34-3.4-0e
sudo -u fink-bld [ENV] sh -c /tmp/fink.WXBqo
/tmp/fink.O2hsE
#!/bin/sh -ev
pushd ../build/last
/tmp/fink.O2hsE: line 2: pushd: ../build/last: No such file or directory
### execution of /tmp/fink.O2hsE failed, exit code 1
### execution of /tmp/fink.WXBqo failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-llvm34-3.4-0e
(Reading database ... 270784 files and directories currently installed.)
Removing fink-buildlock-llvm34-3.4-0e ...
Reading buildlock packages...
/sw64/bin/dpkg-lockwait -i 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/devel/cloog-org2_0.18.1-1_darwin-x86_64.deb
Selecting previously deselected package cloog-org2.
(Reading database ... 270783 files and directories currently installed.)
Unpacking cloog-org2 (from .../cloog-org2_0.18.1-1_darwin-x86_64.deb) ...
Setting up cloog-org2 (0.18.1-1) ...
Clearing dependency_libs of .la files being installed

Failed: phase installing: llvm34-3.4-0e failed

Updating first llvm34 worked but required to go through

  fink scanpackages
  sudo apt-get update
  sudo apt-get install llvm34-shlibs=3.4-0e libcxx1-shlibs=3.4-0e

to update all packages.

Dominique

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Re: [Fink-users] Failed: phase compiling: parallel-oct364-2.0.5-6 failed

2013-12-15 Thread Dominique Dhumieres
 Now added to the distribution.

This has still not propagated to me!-(

Dominique

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[Fink-users] Failed: phase compiling: parallel-oct364-2.0.5-6 failed

2013-12-13 Thread Dominique Dhumieres
Installing parallel-oct364-2.0.5-6 on

Package manager version: 0.36.1
Distribution version: selfupdate-rsync Fri Dec 13 20:51:32 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.2
Xcode command-line tools: 5.0.1.0.1.1382131676
parallel-oct364-2.0.5-6 is set to build with only one job.

failed with

mkoctfile: stripping disabled on this platform
mkoctfile: stripping disabled on this platform
connect.cc:41:9: error: use of undeclared identifier 'read'
if (read (fd, buf, count)  (ssize_t)count)
^
connect.cc:49:9: error: use of undeclared identifier 'write'
if (write (fd, buf, count)  (ssize_t)count)
^
connect.cc:111:6: error: use of undeclared identifier 'usleep'
usleep(5000);
^
connect.cc:128:10: error: use of undeclared identifier 'getpid'
pid=getpid();
^
connect.cc:168:7: error: use of undeclared identifier 'usleep'
  usleep(100); // why?
  ^
connect.cc:205:6: error: use of undeclared identifier 'usleep'
usleep(5000);
^
connect.cc:247:8: error: use of undeclared identifier 'close'
  close(sock);
  ^
7 errors generated.
make: *** [connect.oct] Error 1
'make' returned the following error: make: Entering directory 
`/private/var/tmp/oct-KZccSk/parallel-2.0.5/src'
/sw64/bin/mkoctfile-3.6.4 -s sclose.cc sock-stream.cc
/sw64/bin/mkoctfile-3.6.4 -s connect.cc sock-stream.cc
make: Leaving directory `/private/var/tmp/oct-KZccSk/parallel-2.0.5/src'
error: called from 'pkgconfigure_make' in file 
/sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
error: called from:
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
error:   /sw64/src/fink.build/parallel-oct364-2.0.5-6/bld/octave-forge-comp at 
line 4, column 1
### execution of /tmp/fink.t8Gq9 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-parallel-oct364-2.0.5-6
(Reading database ... 270790 files and directories currently installed.)
Removing fink-buildlock-parallel-oct364-2.0.5-6 ...
Failed: phase compiling: parallel-oct364-2.0.5-6 failed

TIA

Dominique

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[Fink-users] Failed: phase compiling: dicom-oct364-0.1.1-6 failed

2013-12-08 Thread Dominique Dhumieres
Updating to dicom-oct364-0.1.1-6 on

Package manager version: 0.36.1
Distribution version: selfupdate-cvs Sun Dec  8 16:07:15 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.2
Xcode command-line tools: 5.0.1.0.1.1382131676
dicom-oct364-0.1.1-6 is set to build with only one job.

failed with

ans = /sw64/src/fink.build/dicom-oct364-0.1.1-6/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-EA5j20)
untar (./dicom.tar, /var/tmp/oct-EA5j20)
dicominfo.cpp:96:49: error: invalid suffix on literal; C++11 requires a space 
between literal and identifier [-Wreserved-user-defined-literal]
 @deftypefn {Loadable Function} {@var{info}} = QUOTED(OCT_FN_NAME) 
(@var{filename}) \n\
^
 
dicominfo.cpp:97:50: error: invalid suffix on literal; C++11 requires a space 
between literal and identifier [-Wreserved-user-defined-literal]
 @deftypefnx {Loadable Function} {@var{info}} = QUOTED(OCT_FN_NAME) 
(@var{filename}, @code{dictionary}, @var{dictionary-name}) \n\
 ^
  
dicominfo.cpp:98:39: error: invalid suffix on literal; C++11 requires a space 
between literal and identifier [-Wreserved-user-defined-literal]
 @deftypefnx  {Loadable Function} {} QUOTED(OCT_FN_NAME) (@var{filename}, 
@var{options}) \n\
  ^
   
dicominfo.cpp:99:28: error: invalid suffix on literal; C++11 requires a space 
between literal and identifier [-Wreserved-user-defined-literal]
 @deftypefnx {Command} {} QUOTED(OCT_FN_NAME) @var{filename} \n\
   ^

dicominfo.cpp:100:28: error: invalid suffix on literal; C++11 requires a space 
between literal and identifier [-Wreserved-user-defined-literal]
 @deftypefnx {Command} {} QUOTED(OCT_FN_NAME) @var{filename} @var{options} \n\
   ^

5 errors generated.
make: *** [dicominfo.o] Error 1
'make' returned the following error: make: Entering directory 
`/private/var/tmp/oct-EA5j20/dicom/src'
mkoctfile -c  -g dicominfo.cpp
make: Leaving directory `/private/var/tmp/oct-EA5j20/dicom/src'
error: called from 'pkgconfigure_make' in file 
/sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
error: called from:
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
error:   /sw64/src/fink.build/dicom-oct364-0.1.1-6/dicom/octave-forge-comp at 
line 4, column 1
### execution of /tmp/fink.o0MJn failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-dicom-oct364-0.1.1-6
(Reading database ... 270611 files and directories currently installed.)
Removing fink-buildlock-dicom-oct364-0.1.1-6 ...
Failed: phase compiling: dicom-oct364-0.1.1-6 failed

TIA

Dominique

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[Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed

2013-11-18 Thread Dominique Dhumieres
Installing vtk510-5.10.1-1 on

Package manager version: 0.36.1
Distribution version: selfupdate-cvs Mon Nov 18 21:07:34 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.2
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  1

failed with

...
Linking C shared library ../../bin/libvtktiff.dylib
cd /sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtktiff  
/sw64/bin/cmake -E cmake_link_script CMakeFiles/vtktiff.dir/link.txt --verbose=1
/usr/bin/cc-g -isysroot 
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
 -mmacosx-version-min=10.9 -dynamiclib -Wl,-headerpad_max_install_names  
-L/sw64/lib  -compatibility_version 5.10.0 -current_version 5.10.1 -o 
../../bin/libvtktiff.5.10.1.dylib -install_name 
/sw64/lib/vtk510/libvtktiff.5.10.dylib CMakeFiles/vtktiff.dir/tif_aux.c.o 
CMakeFiles/vtktiff.dir/tif_close.c.o CMakeFiles/vtktiff.dir/tif_codec.c.o 
CMakeFiles/vtktiff.dir/tif_compress.c.o CMakeFiles/vtktiff.dir/tif_dir.c.o 
CMakeFiles/vtktiff.dir/tif_dirinfo.c.o CMakeFiles/vtktiff.dir/tif_dirread.c.o 
CMakeFiles/vtktiff.dir/tif_dirwrite.c.o CMakeFiles/vtktiff.dir/tif_dumpmode.c.o 
CMakeFiles/vtktiff.dir/tif_error.c.o CMakeFiles/vtktiff.dir/tif_fax3.c.o 
CMakeFiles/vtktiff.dir/tif_flush.c.o CMakeFiles/vtktiff.dir/tif_getimage.c.o 
CMakeFiles/vtktiff.dir/tif_jpeg.c.o CMakeFiles/vtktiff.dir/tif_luv.c.o 
CMakeFiles/vtktiff.dir/tif_lzw.c.o CMakeFiles/vtktiff.dir/tif_next.c.o CMakeFil
 es/vtktiff.dir/tif_ojpeg.c.o CMakeFiles/vtktiff.dir/tif_open.c.o 
CMakeFiles/vtktiff.dir/tif_packbits.c.o CMakeFiles/vtktiff.dir/tif_pixarlog.c.o 
CMakeFiles/vtktiff.dir/tif_predict.c.o CMakeFiles/vtktiff.dir/tif_print.c.o 
CMakeFiles/vtktiff.dir/tif_read.c.o CMakeFiles/vtktiff.dir/tif_strip.c.o 
CMakeFiles/vtktiff.dir/tif_swab.c.o CMakeFiles/vtktiff.dir/tif_thunder.c.o 
CMakeFiles/vtktiff.dir/tif_tile.c.o CMakeFiles/vtktiff.dir/tif_version.c.o 
CMakeFiles/vtktiff.dir/tif_warning.c.o CMakeFiles/vtktiff.dir/tif_write.c.o 
CMakeFiles/vtktiff.dir/tif_zip.c.o CMakeFiles/vtktiff.dir/tif_color.c.o 
CMakeFiles/vtktiff.dir/tif_extension.c.o CMakeFiles/vtktiff.dir/tif_unix.c.o 
CMakeFiles/vtktiff.dir/tif_fax3sm.c.o ../../bin/libvtkzlib.5.10.1.dylib 
../../bin/libvtkjpeg.5.10.1.dylib -lm 
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_close.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_codec.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_compress.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_dir.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_dirinfo.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_dirread.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_dirwrite.c.o
...
duplicate symbol ___sincospif in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_color.c.o
duplicate symbol ___sincospi in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_color.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_extension.c.o
duplicate symbol ___sputc in:
CMakeFiles/vtktiff.dir/tif_aux.c.o
CMakeFiles/vtktiff.dir/tif_unix.c.o
ld: 91 duplicate symbols for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [bin/libvtktiff.5.10.1.dylib] Error 1
make[2]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild'
make[1]: *** [Utilities/vtktiff/CMakeFiles/vtktiff.dir/all] Error 2
make[1]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild'
make: *** [all] Error 2
make: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild'
### execution of /tmp/fink.WSWvW failed, exit code 2
### execution of /tmp/fink.ocRJm failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-vtk510-5.10.1-1
(Reading database ... 259800 files and directories currently installed.)
Removing fink-buildlock-vtk510-5.10.1-1 ...
Reading buildlock packages...
/sw64/bin/dpkg-lockwait -i 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.7.3-1_darwin-x86_64.deb
Selecting previously deselected package openmpi.
(Reading database ... 259799 files and directories currently installed.)
Unpacking openmpi (from .../openmpi_1.7.3-1_darwin-x86_64.deb) ...
Setting up openmpi (1.7.3-1) ...
Clearing dependency_libs of .la files being installed

Failed: phase compiling: vtk510-5.10.1-1 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: ginac2-1.6.1-2 failed

2013-11-11 Thread Dominique Dhumieres
David,

 Could you (or anyone) please test it for me on xcode 5?

I have applied the patch and run 'sudo make' in the directory and its parent
without error. However I don't know how to do the packaging (what I can do
is expand the compressed tar, apply the patch, and compress the tar).
Is there any better solution?

Dominique

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Re: [Fink-users] Failed: phase compiling: ginac2-1.6.1-2 failed

2013-11-11 Thread Dominique Dhumieres

 (what I can do is expand the compressed tar, apply the patch, and compress 
 the tar).

And I updated the md5 value and the package installed without further problem.

Thanks for the patch,

Dominique

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Re: [Fink-users] Failed: phase compiling: ginac2-1.6.1-2 failed

2013-11-11 Thread Dominique Dhumieres
 ...  I have committed an update on the 10.7 tree that: ...

It works fine, thanks,

Dominique

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[Fink-users] Failed: phase compiling: ginac2-1.6.1-2 failed

2013-11-10 Thread Dominique Dhumieres
Installing ginac2-1.6.1-2 fails on

Package manager version: 0.36.0
Distribution version: selfupdate-rsync Sun Nov 10 13:41:46 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.1
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  1

with

/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../config   -I/sw64/include -I/sw64/include-g -O2 -MT inifcns_nstdsums.lo 
-MD -MP -MF .deps/inifcns_nstdsums.Tpo -c -o inifcns_nstdsums.lo 
inifcns_nstdsums.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../config -I/sw64/include 
-I/sw64/include -g -O2 -MT inifcns_nstdsums.lo -MD -MP -MF 
.deps/inifcns_nstdsums.Tpo -c inifcns_nstdsums.cpp  -fno-common -DPIC -o 
.libs/inifcns_nstdsums.o
inifcns_nstdsums.cpp:2604:18: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return e * (-H(lst(0),1/arg).hold());
   ^
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2635:16: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return e * H(lst(1),1-arg).hold();
 ^
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2667:34: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
ex addzeta = convert_H_to_zeta(lst(-1));
   ^~
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2668:28: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return (e * (addzeta - H(lst(-1),1/arg).hold())).expand();
 ^~
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2699:17: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return (e * H(lst(-1),(1-arg)/(1+arg)).hold()).expand();
  ^~
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2730:17: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return (e * H(lst(1),(1-arg)/(1+arg)).hold()).expand();
  ^
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2809:17: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
ex res = H(lst(1), arg).hold() * 
H(newparameter, arg).hold();
   ^
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2873:27: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return 
unify((pow(H(lst(-1),1/arg).hold() - H(lst(0),1/arg).hold(), parameter.nops())
^~
./container.h:145:2: note: candidate constructor
container(STLT const  s, bool discardable = false)
^
./container.h:167:11: note: candidate constructor
explicit container(const ex  p1)
 ^
inifcns_nstdsums.cpp:2873:53: error: ambiguous conversion for functional-style 
cast from 'int' to 'lst' (aka 'containerstd::list')
return 
unify((pow(H(lst(-1),1/arg).hold() - H(lst(0),1/arg).hold(), parameter.nops())

  ^

[Fink-users] Failed: phase compiling: symband-oct364-1.0.10-6 failed

2013-11-10 Thread Dominique Dhumieres
Alex,

I have tried to indtall the octave packages on

Package manager version: 0.36.0
Distribution version: selfupdate-rsync Sun Nov 10 13:41:46 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.1
Xcode command-line tools: 5.0.1.0.1.1382131676
symband-oct364-1.0.10-6 is set to build with only one job.

So far I have only been able to install

 i  actuarial-oct3641.1.0-3 Actuarial functions for Octave
 i  benchmark-oct3641.1.1-3 Benchmark the speed of Octave
 i  bioinfo-oct364  0.1.2-3 Bioinformatics manipulation for Octave
 i  cgi-oct364  0.1.0-1 Common Gateway Interface for Octave
 i  civil-engineering-oct3641.0.7-3 Octave Civil Engineering ODEs
 i  dataframe-oct3640.9.1-3 Octave data manipulation toolbox
 i  fpl-oct364  1.3.4-1 Save Octave data in graphical formats
 i  gnuplot-oct364  1.0.1-5 Octave scripts for gnuplot
 i  plot-oct364 1.1.0-2 Additional plotting tools for Octave
 i  splines-oct364  1.2.4-1 Additional Cubic spline functions for Octave
 i  zenity-oct364   0.5.7-4 Zenity-based tools for Octave

Several packages fail to install as symband-oct364-1.0.10-6:

ans = 
/sw64/src/fink.build/symband-oct364-1.0.10-6/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-PeHrc5)
untar (./symband.tar, /var/tmp/oct-PeHrc5)
/sw64/bin/mkoctfile: line 513: oct-cxx: command not found
make: *** [SymBand.oct] Error 127
'make' returned the following error: mkoctfile SymBand.cc
error: called from 'pkgconfigure_make' in file 
/sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
error: called from:
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
error:   /sw64/src/fink.build/symband-oct364-1.0.10-6/bld/octave-forge-comp at 
line 4, column 1
### execution of /tmp/fink.D_Xs5 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-symband-oct364-1.0.10-6
(Reading database ... 185980 files and directories currently installed.)
Removing fink-buildlock-symband-oct364-1.0.10-6 ...
Failed: phase compiling: symband-oct364-1.0.10-6 failed

i.e., oct-cxx: command not found.

TIA

Dominique

--
November Webinars for C, C++, Fortran Developers
Accelerate application performance with scalable programming models. Explore
techniques for threading, error checking, porting, and tuning. Get the most 
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Re: [Fink-users] Failed: phase compiling: symband-oct364-1.0.10-6 failed

2013-11-10 Thread Dominique Dhumieres

 Try editing /sw/bin/mkoctfile-3.6.4 as a superuser and change all of the
 instances of oct-cc to /sw/var/lib/fink/path-prefix-clang/cc and those
 of oct-cxx to /sw/var/lib/fink/path-prefix-clang/c++ .

Thanks for the tip. I had to edit /sw64/bin/mkoctfile also and
/sw64/var/lib/fink/path-prefix-clang did not exist (I copied the one
from 10.8. I am now stuck with the following failures

ans = 
/sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-Eeuiaz)
untar (./miscellaneous-1.2.0.tar, /var/tmp/oct-Eeuiaz)
Undefined symbols for architecture x86_64:
  check_version(std::string const, std::string const), referenced from:
  _Gcell2cell in cell2cell.o
  octave_dld_function::create(octave_value_list (*)(octave_value_list const, 
int), octave_shlib const, std::string const, std::string const), referenced 
from:
  _Gcell2cell in cell2cell.o
  std::string::_Rep::_M_destroy(std::allocatorchar const), referenced from:
  _Gcell2cell in cell2cell.o
  Fcell2cell(octave_value_list const, int) in cell2cell.o
  Arraystd::string::ArrayRep::~ArrayRep() in cell2cell.o
  std::string::_Rep::_M_dispose(std::allocatorchar const), referenced from:
  _Gcell2cell in cell2cell.o
  Fcell2cell(octave_value_list const, int) in cell2cell.o
  std::string::_Rep::_S_empty_rep_storage, referenced from:
  _Gcell2cell in cell2cell.o
  Fcell2cell(octave_value_list const, int) in cell2cell.o
  Arraystd::string::ArrayRep::~ArrayRep() in cell2cell.o
  std::basic_stringchar, std::char_traitschar, std::allocatorchar 
::basic_string(char const*, std::allocatorchar const), referenced from:
  _Gcell2cell in cell2cell.o
  Fcell2cell(octave_value_list const, int) in cell2cell.o
  std::ios_base::Init::Init(), referenced from:
  __GLOBAL__sub_I_cell2cell.cc in cell2cell.o
  std::ios_base::Init::~Init(), referenced from:
  __GLOBAL__sub_I_cell2cell.cc in cell2cell.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [cell2cell.oct] Error 1
'make' returned the following error: mkoctfile -Wall cell2cell.cc
error: called from 'pkgconfigure_make' in file 
/sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
error: called from:
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
error:   /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
error:   
/sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/octave-forge-comp at line 
4, column 1
### execution of /tmp/fink.0wN0_ failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-miscellaneous-oct364-1.2.0-3
(Reading database ... 186574 files and directories currently installed.)
Removing fink-buildlock-miscellaneous-oct364-1.2.0-3 ...
Failed: phase compiling: miscellaneous-oct364-1.2.0-3 failed

and

ans = 
/sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-yjNzF3)
untar (./odepkg.tar, /var/tmp/oct-yjNzF3)
checking for gcc... /sw64/var/lib/fink/path-prefix-clang/cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /sw64/var/lib/fink/path-prefix-clang/cc accepts -g... yes
checking for /sw64/var/lib/fink/path-prefix-clang/cc option to accept ISO 
C89... none needed
checking for mkoctfile... /sw64/bin/mkoctfile-3.6.4
retrieving compile and link flags from /sw64/bin/mkoctfile-3.6.4
checking for F77_FUNC... yes
checking for octave... /sw64/bin/octave-3.6.4
checking for OCTAVE_VERSION in Octave... 3.6.4
checking for octave_config_info('canonical_host_type') in Octave... 
x86_64-apple-darwin
checking for octave_config_info('SHLEXT') in Octave... dylib
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for strip... strip
configure: creating ./config.status
config.status: creating Makeconf
 
  $prefix is 
/sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages/odepkg-0.8.4
  $exec_prefix is ${prefix}

octave commands will install into the following directories:
   m-files:   /sw64/share/octave/3.6.4/site/m/octave-forge
   oct-files: /sw64/lib/octave/3.6.4/site/oct/x86_64-apple-darwin/octave-forge
   binaries:  /sw64/lib/octave/3.6.4/site/exec/x86_64-apple-darwin
alternatives:
   m-files:   /sw64/share/octave/3.6.4/site/octave-forge-alternatives/m
   oct-files: 
/sw64/lib/octave/3.6.4/site/octave-forge-alternatives/oct/x86_64-apple-darwin

shell commands will install into the following directories:
   binaries:  ${exec_prefix}/bin
   man pages: ${datarootdir}/man
   libraries: ${exec_prefix}/lib
   headers:   ${prefix}/include

octave-forge is configured with
   octave:  

Re: [Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-05 Thread Dominique Dhumieres
 I just checked 3.1.3-4 into CVS.  I haven't quite built up the 
 dependencies yet on 10.9 to test it myself, but the pkgconfig logic 
 works in arpack-ng-mpi (I didn't need any extra depedencies to build 
 that).  Let me know how it works.

Thanks for the fix, but now the build fails with

...
Making all in .
/bin/sh ../libtool --tag=F77   --mode=link /sw64/bin/mpif77  -g -O2 
-no-undefined -version-info 2:0 -L/sw64/lib/openmpi -Wl,-dead_strip_dylibs 
-L/sw64/lib -o libparpack.la -rpath /sw64/lib/arpack-ng-atlas  
../SRC/libarpacksrc.la ../UTIL/libarpackutil.la 
../PARPACK/SRC/MPI/libparpacksrcmpi.la ../PARPACK/UTIL/MPI/libparpackutilmpi.la 
-ltatlas -ltatlas 
libtool: link: /sw64/bin/gfortran-fsf-4.8 -dynamiclib  -o 
.libs/libparpack.2.dylib   -Wl,-force_load ../SRC/.libs/libarpacksrc.a 
-Wl,-force_load ../UTIL/.libs/libarpackutil.a -Wl,-force_load 
../PARPACK/SRC/MPI/.libs/libparpacksrcmpi.a -Wl,-force_load 
../PARPACK/UTIL/MPI/.libs/libparpackutilmpi.a  -L/sw64/lib/openmpi -L/sw64/lib 
-ltatlas  -O2 -Wl,-dead_strip_dylibs   -install_name  
/sw64/lib/arpack-ng-atlas/libparpack.2.dylib -compatibility_version 3 
-current_version 3.0 -Wl,-single_module
Undefined symbols for architecture x86_64:
  _mpi_allreduce_, referenced from:
  _psgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psgetv0.o)
  _psnaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaitr.o)
  _psnaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaup2.o)
  _pssaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaitr.o)
  _pssaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaup2.o)
  _psnorm2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnorm2.o)
  _pdgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdgetv0.o)
  ...
  _mpi_comm_rank_, referenced from:
  _psnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaupd.o)
  _pssaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaupd.o)
  _pdnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdnaupd.o)
  _pdsaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdsaupd.o)
  _pcnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcnaupd.o)
  _pcgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcgetv0.o)
  _pznaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pznaupd.o)
  ...
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
make[2]: *** [libparpack.la] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1
### execution of /tmp/fink.BbgY5 failed, exit code 2
### execution of /tmp/fink.wnvHP failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-arpack-ng-mpi-atlas-3.1.3-4
(Reading database ... 80270 files and directories currently installed.)
Removing fink-buildlock-arpack-ng-mpi-atlas-3.1.3-4 ...
Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-4 failed

Dominique

--
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[Fink-users] Failed: phase compiling: cln6-1.3.3-1 failed

2013-11-05 Thread Dominique Dhumieres
Installing cln6-1.3.3-1 on

Package manager version: 0.36.0
Distribution version: selfupdate-rsync Tue Nov  5 09:23:30 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.1
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  8

failed with

...
Making all in src
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_alloca.lo -MD -MP -MF .deps/cl_alloca.Tpo -c -o cl_alloca.lo `test 
-f 'base/cl_alloca.cc' || echo './'`base/cl_alloca.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_as_exception.lo -MD -MP -MF .deps/cl_as_exception.Tpo -c -o 
cl_as_exception.lo `test -f 'base/cl_as_exception.cc' || echo 
'./'`base/cl_as_exception.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_condition.lo -MD -MP -MF .deps/cl_condition.Tpo -c -o 
cl_condition.lo `test -f 'base/cl_condition.cc' || echo 
'./'`base/cl_condition.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_d0_exception.lo -MD -MP -MF .deps/cl_d0_exception.Tpo -c -o 
cl_d0_exception.lo `test -f 'base/cl_d0_exception.cc' || echo 
'./'`base/cl_d0_exception.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_debug.lo -MD -MP -MF .deps/cl_debug.Tpo -c -o cl_debug.lo `test -f 
'base/cl_debug.cc' || echo './'`base/cl_debug.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_debugout.lo -MD -MP -MF .deps/cl_debugout.Tpo -c -o cl_debugout.lo 
`test -f 'base/cl_debugout.cc' || echo './'`base/cl_debugout.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_free.lo -MD -MP -MF .deps/cl_free.Tpo -c -o cl_free.lo `test -f 
'base/cl_free.cc' || echo './'`base/cl_free.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_immclasses.lo -MD -MP -MF .deps/cl_immclasses.Tpo -c -o 
cl_immclasses.lo `test -f 'base/cl_immclasses.cc' || echo 
'./'`base/cl_immclasses.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_d0_exception.lo -MD -MP -MF 
.deps/cl_d0_exception.Tpo -c base/cl_d0_exception.cc  -fno-common -DPIC -o 
.libs/cl_d0_exception.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_as_exception.lo -MD -MP -MF 
.deps/cl_as_exception.Tpo -c base/cl_as_exception.cc  -fno-common -DPIC -o 
.libs/cl_as_exception.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_debug.lo -MD -MP -MF 
.deps/cl_debug.Tpo -c base/cl_debug.cc  -fno-common -DPIC -o .libs/cl_debug.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_alloca.lo -MD -MP -MF 
.deps/cl_alloca.Tpo -c base/cl_alloca.cc  -fno-common -DPIC -o .libs/cl_alloca.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_condition.lo -MD -MP -MF 
.deps/cl_condition.Tpo -c base/cl_condition.cc  -fno-common -DPIC -o 
.libs/cl_condition.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_free.lo -MD -MP -MF 
.deps/cl_free.Tpo -c base/cl_free.cc  -fno-common -DPIC -o .libs/cl_free.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_immclasses.lo -MD -MP -MF 
.deps/cl_immclasses.Tpo -c base/cl_immclasses.cc  -fno-common -DPIC -o 
.libs/cl_immclasses.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_debugout.lo -MD -MP -MF 
.deps/cl_debugout.Tpo -c base/cl_debugout.cc  -fno-common -DPIC -o 
.libs/cl_debugout.o
In file included from In file included from 
base/cl_alloca.ccbase/cl_free.cc::44:
:
In file included from In file included from 
./base/cl_sysdep.h./base/cl_sysdep.h::5656:
:
In file included from In file included from 
./base/cl_macros.h./base/cl_macros.h::77:
:
../include/cln/exception.h../include/cln/exception.h::14In file included from 

Re: [Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-05 Thread Dominique Dhumieres
 Try using a single build job ...

How can I do that?

Dominique

--
November Webinars for C, C++, Fortran Developers
Accelerate application performance with scalable programming models. Explore
techniques for threading, error checking, porting, and tuning. Get the most 
from the latest Intel processors and coprocessors. See abstracts and register
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Re: [Fink-users] Failed: phase compiling: cln6-1.3.3-1 failed

2013-11-05 Thread Dominique Dhumieres
 Could you retry with only one build job?

...
Making all in src
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. 
-I../autoconf  -I../include -I../src -I../include -I../src -I/sw64/include  -g 
-O2 -MT cl_alloca.lo -MD -MP -MF .deps/cl_alloca.Tpo -c -o cl_alloca.lo `test 
-f 'base/cl_alloca.cc' || echo './'`base/cl_alloca.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../autoconf -I../include -I../src 
-I../include -I../src -I/sw64/include -g -O2 -MT cl_alloca.lo -MD -MP -MF 
.deps/cl_alloca.Tpo -c base/cl_alloca.cc  -fno-common -DPIC -o .libs/cl_alloca.o
In file included from base/cl_alloca.cc:4:
In file included from ./base/cl_sysdep.h:56:
In file included from ./base/cl_macros.h:7:
../include/cln/exception.h:14:24: error: implicit instantiation of undefined 
template 'std::__1::basic_stringchar, std::__1::char_traitschar,
  std::__1::allocatorchar '
: std::runtime_error(std::string()) {}
 ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iosfwd:187:28:
 note: template is declared here
class _LIBCPP_TYPE_VIS basic_string;
   ^
1 error generated.
make[1]: *** [cl_alloca.lo] Error 1
make: *** [all-recursive] Error 1
### execution of make failed, exit code 2
### execution of /tmp/fink.eYp4S failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-cln6-1.3.3-1
(Reading database ... 80270 files and directories currently installed.)
Removing fink-buildlock-cln6-1.3.3-1 ...
Failed: phase compiling: cln6-1.3.3-1 failed

Dominique

--
November Webinars for C, C++, Fortran Developers
Accelerate application performance with scalable programming models. Explore
techniques for threading, error checking, porting, and tuning. Get the most 
from the latest Intel processors and coprocessors. See abstracts and register
http://pubads.g.doubleclick.net/gampad/clk?id=60136231iu=/4140/ostg.clktrk
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Re: [Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-05 Thread Dominique Dhumieres
Alex,

I have found the problem: 'sw' is hardcoded in

libs=`PKG_CONFIG_PATH=/sw/lib/openmpi/pkgconfig pkg-config --libs 
ompi-f77 | cut -d\  -f2- `

If I replace 'sw' with 'sw64', everything works fine.

Dominique

--
November Webinars for C, C++, Fortran Developers
Accelerate application performance with scalable programming models. Explore
techniques for threading, error checking, porting, and tuning. Get the most 
from the latest Intel processors and coprocessors. See abstracts and register
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[Fink-users] Failed: phase compiling: octave-atlas-3.6.4-5 failed

2013-11-05 Thread Dominique Dhumieres
Building octave-atlas-3.6.4-5 on

Package manager version: 0.36.0
Distribution version: selfupdate-rsync Tue Nov  5 19:17:20 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.1
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  1

failed with

...
libtool: compile:  flag-sort -r g++ -DHAVE_CONFIG_H -I. -I.. -I../libgnu 
-I../libgnu -I../libcruft/misc -I../liboctave -I../liboctave -I. -I. 
-I/sw64/include -I/sw64/include -O3 -MD -I/usr/X11/include -DHAVE_CONFIG_H 
-I/sw64/include -I/sw64/include/freetype2 -I/sw64/include -I/sw64/include -Wall 
-W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith -Wwrite-strings 
-Wcast-align -Wcast-qual -O3 -MD -I/usr/X11/include -D_THREAD_SAFE -pthread -O3 
-MD -I/usr/X11/include -MT DLD-FUNCTIONS/rand.lo -MD -MP -MF 
DLD-FUNCTIONS/.deps/rand.Tpo -c DLD-FUNCTIONS/rand.cc  -fno-common -DPIC -o 
DLD-FUNCTIONS/.libs/rand.o
In file included from DLD-FUNCTIONS/rand.cc:41:
In file included from ./defun-dld.h:30:
In file included from ./defun-int.h:28:
In file included from ./ov-builtin.h:28:
In file included from ./ov-fcn.h:35:
In file included from ./symtab.h:34:
../liboctave/regexp.h:90:3: warning: 'opts' defined as a struct here but 
previously declared as a class [-Wmismatched-tags]
  struct opts
  ^
../liboctave/regexp.h:40:3: note: did you mean struct here?
  class opts;
  ^
  struct
In file included from DLD-FUNCTIONS/rand.cc:47:
In file included from ./ov-re-mat.h:39:
./ov-base-mat.h:95:8: warning: 'octave_base_matrixNDArray::assign' hides 
overloaded virtual function [-Woverloaded-virtual]
  void assign (const octave_value_list idx, const MT rhs);
   ^
./ov-re-mat.h:52:24: note: in instantiation of template class 
'octave_base_matrixNDArray' requested here
octave_matrix : public octave_base_matrixNDArray
   ^
./ov-base.h:277:16: note: hidden overloaded virtual function 
'octave_base_value::assign' declared here
  virtual void assign (const std::string, const octave_value) { }
   ^
In file included from DLD-FUNCTIONS/rand.cc:47:
In file included from ./ov-re-mat.h:39:
./ov-base-mat.h:97:8: warning: 'octave_base_matrixNDArray::assign' hides 
overloaded virtual function [-Woverloaded-virtual]
  void assign (const octave_value_list idx, typename MT::element_type rhs);
   ^
./ov-base.h:277:16: note: hidden overloaded virtual function 
'octave_base_value::assign' declared here
  virtual void assign (const std::string, const octave_value) { }
   ^
DLD-FUNCTIONS/rand.cc:1036:12: error: no member named 'tr1' in namespace 'std'
using std::tr1::unordered_map;
  ~^
DLD-FUNCTIONS/rand.cc:1080:15: error: no template named 'unordered_map'; did 
you mean 'std::unordered_map'?
  unordered_mapoctave_idx_type, octave_idx_type map (m);
  ^
  std::unordered_map
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/unordered_map:663:24:
 note: 'std::unordered_map'
  declared here
class _LIBCPP_TYPE_VIS unordered_map
   ^
3 warnings and 2 errors generated.
make[1]: *** [DLD-FUNCTIONS/rand.lo] Error 1
make: *** [all] Error 2
### execution of /tmp/fink.uCsP8 failed, exit code 2
### execution of /tmp/fink.xUj4C failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-octave-atlas-3.6.4-5
(Reading database ... 80456 files and directories currently installed.)
Removing fink-buildlock-octave-atlas-3.6.4-5 ...
Failed: phase compiling: octave-atlas-3.6.4-5 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.6.4-5 failed

2013-11-05 Thread Dominique Dhumieres
With

 SetCC: flag-sort -r gcc-fsf-4.8
 SetCXX: flag-sort -r g++-fsf-4.8

the build fails with

...
libtool: link: flag-sort -r g++-fsf-4.8  -o 
DLD-FUNCTIONS/.libs/__magick_read__.so -bundle  
DLD-FUNCTIONS/.libs/DLD_FUNCTIONS___magick_read___la-__magick_read__.o   
-L/sw64/lib ./.libs/liboctinterp.dylib -L/sw64/lib/gcc4.8/lib 
-L/sw64/lib/libpcre1 -L/sw64/lib/fltk13-aqua/lib -L/usr/X11/lib 
../liboctave/.libs/liboctave.dylib ../libcruft/.libs/libcruft.dylib 
/sw64/lib/libGraphicsMagick++.dylib /sw64/lib/libGraphicsMagick.dylib -lm  -O3 
-O3 -pthread -O3 -Wl,-dead_strip_dylibs -Wl,-dead_strip_dylibs -Wl,-dylib_file 
-Wl,/sw64/lib/octave/3.6.4/liboctave.1.dylib:/sw64/src/fink.build/octave-atlas-3.6.4-5/octave-3.6.4/liboctave/.libs/liboctave.dylib
 -Wl,-dylib_file 
-Wl,/sw64/lib/octave/3.6.4/libcruft.1.dylib:/sw64/src/fink.build/octave-atlas-3.6.4-5/octave-3.6.4/libcruft/.libs/libcruft.dylib
 -Wl,-dylib_file 
-Wl,/sw64/lib/octave/3.6.4/libcruft.1.dylib:/sw64/src/fink.build/octave-atlas-3.6.4-5/octave-3.6.4/libcruft/.libs/libcruft.dylib
   -pthread -framework AGL -framework OpenGL -framework Appl
 icationServices -framework Cocoa
Undefined symbols for architecture x86_64:
  Magick::CoderInfo::CoderInfo(std::basic_stringchar, std::char_traitschar, 
std::allocatorchar  const), referenced from:
  F__magick_format_list__(octave_value_list const, int) in 
DLD_FUNCTIONS___magick_read___la-__magick_read__.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status

Dominique

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[Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-04 Thread Dominique Dhumieres
Installing arpack-ng-mpi-atlas-3.1.3-3 on

Package manager version: 0.36.0
Distribution version: selfupdate-rsync Mon Nov  4 07:53:13 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.1
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  8

failed with

configure: error: in 
`/sw64/src/fink.build/arpack-ng-mpi-atlas-3.1.3-3/arpack-ng-3.1.3':
configure: error: Fortran 77 compiler cannot create executables
See `config.log' for more details
### execution of /tmp/fink.b3OVv failed, exit code 77
### execution of /tmp/fink.VmQBZ failed, exit code 77
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-arpack-ng-mpi-atlas-3.1.3-3
(Reading database ... 80018 files and directories currently installed.)
Removing fink-buildlock-arpack-ng-mpi-atlas-3.1.3-3 ...
Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

The error in config.log is

configure:2892: checking whether the Fortran 77 compiler works
configure:2914: /sw64/bin/gfortran-fsf-4.8  -Wl,-dead_strip_dylibs -L/sw64/lib 
-L/sw64/lib/openmpi conftest.f -lmpi_f77 5
ld: library not found for -lmpi_f77

TIA

Dominique

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[Fink-users] Failed: phase installing: llvm-gcc42-2336.11-107 failed

2013-10-11 Thread Dominique Dhumieres
Installing llvm-gcc42-2336.11-107 on

Package manager version: 0.35.2
Distribution version: selfupdate-rsync Fri Oct 11 08:07:49 2013, 10.8, x86_64
Trees: local/main stable/main
Xcode.app: 5.0
Xcode command-line tools: 5.0.0.0.1.1377666378
llvm-gcc42-2336.11-107 is set to build with only one job.

failed with

  # remove llvm-gcc-4.2 as gcc
  rm /sw64/src/fink.build/root-llvm-gcc42-2336.11-107/sw64/bin/gcc 
/sw64/src/fink.build/root-llvm-gcc42-2336.11-107/sw64/bin/x86_64-apple-darwin*-gcc
rm: /sw64/src/fink.build/root-llvm-gcc42-2336.11-107/sw64/bin/gcc: No such file 
or directory
rm: 
/sw64/src/fink.build/root-llvm-gcc42-2336.11-107/sw64/bin/x86_64-apple-darwin*-gcc:
 No such file or directory
### execution of /tmp/fink.OWqAv failed, exit code 1
### execution of /tmp/fink.KWkVT failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-llvm-gcc42-2336.11-107
(Reading database ... 48570 files and directories currently installed.)
Removing fink-buildlock-llvm-gcc42-2336.11-107 ...
Failed: phase installing: llvm-gcc42-2336.11-107 failed

TIA

Dominique


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Re: [Fink-users] Failed: phase installing: llvm-gcc42-2336.11-107 failed

2013-10-11 Thread Dominique Dhumieres
Hi Jack,

I have found the problem: 'sw' is hardcoded in

/sw64/fink/10.7/stable/main/finkinfo/languages/llvm-gcc42-10.8.info

as

tar -cpf - sw | (cd %d ; tar xpf -)

So the build works if fink directory is 'sw', but not otherwise.
In my case, the install succeeds if I replace 'sw' with 'sw64'.

Thanks for the quick answer.

Dominique

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[Fink-users] The checksum of the file netcdf-1.0.1.tar.gz ... is incorrect. ...

2013-09-09 Thread Dominique Dhumieres
Alex,

Updating to netcdf-1.0.1 fails at download with

...
The checksum of the file is incorrect. The most likely cause for this is a
corrupted or incomplete download
Expected: baf557065bb28203e39537f7c600bcd9
Actual: MD5(18506d23276dabb544c7d11dcd9f9d16)
SHA1(ba8fc62ef2e04bd34104f8bd8b6e4eb9176bdb07)
Downloading the file netcdf-1.0.1.tar.gz failed.
...

TIA

Dominique

PS Reminder; on x86_64, OSX 10.6:

[macbook] dominiq/Downloads% sudo acoc fink update bundle-octave305-atlas
Can't resolve dependency imagemagick7-dev for package
image-oct305-1.0.8-23 (no matching packages/versions found)
Exiting with failure.
[macbook] dominiq/Downloads% sudo acoc fink update bundle-octave324-atlas
Can't resolve dependency openmpi-ext-oct324 for package
bundle-octave324-atlas-20130908-1 (no matching packages/versions found)
Exiting with failure.
[macbook] dominiq/Downloads% sudo acoc fink update bundle-octave343-atlas
Can't resolve dependency openmpi-ext-oct343 for package
bundle-octave343-atlas-20130908-1 (no matching packages/versions found)
Exiting with failure.

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Re: [Fink-users] The checksum of the file netcdf-1.0.1.tar.gz ... is incorrect. ...

2013-09-09 Thread Dominique Dhumieres
 Thanks.  I completely forgot about the latter 3 problems; hopefully the
 changes I just made should address those.

Alex,

Thanks for the fixes. I am left with

Can't resolve dependency liboctave343-gcc48-dev for package
netcdf-oct343-1.0.1-1 (no matching packages/versions found)
Exiting with failure.


TIA

Dominique

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Re: [Fink-users] Wrong signature for control-atlas-oct36*

2013-07-31 Thread Dominique Dhumieres
 It's now fixed in CVS.

Confirmed, thanks,

Dominique

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[Fink-users] bundle-octave3(05|24|43) exit with failures

2013-07-31 Thread Dominique Dhumieres
Alex,

Last octave glitches on intel 10.6:

[macbook] f90/bug% sudo acoc fink install bundle-octave305-atlas
Can't resolve dependency imagemagick7-dev for package
image-oct305-1.0.8-23 (no matching packages/versions found)
Exiting with failure.
[macbook] f90/bug% sudo acoc fink install bundle-octave324-atlas
Can't resolve dependency openmpi-ext-oct324 for package
bundle-octave324-atlas-20130219-5 (no matching packages/versions found)
Exiting with failure.
[macbook] f90/bug% sudo acoc fink install bundle-octave343-atlas
Can't resolve dependency openmpi-ext-oct343 for package
bundle-octave343-atlas-20130219-5 (no matching packages/versions found)
Exiting with failure.

TIA

Dominique

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[Fink-users] Wrong signature for control-atlas-oct36*

2013-07-30 Thread Dominique Dhumieres
Updating control-atlas-oct36* to 2.4.3-1 fails at download
with

The checksum of the file is incorrect. The most likely cause for this is a
corrupted or incomplete download
Expected: e5baef56938883062f185077f2050db6
Actual: MD5(149d5d0be0e6af3b589417ba3a675e52)
SHA1(d1db6cd02d04715655d9d2c7ba5b75a89c10fb68)
Downloading the file control-2.4.3.tar.gz failed.

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: gcc48-4.8.1-1000 failed

2013-06-01 Thread Dominique Dhumieres
Jack,

Before entering how the different gcc are installed on my system,
let me say that the following change allowed me to update gcc48

[karma] /Users/dominiq% diff /sw/var/lib/fink/path-prefix-g++-4.0/g++~ 
/sw/var/lib/fink/path-prefix-g++-4.0/g++
5c5
 exec g++-4.0 $@
---
 exec g++-4.2 $@

So IMO the question is what the use of /sw/var/lib/fink/path-prefix-g++-4.0?

For my setup the default gcc/g++ is
gcc version 4.9.0 20130426 (experimental) [trunk revision 198347] (GCC) 
and /usr/bin/gcc(g++)
gcc version 4.2.1 (Apple Inc. build 5577)

Thanks for the quick answer,

Dominique

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[Fink-users] Failed: phase compiling: gcc48-4.8.1-1000 failed

2013-05-31 Thread Dominique Dhumieres
Jack,

Updating to gcc48-4.8.1-1000 failed on

Package manager version: 0.34.8
Distribution version: selfupdate-rsync Fri May 31 17:04:22 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

with

g++ -c   -g -DIN_GCC   -fno-exceptions -fno-rtti -fasynchronous-unwind-tables 
-W -Wall -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -pedantic 
-Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H 
-DGENERATOR_FILE -I. -Ibuild -I../../gcc-4.8.1/gcc -I../../gcc-4.8.1/gcc/build 
-I../../gcc-4.8.1/gcc/../include -I../../gcc-4.8.1/gcc/../libcpp/include 
-I/sw/include -I/sw/include  -I../../gcc-4.8.1/gcc/../libdecnumber 
-I../../gcc-4.8.1/gcc/../libdecnumber/dpd -I../libdecnumber 
-I../../gcc-4.8.1/gcc/../libbacktrace -DCLOOG_INT_GMP -I/sw/include 
-I/sw/include -I/sw/include \
-o build/genconstants.o ../../gcc-4.8.1/gcc/genconstants.c
cc1plus: error: unrecognized command line option -Wno-overlength-strings
make[3]: *** [build/genconstants.o] Error 1
make[3]: Leaving directory 
`/sw/src/fink.build/gcc48-4.8.1-1000/darwin_objdir/gcc'
make[2]: *** [all-stage1-gcc] Error 2
make[2]: Leaving directory `/sw/src/fink.build/gcc48-4.8.1-1000/darwin_objdir'
make[1]: *** [stage1-bubble] Error 2
make[1]: Leaving directory `/sw/src/fink.build/gcc48-4.8.1-1000/darwin_objdir'
make: *** [bootstrap-lean] Error 2
### execution of /tmp/fink.eG7LQ failed, exit code 2
### execution of /tmp/fink.jsRUI failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gcc48-4.8.1-1000
(Reading database ... 579617 files and directories currently installed.)
Removing fink-buildlock-gcc48-4.8.1-1000 ...
Failed: phase compiling: gcc48-4.8.1-1000 failed

Digging the config.log file I have found

...
configure:4201: gcc --version 5
powerpc-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577)
...
configure:4711: checking for g++
configure:4727: found /sw/var/lib/fink/path-prefix-g++-4.0/g++
configure:4738: result: g++
configure:4765: checking for C++ compiler version
configure:4774: g++ --version 5
powerpc-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
...

So not only g++ is not synchronized with gcc, but g++ 4.0.1 does not support
-Wno-overlength-strings.

TIA

Dominique

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[Fink-users] Failed: phase compiling: xemacs-21.4.22-2 failed

2013-05-28 Thread Dominique Dhumieres
Updating to xemacs-21.4.22-2 failed on

Package manager version: 0.34.8
Distribution version: selfupdate-rsync Tue May 28 12:13:08 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

failed with

...
checking for gcc... gcc
configure: error: installation or configuration problem: C compiler cannot 
create executables.
checking whether the C compiler (gcc -O2 -g -std=c89 -Wl,-no_pie -L/sw/lib 
-L/sw/lib) works... no
### execution of /tmp/fink.7HnFL failed, exit code 1
### execution of /tmp/fink.1ORg2 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-xemacs-21.4.22-2
(Reading database ... 578218 files and directories currently installed.)
Removing fink-buildlock-xemacs-21.4.22-2 ...
Failed: phase compiling: xemacs-21.4.22-2 failed

From config.log, the error is

configure:1780: gcc -o conftest -O2 -g -std=c89 -I/sw/include  -Wl,-no_pie 
-L/sw/lib -L/sw/lib  conftest.c   15
ld: unknown option: -no_pie

AFAICT there is no gcc on ppc accepting -Wl,-no_pie.

TIA

Dominique

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[Fink-users] Octave glitches

2013-05-28 Thread Dominique Dhumieres
On Core2Duo OSX 10.6.8, I see the following glitches:

Can't resolve dependency liboctave343-gcc48-dev for package
io-oct343-1.2.2-1 (no matching packages/versions found)

and

Failed: Illegal version specification '= 4.0.2-2) (-atlas = -atlas) 
atlas-shlibs (= 3.10.1-1' for package suitesparse-shlibs

TIA

Dominique

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[Fink-users] Failed: phase compiling: hdf5.8-1.8.11-1 failed

2013-05-27 Thread Dominique Dhumieres
Updating to hdf5.8-1.8.11-1 failed on

Package manager version: 0.34.8
Distribution version: selfupdate-rsync Mon May 27 14:25:19 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

with

checking for gcc... clang
checking whether the C compiler works... no
configure: error: in `/sw/src/fink.build/hdf5.8-1.8.11-1/hdf5-1.8.11':
configure: error: C compiler cannot create executables
See `config.log' for more details
### execution of /tmp/fink.8D6_P failed, exit code 77
### execution of /tmp/fink.4vORd failed, exit code 77
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-hdf5.8-1.8.11-1
(Reading database ... 578324 files and directories currently installed.)
Removing fink-buildlock-hdf5.8-1.8.11-1 ...
Failed: phase compiling: hdf5.8-1.8.11-1 failed

The relevant part of the config.log is

...
configure:4220: checking for gcc
configure:4247: result: clang
configure:4476: checking for C compiler version
configure:4485: clang --version 5
./configure: line 4487: clang: command not found
configure:4496: $? = 127
configure:4485: clang -v 5
./configure: line 4487: clang: command not found
configure:4496: $? = 127
configure:4485: clang -V 5
./configure: line 4487: clang: command not found
configure:4496: $? = 127
configure:4485: clang -qversion 5
./configure: line 4487: clang: command not found
configure:4496: $? = 127
configure:4516: checking whether the C compiler works
configure:4538: clang-I/sw/include  -L/sw/lib conftest.c  5
./configure: line 4540: clang: command not found
configure:4542: $? = 127
configure:4580: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME HDF5
| #define PACKAGE_TARNAME hdf5
| #define PACKAGE_VERSION 1.8.11
| #define PACKAGE_STRING HDF5 1.8.11
| #define PACKAGE_BUGREPORT h...@hdfgroup.org
| #define PACKAGE_URL 
| #define PACKAGE hdf5
| #define VERSION 1.8.11
| /* end confdefs.h.  */
|
| int
| main ()
| {
|
|   ;
|   return 0;
| }
configure:4585: error: in `/sw/src/fink.build/hdf5.8-1.8.11-1/hdf5-1.8.11':
configure:4587: error: C compiler cannot create executables
See `config.log' for more details
...

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: hdf5.8-1.8.11-1 failed

2013-05-27 Thread Dominique Dhumieres
I think the problem is in

/sw/src/fink.build/hdf5.8-1.8.11-1/hdf5-1.8.11/config/powerpc-apple

# The default compiler is `clang'.
# No support for OS older than darwin 10.X.
if test X- = X-$CC; then
case $host_os in
darwin10.*) # Snow Leopard. Use gcc/g++ because clang++ is not 
available.
CC=gcc
CC_BASENAME=gcc
;;
*)
CC=clang
CC_BASENAME=clang
;;
esac
fi

On ppc the last darwin is darwin9 and has no clang (at least with Xcode 3.1.4).

Dominique

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[Fink-users] Can't resolve dependency liboctave343-gcc48-dev for package

2013-04-30 Thread Dominique Dhumieres
Alex,

I am almost done with octave* on intel 10.6, but for the following

(i)  statistics-oct305  1.1.3-4Additional 
statistics functions for Octave
(i)  statistics-oct324  1.1.3-4Additional 
statistics functions for Octave
(i)  statistics-oct343  1.1.3-4Additional 
statistics functions for Octave
(i)  symbolic-oct3241.1.0-3Symbolic toolbox for 
Octave

because of Can't resolve dependency liboctave343-gcc48-dev for package.

They all have liboctave3??-gcc46. How can I replace them with
liboctave3??-gcc48?

TIA

Dominique

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[Fink-users] Failed: phase compiling: tsa-oct364-4.2.4-7 failed

2013-04-28 Thread Dominique Dhumieres
Updating to tsa-oct364-4.2.4-7 failed on

Package manager version: 0.34.7
Distribution version: selfupdate-rsync Sun Apr 28 12:30:42 2013, 10.6, x86_64
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
tsa-oct364-4.2.4-7 is set to build with only one job.

with

pkgsrc=tsa
/sw64/share/fink-octave-scripts/octave-forge-patch.sh tsa 4.2.4 3.6.4 
/sw64/src/fink.build/tsa-oct364-4.2.4-7/tsa 
/sw64/src/fink.build/root-tsa-oct364-4.2.4-7/sw64 $pkgsrc
#!/bin/sh -ev
if [ $UID -ne 0 ]
then 
echo $1 cannot be built with --build-as-nobody
exit 1
fi
octvers=$3
subst1=s,@PKG@,$1,g
subst2=s,@PKGVERS@,$2,g
subst3=s,@OCTVERS@,$octvers,g
subst4=s,@BUILDDIR@,$4,g
subst5=s,@INSTDIR@,$5,g
subst6=s,@PKGSRC@,$6,g
for scriptfile in octave-forge-install.sh octave-forge-inst \
  octave-forge-postinst.sh 
octave-forge-postinst \
  octave-forge-prerm.sh octave-forge-prerm; do 
sed -e $subst1 -e $subst2 -e $subst3 -e $subst4 -e $subst5 
/sw64/share/fink-octave-scripts/$scriptfile.in  $scriptfile
chmod a+x $scriptfile
done
if [[ $octvers  3.4.0 ]] ; then

oc_shell_script=/sw64/share/fink-octave-scripts/octave-forge-compile-3.4.3.sh.in

oc_oct_script=/sw64/share/fink-octave-scripts/octave-forge-comp-3.4.3.in
else

oc_shell_script=/sw64/share/fink-octave-scripts/octave-forge-compile-3.0.5.sh.in

oc_oct_script=/sw64/share/fink-octave-scripts/octave-forge-comp-3.0.5.in
fi
sed -e $subst1 -e $subst3 -e $subst4 -e $subst6 $oc_shell_script  
octave-forge-compile.sh
sed -e $subst1 -e $subst3 -e $subst6 $oc_oct_script  octave-forge-comp
sed -e $subst3 -e $subst4 /sw64/share/fink-octave-scripts/genmkoctfile.sh.in  
genmkoctfile.sh
sed: impossible de lire /sw64/share/fink-octave-scripts/genmkoctfile.sh.in: No 
such file or directory
### execution of /tmp/fink.t7yY5 failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-tsa-oct364-4.2.4-7
(Reading database ... 530832 files and directories currently installed.)
Removing fink-buildlock-tsa-oct364-4.2.4-7 ...
Failed: phase compiling: tsa-oct364-4.2.4-7 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: tsa-oct364-4.2.4-7 failed

2013-04-28 Thread Dominique Dhumieres
 What do you get from
 dpkg -l fink-octave-scripts

Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Installed/Config-files/Unpacked/Failed-config/Half-installed
|/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err: uppercase=bad)
||/ NameVersion Description
+++-===-===-==
ii  fink-octave-scripts 0.2.0-1 Convenience 
scripts for Octave add-ons

 dpkg -L fink-octave-scripts

/.
/sw64
/sw64/share
/sw64/share/doc
/sw64/share/doc/fink-octave-scripts
/sw64/share/doc/fink-octave-scripts/Readme.md
/sw64/share/fink-octave-scripts
/sw64/share/fink-octave-scripts/octave-forge-comp-3.0.5.in
/sw64/share/fink-octave-scripts/octave-forge-comp-3.4.3.in
/sw64/share/fink-octave-scripts/octave-forge-compile-3.0.5.sh.in
/sw64/share/fink-octave-scripts/octave-forge-compile-3.4.3.sh.in
/sw64/share/fink-octave-scripts/octave-forge-inst.in
/sw64/share/fink-octave-scripts/octave-forge-install.sh.in
/sw64/share/fink-octave-scripts/octave-forge-patch.sh
/sw64/share/fink-octave-scripts/octave-forge-postinst.in
/sw64/share/fink-octave-scripts/octave-forge-postinst.sh.in
/sw64/share/fink-octave-scripts/octave-forge-prerm.in
/sw64/share/fink-octave-scripts/octave-forge-prerm.sh.in


Dominique

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Re: [Fink-users] Failed: phase compiling: tsa-oct364-4.2.4-7 failed

2013-04-28 Thread Dominique Dhumieres
 Could I please see the output from running fink rebuild
 fink-octave-scripts?

sudo -u fink-bld [ENV] sh -c /tmp/fink.3_0yH
unzip -o /sw64/src/fink-octave-scripts-0.2.0.zip
Archive:  /sw64/src/fink-octave-scripts-0.2.0.zip
704a46481fa174ca6c6a2e727f4a16c3e3eebc59
   creating: fink-octave-scripts-0.2.0/
  inflating: fink-octave-scripts-0.2.0/COPYING  
  inflating: fink-octave-scripts-0.2.0/NEWS  
  inflating: fink-octave-scripts-0.2.0/Readme.md  
  inflating: fink-octave-scripts-0.2.0/genmkoctfile.sh.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-comp-3.0.5.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-comp-3.4.3.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-compile-3.0.5.sh.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-compile-3.4.3.sh.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-inst.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-install.sh.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-patch.sh.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-postinst.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-postinst.sh  
  inflating: fink-octave-scripts-0.2.0/octave-forge-postinst.sh.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-prerm.in  
  inflating: fink-octave-scripts-0.2.0/octave-forge-prerm.sh.in  
sudo -u fink-bld [ENV] sh -c /tmp/fink.juO5P
sed -e 's,@FINKPREFIX@,/sw64,g' octave-forge-patch.sh.in  octave-forge-patch.sh
sed -i -e 's,@FINKPREFIX@,/sw64,g' octave-forge-comp*.in octave-forge-*inst*.in 
octave-forge-prerm*.in genmkoctfile.sh.in
sudo -u fink-bld [ENV] sh -c /tmp/fink.fnc8s
echo No compiling required.
No compiling required.
/bin/rm -rf /sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1
/bin/mkdir -p /sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64
/bin/mkdir -p /sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.wLFmP
mkdir -p 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/fink-octave-scripts
cp octave-forge-patch.sh octave-forge-comp*.in octave-forge-*inst*.in 
octave-forge-prerm*.in genmkoctfile.sh.in 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/fink-octave-scripts/
chmod a+x 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/fink-octave-scripts/octave-forge-patch.sh
sudo -u fink-bld [ENV] sh -c /tmp/fink.g_6B5
/usr/bin/install -d -m 700 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/doc/fink-octave-scripts
/bin/cp -r Readme.md 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/doc/fink-octave-scripts/
/bin/chmod -R go=u-w 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/doc/fink-octave-scripts
/bin/rm -f /sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/info/dir 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/info/dir.old 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/info/dir 
/sw64/src/fink.build/root-fink-octave-scripts-0.2.0-1/sw64/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
dpkg-deb -b root-fink-octave-scripts-0.2.0-1 
/sw64/fink/10.6/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `fink-octave-scripts' in 
`/sw64/fink/10.6/stable/main/binary-darwin-x86_64/sci/fink-octave-scripts_0.2.0-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-fink-octave-scripts-0.2.0-1
(Reading database ... 530832 files and directories currently installed.)
Removing fink-buildlock-fink-octave-scripts-0.2.0-1 ...
Reading buildlock packages...
/sw64/bin/dpkg-lockwait -i 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/sci/fink-octave-scripts_0.2.0-1_darwin-x86_64.deb
(Reading database ... 530831 files and directories currently installed.)
Preparing to replace fink-octave-scripts 0.2.0-1 (using 
.../fink-octave-scripts_0.2.0-1_darwin-x86_64.deb) ...
Unpacking replacement fink-octave-scripts ...
Setting up fink-octave-scripts (0.2.0-1) ...

Dominique

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Re: [Fink-users] Failed: phase compiling: tsa-oct364-4.2.4-7 failed

2013-04-28 Thread Dominique Dhumieres
 What does dpkg -L fink-octave-scripts return now?

/.
/sw64
/sw64/share
/sw64/share/doc
/sw64/share/doc/fink-octave-scripts
/sw64/share/doc/fink-octave-scripts/Readme.md
/sw64/share/fink-octave-scripts
/sw64/share/fink-octave-scripts/genmkoctfile.sh.in
/sw64/share/fink-octave-scripts/octave-forge-comp-3.0.5.in
/sw64/share/fink-octave-scripts/octave-forge-comp-3.4.3.in
/sw64/share/fink-octave-scripts/octave-forge-compile-3.0.5.sh.in
/sw64/share/fink-octave-scripts/octave-forge-compile-3.4.3.sh.in
/sw64/share/fink-octave-scripts/octave-forge-inst.in
/sw64/share/fink-octave-scripts/octave-forge-install.sh.in
/sw64/share/fink-octave-scripts/octave-forge-patch.sh
/sw64/share/fink-octave-scripts/octave-forge-postinst.in
/sw64/share/fink-octave-scripts/octave-forge-postinst.sh.in
/sw64/share/fink-octave-scripts/octave-forge-prerm.in
/sw64/share/fink-octave-scripts/octave-forge-prerm.sh.in

and tsa-oct364 has been updated.

Thanks for the help.

Dominique

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[Fink-users] Failed: phase installing: qrupdate-atlas-1.1.2-7 failed

2013-04-18 Thread Dominique Dhumieres
Alex,

Installing qrupdate-atlas-1.1.2-7 failed on

Package manager version: 0.34.7
Distribution version: selfupdate-rsync Thu Apr 18 12:35:52 2013, 10.6, x86_64
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
Max. Fink build jobs:  2

with

#!/bin/sh -ev
install -d 
/sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7/sw64/lib/qrupdate-atlas
make install-shlib install-staticlib 
DESTDIR=/sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7   
make -C src/ install-shlib
install -m644 ../libqrupdate.dylib 
/sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7/sw64/lib/qrupdate-atlas/libqrupdate.1.1.dylib
ln -s libqrupdate.1.1.dylib 
/sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7/sw64/lib/qrupdate-atlas/libqrupdate.1.dylib
ln -s libqrupdate.1.1.dylib 
/sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7/sw64/lib/qrupdate-atlas/libqrupdate.dylib
make -C src/ install-staticlib
install -m644 ../libqrupdate.a 
/sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7/sw64/lib/qrupdate-atlas/libqrupdate.a
cd /sw64/src/fink.build/root-qrupdate-atlas-1.1.2-7/sw64/lib
# move static lib up
mv qrupdate-atlas/libqrupdate-atlas.a .
mv: rename qrupdate-atlas/libqrupdate-atlas.a to ./libqrupdate-atlas.a: No such 
file or directory
### execution of /tmp/fink.T_BJD failed, exit code 1
### execution of /tmp/fink.AyP8_ failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-qrupdate-atlas-1.1.2-7
(Reading database ... 530080 files and directories currently installed.)
Removing fink-buildlock-qrupdate-atlas-1.1.2-7 ...
Failed: phase installing: qrupdate-atlas-1.1.2-7 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: atlas-3.10.1-1 failed

2013-04-15 Thread Dominique Dhumieres
Can you post INSTALL_LOG/sMVNTUNE.LOG?

I add it at the end of this mail. Apparently the relevant error is

/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/bin/ATLrun.sh: line 4: 63889 
Segmentation fault  $atldir/$*

 I suspect this will reveal that passing -mcpu=7400 -mtune=7400 on mflags
 solves the build problem.

Does this apply also for G5?

Dominique

***
***
***
*   BEGAN ATLAS3.10.1 INSTALL OF SECTION 2-2-7 ON 04/10/2013 AT 23:16 *
***
***
***



make[2]: Entering directory `/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/bin'
cd /sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/blas/gemv ; make 
res/sMVNK.sum pre=s
make[3]: Entering directory 
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/blas/gemv'
./xmvnksearch -p s

  Read in L1 Cache size as = 32KB.

ERROR 512, LINE 318 OF 
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include/atlas_mvtesttime.h
SYSTEM CALL FAILED: make smvnktime M=870 N=8 lda=875 mvnrout=smvn_C.c 
iflag=24843 MVNKdir=EXTDIR sMVFLAGS=-force_cpusubtype_ALL -fPIC 
-fomit-frame-pointer -O3 -maltivec -mabi=altivec -force_cpusubtype_ALL -m32 
-fPIC align=-Fa 4 -Fa -8 -Fx 4 -Fx -8 -Fy 4 -Fy -8 flushKB=0 tflags=-f 
res/smv90N_870x8_875-0_32x8_0_a0x0x0_24843 -# 8 -F 3902 mu=32 nu=8  
/var/tmp/tmp.1.FL1FjM 21


OUTPUT OF system():
make[4]: Entering directory 
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/blas/gemv'
rm -f ATL_smvnk.c ATL_sgemvN.o xsmvnktime
cp -f EXTDIR/smvn_C.c ATL_smvnk.c
/sw/src/fink.build/atlas-3.10.1-1/gcc -c -DL2SIZE=4194304 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/include 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include/contrib -DAdd_ 
-DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_PPCG4 
-DATL_CPUMHZ=1800 -DATL_GAS_PPC -m32 -DATL_DYLIBS -DATL_FULL_LAPACK 
-force_cpusubtype_ALL -fPIC -fomit-frame-pointer -O3 -maltivec -mabi=altivec 
-force_cpusubtype_ALL -m32 -fPIC 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/blas/gemv -o ATL_smvnk.o \
   -DSREAL ATL_smvnk.c
/sw/src/fink.build/atlas-3.10.1-1/gcc -DL2SIZE=4194304 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/include 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include 
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include/contrib -DAdd_ 
-DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_PPCG4 
-DATL_CPUMHZ=1800 -DATL_GAS_PPC -m32 -DATL_DYLIBS -DATL_FULL_LAPACK -fPIC 
-fomit-frame-pointer -O3 -maltivec -mabi=altivec -force_cpusubtype_ALL -m32 
-fPIC -o xsmvnktime smvktimeN.o \
   ATL_smvnk.o \
   
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libtstatlas.a 
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libatlas.a
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/bin/ATLrun.sh 
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/blas/gemv xsmvnktime -m 870 
-n 8 -l 875 \
  -C 0 -Fa 4 -Fa -8 -Fx 4 -Fx -8 -Fy 4 -Fy -8 -f 
res/smv90N_870x8_875-0_32x8_0_a0x0x0_24843 -# 8 -F 3902
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/bin/ATLrun.sh: line 4: 63889 
Segmentation fault  $atldir/$*
make[4]: *** [smvnktime] Error 139
make[4]: Leaving directory 
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/blas/gemv'

Cases read in:
ID=1 ROUT='ATL_gemvN_axpy.c' AUTH='R. Clint Whaley' TA='N' \
   rankR=0 CacheElts=0 SSE=0 alignA=0 alignY=0 alignX=0 minM=0 minN=0 NU=16  \
   MU=1 LDAMUL=0 PFTUNABLE=0 ALIGNX2A=0 ADDCFLAGS=0 GEMMBASED=0 AXPYBASED=1  \
   ALLALIGNXY=0 LDYTOP=0 FNU=0 X87=0 
ID=2 ROUT='ATL_sgemvN_8x4_sse.c' AUTH='R. Clint Whaley' TA='N' \
   rankR=0 CacheElts=0 SSE=1 alignA=0 alignY=16 alignX=0 minM=0 minN=0  \
   NU=4 MU=8 LDAMUL=16 PFTUNABLE=0 ALIGNX2A=1 ADDCFLAGS=0 GEMMBASED=0 
AXPYBASED=1  \
   ALLALIGNXY=0 LDYTOP=0 FNU=0 X87=0 
ID=3 ROUT='ATL_gemvN_v6x8_vsx.c' AUTH='IBM' TA='N' \
   rankR=0 CacheElts=0 SSE=0 alignA=0 alignY=0 alignX=0 minM=0 minN=0 NU=8  \
   MU=24 LDAMUL=0 PFTUNABLE=0 ALIGNX2A=0 ADDCFLAGS=0 GEMMBASED=0 AXPYBASED=1  \
   ALLALIGNXY=0 LDYTOP=0 FNU=0 X87=0   CFLAGS='-O3 -mvsx'  COMP='gcc'

BEGIN BASIC KERNEL TESTS:
   Kernel ATL_gemvN_axpy.c(1) passes basic test
   NUKING bad kernel ATL_gemvN_v6x8_vsx.c(3), MU=24, NU=8
DONE BASIC KERNEL TESTS:


Surviving cases:
ID=1 ROUT='ATL_gemvN_axpy.c' AUTH='R. Clint Whaley' TA='N' \
   rankR=0 CacheElts=0 SSE=0 alignA=0 alignY=0 alignX=0 minM=0 minN=0 NU=16  \
   MU=1 LDAMUL=0 PFTUNABLE=0 ALIGNX2A=0 ADDCFLAGS=0 GEMMBASED=0 AXPYBASED=1  \
   ALLALIGNXY=0 LDYTOP=0 FNU=0 X87=0 

[Fink-users] Failed: phase compiling: atlas-3.10.1-1 failed

2013-04-10 Thread Dominique Dhumieres
Updating to atlas-3.10.1-1 failed on

Package manager version: 0.34.7
Distribution version: selfupdate-rsync Tue Apr  9 23:13:12 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
atlas-3.10.1-1 is set to build with only one job.

with

   BEGIN STAGE 2-2-5: GEMV TUNE at 03:53
make -f Makefile INSTALL_LOG/sMVNK.sum pre=s 21 | ./xatlas_tee 
INSTALL_LOG/sMVNTUNE.LOG
make[1]: Leaving directory `/sw/src/fink.build/atlas-3.10.1-1/darwin_bld'
### execution of /tmp/fink.xL5c7 failed, exit code 2
### execution of /tmp/fink.wCntN failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-atlas-3.10.1-1
(Reading database ... 575762 files and directories currently installed.)
Removing fink-buildlock-atlas-3.10.1-1 ...
Failed: phase compiling: atlas-3.10.1-1 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: atlas-3.10.1-1 failed

2013-04-10 Thread Dominique Dhumieres
Jack,
You can get the complete log at
http://www.lps.ens.fr/~dominiq/fink/atlas.log.bz2

Dominique

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[Fink-users] Failed: phase compiling: matplotlib-py25-1.2.1-1 failed

2013-04-03 Thread Dominique Dhumieres
Updating (installing) matplotlib-py25-1.2.1-1 failed on

Package manager version: 0.34.7
Distribution version: selfupdate-rsync Wed Apr  3 13:49:38 2013, 10.6, x86_64
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
Max. Fink build jobs:  2

or

Package manager version: 0.34.7
Distribution version: selfupdate-rsync Wed Apr  3 13:32:13 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

with

...
udo -u fink-bld [ENV] sh -c /tmp/fink.1MGrp
env LANG=C LC_ALL=C /sw64/bin/tar  --no-same-owner --no-same-permissions -xf 
/sw64/src/matplotlib-1.2.1.tar.gz
sudo -u fink-bld [ENV] sh -c /tmp/fink.YcrPq
[ -r /sw64/fink/dists/stable/main/finkinfo/sci/matplotlib-py.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.0SKKV
sed 's|@PREFIX@|/sw64|g'  
/sw64/fink/dists/stable/main/finkinfo/sci/matplotlib-py.patch | patch -p1
patching file setup.cfg.template
patching file setup.py
patching file setupext.py
sudo -u fink-bld [ENV] sh -c /tmp/fink.urjhB
/tmp/fink.9hnoB
#!/bin/sh -ev
 export PATH=/sw64/lib/freetype219:$PATH
 export 
PKG_CONFIG_PATH=/sw64/lib/pango-ft219/lib/pkgconfig:/sw64/lib/fontconfig2/lib/pkgconfig:/sw64/lib/freetype219/lib/pkgconfig:$PKG_CONFIG_PATH
 /sw64/bin/python2.5 setup.py build
  File setup.py, line 310
(float(i) / len(filtered) * 100.0), end='\r')
   ^
SyntaxError: invalid syntax
### execution of /tmp/fink.9hnoB failed, exit code 1
### execution of /tmp/fink.urjhB failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-matplotlib-py25-1.2.1-1
(Reading database ... 571875 files and directories currently installed.)
Removing fink-buildlock-matplotlib-py25-1.2.1-1 ...
Failed: phase compiling: matplotlib-py25-1.2.1-1 failed

Note that I installed matplotlib-py27_1.2.1-1 without any problem on intel 10.6.

TIA

Dominique

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[Fink-users] Failed: can't install package gcc48-4.8.0-1000

2013-03-25 Thread Dominique Dhumieres
Installing package gcc48-4.8.0-1000 on intel x86_64 OSX 10.6 fails with

Unpacking gcc48 (from .../gcc48_4.8.0-1000_darwin-x86_64.deb) ...
/sw64/bin/dpkg: error processing 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc48_4.8.0-1000_darwin-x86_64.deb
 (--install):
 trying to overwrite `/sw64/share/info/libffi.info', which is also in package 
libffi
Errors were encountered while processing:
 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc48_4.8.0-1000_darwin-x86_64.deb
### execution of /sw64/bin/dpkg-lockwait failed, exit code 1
Failed: can't install package gcc48-4.8.0-1000

TIA

Dominique

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Re: [Fink-users] Failed: can't install package gcc48-4.8.0-1000

2013-03-25 Thread Dominique Dhumieres
Jack,

Thanks for the investigation. Meanwhile a possible workaround is
to remove the libffi package (while keeping libffi-shlibs).

Dominique

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[Fink-users] Failed: PatchFile /sw64/fink/dists/stable/main/finkinfo/sci/gmsh.patch checksum does not match!

2013-03-12 Thread Dominique Dhumieres
On intel 10.6, updating to gmsh-2.7.0-1 fails with

Failed: PatchFile /sw64/fink/dists/stable/main/finkinfo/sci/gmsh.patch 
checksum does not match!
Actual: fa117d7ee3adb9f218ce08cb3f547819
Expected: 39252d46b5c109feb22567af1f2e3cea

TIA

Dominique

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[Fink-users] octave glitches

2013-02-24 Thread Dominique Dhumieres
Updating bundle-octave360-atlas fails with:

Can't resolve dependency octave360-docs for package
bundle-octave360-atlas-20130219-2 (no matching packages/versions found)
Exiting with failure.

Updating bundle-octave-atlas (3.6.4) fails with

Can't resolve dependency actuarial-oct364 for package
bundle-octave364-atlas-20130219-2 (no matching packages/versions found)
Exiting with failure.

TIA

Dominique

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Re: [Fink-users] Failed: PatchFile /sw/fink/dists/stable/main/finkinfo/10.4-EOL/libs/libaprutil.0-shlibs.patch checksum does not match!

2013-01-31 Thread Dominique Dhumieres
 Ack, committed just now.

Confirmed, thanks,

Dominique

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Re: [Fink-users] Failed: phase compiling: libavcodec53-shlibs-0.8.12-2 failed

2013-01-30 Thread Dominique Dhumieres
 Ok, thus updated.  Thanks.

I have rebuilt libavcodec53 with gcc-4.0 without any problem.
Thanks,

Dominique

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[Fink-users] Failed: PatchFile /sw/fink/dists/stable/main/finkinfo/10.4-EOL/libs/libaprutil.0-shlibs.patch checksum does not match!

2013-01-30 Thread Dominique Dhumieres
David,

Updating to libaprutil.0-shlibs-1.5.1-1 on ppc-darwin8 failed with

bzip2 -dc /sw/src/apr-util-1.5.1.tar.bz2 | /sw/bin/tar -xf -  --no-same-owner 
--no-same-permissions 
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-libaprutil.0-shlibs-1.5.1-1
Workaround Bonjour: Unknown error: 0
(Reading database ... 413687 files and directories currently installed.)
Removing fink-buildlock-libaprutil.0-shlibs-1.5.1-1 ...
Failed: PatchFile 
/sw/fink/dists/stable/main/finkinfo/10.4-EOL/libs/libaprutil.0-shlibs.patch 
checksum does not match!
Actual: 6f63a00b02f0274c27e8753a3044e342
Expected: eb4274f2998a4146164237056265fa6e

TIA

Dominique

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Re: [Fink-users] Failed: PatchFile /sw/fink/dists/stable/main/finkinfo/10.4-EOL/sci/gnuplot.patch checksum does not match!

2013-01-27 Thread Dominique Dhumieres
 Fixed

Confirmed, Thanks,

Dominique

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Re: [Fink-users] Can't resolve dependency x11-xlocale-fix for package vim-7.3.709-1

2013-01-27 Thread Dominique Dhumieres
 Fixed

I have now updated vim successfully. Thanks,

Dominique

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Re: [Fink-users] Failed: phase compiling: libavcodec53-shlibs-0.8.12-2 failed

2013-01-27 Thread Dominique Dhumieres
 I have no way of testing this on either 10.4 or powerpc.  Only
 suggestion I was able to find online was to remove libtool14 if it is
 installed.  If that doesn't work, I have no idea of what else to try.

Thanks for the answer, but it did not help.
However I knew that I have been hit by this snag
and I finally found the answer at

http://sourceforge.net/mailarchive/forum.php?thread_name=Pine.LNX.4.64.1206211728250.5542%40hal-00.csl.cornell.eduforum_name=fink-users

The following bloc

# Prefer compilation with gcc-4.2 if available
if [ -x /usr/bin/gcc-4.2 ]; then
  ../configure %c --cc=gcc-4.2
else
  ../configure %c
fi

should be deleted from the info file for ppc-darwin8.
As sais in the thread, if I move gcc-4.2 away,
the update proceeds to the end.

Dominique

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[Fink-users] Failed: PatchFile /sw/fink/dists/stable/main/finkinfo/10.4-EOL/sci/gnuplot.patch checksum does not match!

2013-01-24 Thread Dominique Dhumieres
Updating to gnuplot-4.6.1-2 on

Package manager version: 0.30.2
Distribution version: selfupdate-rsync Tue Jan 22 21:51:09 2013, 10.4, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode Version: 2.5-1

failed with

gzip -dc /sw/src/gnuplot-4.6.1.tar.gz | /sw/bin/tar -xf -  --no-same-owner 
--no-same-permissions 
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gnuplot-4.6.1-2
(Reading database ... 413653 files and directories currently installed.)
Removing fink-buildlock-gnuplot-4.6.1-2 ...
Failed: PatchFile 
/sw/fink/dists/stable/main/finkinfo/10.4-EOL/sci/gnuplot.patch checksum does 
not match!
Actual: 617ad1f1471ab01085384a218f0c2675
Expected: 6066b6bae25263e93f4d56db3d3ee28f

TIA

Dominique

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[Fink-users] Can't resolve dependency x11-xlocale-fix for package vim-7.3.709-1

2013-01-24 Thread Dominique Dhumieres
Updating to vim-7.3.709-1 on

Package manager version: 0.30.2
Distribution version: selfupdate-rsync Tue Jan 22 21:51:09 2013, 10.4, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode Version: 2.5-1

failed with

Can't resolve dependency x11-xlocale-fix for package vim-7.3.709-1 (no
matching packages/versions found)
Exiting with failure.

TIA

Dominique

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[Fink-users] Failed: phase compiling: gdl-0.9.3-1 failed

2013-01-18 Thread Dominique Dhumieres
Updating to gdl-0.9.3-1 failed on

Package manager version: 0.34.4
Distribution version: selfupdate-rsync Fri Jan 18 14:34:27 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

(gcc version 4.2.1) with

...
g++ -DHAVE_CONFIG_H -I. -I.. -I/sw/include -I/sw/include -I/sw -I/sw/include 
-I/sw/include -I/sw/opt/netcdf7/include -I/sw/include -I/sw/include 
-I/sw/include/hdf -I/sw/include/hdf5 -I/sw/include -I/sw/include   
-I/usr/X11/include -I/sw/opt/netcdf7/include -I/sw/include  -g -O2 -MT 
gdl-convert2.o -MD -MP -MF .deps/gdl-convert2.Tpo -c -o gdl-convert2.o `test -f 
'convert2.cpp' || echo './'`convert2.cpp
mv -f .deps/gdl-convert2.Tpo .deps/gdl-convert2.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I/sw/include -I/sw/include -I/sw -I/sw/include 
-I/sw/include -I/sw/opt/netcdf7/include -I/sw/include -I/sw/include 
-I/sw/include/hdf -I/sw/include/hdf5 -I/sw/include -I/sw/include   
-I/usr/X11/include -I/sw/opt/netcdf7/include -I/sw/include  -g -O2 -MT 
gdl-datatypes.o -MD -MP -MF .deps/gdl-datatypes.Tpo -c -o gdl-datatypes.o `test 
-f 'datatypes.cpp' || echo './'`datatypes.cpp
getas.cpp:77: error: template-id 'GetAs' for 'typename Data_ 
template-parameter-1-1 ::Ty Data_SpDPtr::GetAs(SizeT)' does not match any 
template declaration
getas.cpp:77: error: invalid function declaration
getas.cpp:86: error: template-id 'GetAs' for 'typename Data_ 
template-parameter-1-1 ::Ty Data_SpDObj::GetAs(SizeT)' does not match any 
template declaration
getas.cpp:86: error: invalid function declaration
datatypes.cpp: In member function 'int Data_ template-parameter-1-1 
::Scalar2index(SizeT) const [with Sp = SpDByte]':
datatypes.cpp:5419:   instantiated from here
datatypes.cpp:2067: warning: comparison is always false due to limited range of 
data type
datatypes.cpp: In member function 'int Data_ template-parameter-1-1 
::Scalar2index(SizeT) const [with Sp = SpDUInt]':
datatypes.cpp:5421:   instantiated from here
datatypes.cpp:2067: warning: comparison is always false due to limited range of 
data type
basic_op.cpp: In function 'T pow(T, T) [with T = unsigned char]':
basic_op.cpp:4549:   instantiated from 'Data_Sp2* Data_ 
template-parameter-1-1 ::Pow(BaseGDL*) [with Sp = SpDByte]'
datatypes.cpp:5419:   instantiated from here
basic_op.cpp:4514: warning: comparison is always false due to limited range of 
data type
basic_op.cpp: In function 'T pow(T, T) [with T = short unsigned int]':
basic_op.cpp:4549:   instantiated from 'Data_Sp2* Data_ 
template-parameter-1-1 ::Pow(BaseGDL*) [with Sp = SpDUInt]'
datatypes.cpp:5421:   instantiated from here
basic_op.cpp:4514: warning: comparison is always false due to limited range of 
data type
make[3]: *** [gdl-datatypes.o] Error 1
make[3]: Leaving directory `/sw/src/fink.build/gdl-0.9.3-1/gdl-0.9.3/src'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/sw/src/fink.build/gdl-0.9.3-1/gdl-0.9.3/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/sw/src/fink.build/gdl-0.9.3-1/gdl-0.9.3'
make: *** [all] Error 2
### execution of make failed, exit code 2
### execution of /tmp/fink.GqMHw failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gdl-0.9.3-1
(Reading database ... 560088 files and directories currently installed.)
Removing fink-buildlock-gdl-0.9.3-1 ...
Failed: phase compiling: gdl-0.9.3-1 failed

TIA

Dominique

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[Fink-users] Failed: phase compiling: svn-swig-pm588-1.7.8-1 failed

2013-01-09 Thread Dominique Dhumieres
Updating to svn-swig-pm588-1.7.8-1 on

Package manager version: 0.34.4
Distribution version: selfupdate-rsync Sat Jan  5 15:38:09 2013, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

failed with

...
  Running Makefile.PL 
 
 pushd subversion/bindings/swig/perl/native
 ARCHFLAGS= /usr/bin/perl5.8.8 Makefile.PL PERL=/usr/bin/perl5.8.8 
PREFIX=/sw INSTALLPRIVLIB=/sw/lib/perl5/5.8.8 
INSTALLARCHLIB=/sw/lib/perl5/5.8.8/darwin-thread-multi-2level 
INSTALLSITELIB=/sw/lib/perl5/5.8.8 
INSTALLSITEARCH=/sw/lib/perl5/5.8.8/darwin-thread-multi-2level 
INSTALLMAN1DIR=/sw/share/man/man1 INSTALLMAN3DIR=/sw/share/man/man3 
INSTALLSITEMAN1DIR=/sw/share/man/man1 INSTALLSITEMAN3DIR=/sw/share/man/man3 
INSTALLBIN=/sw/bin INSTALLSITEBIN=/sw/bin INSTALLSCRIPT=/sw/bin
/sw/src/fink.build/svn-swig-pm588-1.7.8-1/subversion-1.7.8/subversion/bindings/swig/perl/native
 /sw/src/fink.build/svn-swig-pm588-1.7.8-1/subversion-1.7.8
Writing Makefile for SVN::_Core
Writing MYMETA.yml and MYMETA.json
Writing Makefile.client for SVN::_Client
Writing MYMETA.yml and MYMETA.json
Writing Makefile.delta for SVN::_Delta
Writing MYMETA.yml and MYMETA.json
Writing Makefile.fs for SVN::_Fs
Writing MYMETA.yml and MYMETA.json
Writing Makefile.ra for SVN::_Ra
Writing MYMETA.yml and MYMETA.json
Writing Makefile.repos for SVN::_Repos
Writing MYMETA.yml and MYMETA.json
Writing Makefile.wc for SVN::_Wc
Writing MYMETA.yml and MYMETA.json
make PERL=$PERL FULLPERL=$PERL ABSPERL=$PERL
cp ../../../../../subversion/bindings/swig/perl/native/Delta.pm 
blib/lib/SVN/Delta.pm
cp ../../../../../subversion/bindings/swig/perl/native/Ra.pm blib/lib/SVN/Ra.pm
cp ../../../../../subversion/bindings/swig/perl/native/Wc.pm blib/lib/SVN/Wc.pm
cp ../../../../../subversion/bindings/swig/perl/native/Base.pm 
blib/lib/SVN/Base.pm
cp ../../../../../subversion/bindings/swig/perl/native/Core.pm 
blib/lib/SVN/Core.pm
cp ../../../../../subversion/bindings/swig/perl/native/Repos.pm 
blib/lib/SVN/Repos.pm
cp ../../../../../subversion/bindings/swig/perl/native/Fs.pm blib/lib/SVN/Fs.pm
cp ../../../../../subversion/bindings/swig/perl/native/Client.pm 
blib/lib/SVN/Client.pm
cc -c  -I/sw/include/apache2   -I/sw/include/apache2 -I/sw/include  
-I../../../../../subversion/bindings/swig/perl/libsvn_swig_perl  
-I../../../../../subversion/include  -I../../../../../subversion  
-I../../../../../subversion/bindings/swig -g -g -O2  -g -O2  
-Werror=implicit-function-declaration -g -pipe -fno-common -DPERL_DARWIN 
-no-cpp-precomp -fno-strict-aliasing -Wdeclaration-after-statement 
-I/usr/local/include -O3   -DVERSION=\\ -DXS_VERSION=\\  
-I/System/Library/Perl/5.8.8/darwin-thread-multi-2level/CORE  -I/sw/include  
-DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp core.c
cc1: error: unrecognized command line option 
-Werror=implicit-function-declaration

This is the same failure I have reported on
2012-10-25 for svn-swig-pm588-1.7.7-1.

TIA and Happy New Year,

Dominique

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Re: [Fink-users] Failed: phase compiling: image-oct360-2.0.0-1 failed

2012-12-04 Thread Dominique Dhumieres
 What does the config.log file say?

I have been unable to find any config.log file in
/sw64/src/fink.build/image-oct360-2.0.0-1.
Where should I find it?

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: image-oct360-2.0.0-1 failed

2012-12-04 Thread Dominique Dhumieres
When oct-cxx --version returns

i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

The configure fails with

...
configure:2126: checking whether the C++ compiler works
configure:2148: g++ -std=c++0x -std=c++0x  conftest.cpp  5
cc1plus: error: unrecognized command line option -std=c++0x
cc1plus: error: unrecognized command line option -std=c++0x
configure:2152: $? = 1
configure:2190: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME 
| #define PACKAGE_TARNAME 
| #define PACKAGE_VERSION 
| #define PACKAGE_STRING 
| #define PACKAGE_BUGREPORT 
| #define PACKAGE_URL 
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|   ;
|   return 0;
| }
configure:2195: error: in `/private/var/tmp/oct-wIIjnK/image/src':
configure:2197: error: C++ compiler cannot create executables
See `config.log' for more details
...

If I use

c++ (GCC) 4.8.0 20121129 (experimental) [trunk revision 193933]
Copyright (C) 2012 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

then running configure in the same directory as above works, i.e.,
no C++ compiler cannot create executables in 
/var/tmp/oct-wIIjnK/image/src/config.log
however I get it when I run fink update.

AFAICT the package is configured in a temporary directory. Is there a way
to keep it after the error?

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: image-oct360-2.0.0-1 failed

2012-12-04 Thread Dominique Dhumieres
 I'll probably have to force it to use gcc47 (until gcc48 is in Fink)

I have not been successful with gcc48;-(what is the way to use gcc47?).

Dominique

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[Fink-users] Failed: phase compiling: image-oct360-2.0.0-1 failed

2012-12-03 Thread Dominique Dhumieres
Updating to image-oct3*-2.0.0-1 on

Package manager version: 0.34.4
Distribution version: selfupdate-rsync Mon Dec  3 20:57:06 2012, 10.6, x86_64
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
image-oct360-2.0.0-1 is set to build with only one job.

failed with

...
executing commands from /sw64/share/octave/site/m/startup/octaverc ... done.
warning: function /sw64/share/octave/3.6.0/packages/statistics-1.1.3/fstat.m 
shadows a core library function
executing commands from /sw64/share/octave/3.6.0/m/startup/octaverc ... done.

ans = /sw64/src/fink.build/image-oct360-2.0.0-1/bld/share/octave/3.6.0/packages
mkdir (/var/tmp/oct-JnpAeQ)
untar (./image-2.0.0.tar, /var/tmp/oct-JnpAeQ)
See `config.log' for more details
the configure script returned the following error: checking whether the C++ 
compiler works... no
error: called from `pkgconfigure_make' in file 
/sw64/share/octave/3.6.0/m/pkg/pkg.m near line 1373, column 9
error: called from:
error:   /sw64/share/octave/3.6.0/m/pkg/pkg.m at line 827, column 5
error:   /sw64/share/octave/3.6.0/m/pkg/pkg.m at line 383, column 9
error:   /sw64/src/fink.build/image-oct360-2.0.0-1/bld/octave-forge-comp at 
line 4, column 1
### execution of /tmp/fink.5AqVc failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-image-oct360-2.0.0-1
(Reading database ... 482794 files and directories currently installed.)
Removing fink-buildlock-image-oct360-2.0.0-1 ...
Failed: phase compiling: image-oct360-2.0.0-1 failed
...

gcc version 4.2.1 (Apple Inc. build 5666) (dot 3)

TIA

Dominique

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[Fink-users] Failed: phase compiling: svn-swig-pm588-1.7.7-1 failed

2012-10-25 Thread Dominique Dhumieres
Updating to svn-swig-pm588-1.7.7-1 on

Package manager version: 0.34.4
Distribution version: selfupdate-rsync Thu Oct 25 19:36:03 2012, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
Max. Fink build jobs:  1

failed with

cc -c  -I/sw/include/apache2   -I/sw/include/apache2 -I/sw/include  
-I../../../../../subversion/bindings/swig/perl/libsvn_swig_perl  
-I../../../../../subversion/include  -I../../../../../subversion  
-I../../../../../subversion/bindings/swig -g -g -O2  -g -O2  
-Werror=implicit-function-declaration -g -pipe -fno-common -DPERL_DARWIN 
-no-cpp-precomp -fno-strict-aliasing -Wdeclaration-after-statement 
-I/usr/local/include -O3   -DVERSION=\\ -DXS_VERSION=\\  
-I/System/Library/Perl/5.8.8/darwin-thread-multi-2level/CORE  -I/sw/include  
-DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp core.c
cc1: error: unrecognized command line option 
-Werror=implicit-function-declaration

The build seems to use version 4.0.1 which does not support
-Werror=implicit-function-declaration. So either the
option should be removed or gcc 4.2.1 should be used.

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: svn-swig-pm588-1.7.7-1 failed

2012-10-25 Thread Dominique Dhumieres
I have updated svn-swig-pm588 by setting the default gcc compiler to 4.0.1.
Apparently the configure use the default gcc compiler (4.8.0 in my case),
but the build use gcc 4.0.1.

I saw

configure:19537: $? = 0
configure:19537: result: yes
configure:19594: gcc -c -g -O2  -g -O2  -Werror=implicit-function-declaration 
-I/sw/include  -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp 
conftest.c 5
configure:19594: $? = 0
configure:19929: checking zlib.h usability
configure:19929: gcc -c -g -O2  -g -O2  -Werror=implicit-function-declaration 
-I/sw/include  -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp 
conftest.c 5

in the failing config.log.

Thanks for the answer,

Dominique

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[Fink-users] Failed: phase compiling: octclip-oct305-1.0.3-1 failed

2012-10-25 Thread Dominique Dhumieres
Updating to octclip-oct305-1.0.3-1 (octproj-oct305-1.1.2-1 or
time-oct305-2.0.0-2) on

Package manager version: 0.34.4
Distribution version: selfupdate-rsync Fri Oct 26 01:14:36 2012, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
octclip-oct305-1.0.3-1 is set to build with only one job.

fails with

...
warning: implicit conversion from matrix to string
copyfile 
/sw/src/fink.build/octclip-oct305-1.0.3-1/./octclip/src/_oc_polybool.oct 
/sw/src/fink.build/octclip-oct305-1.0.3-1/./octclip/inst/powerpc-apple-darwin-api-v32
panic: Segmentation fault -- stopping myself...
panic: attempted clean up apparently failed -- aborting...
/sw/share/octave/3.0.5/scripts/octave-forge-compile.sh: line 7: 97587 Abort 
trap  bld/octave-forge-comp
### execution of /tmp/fink.af6Hg failed, exit code 134
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-octclip-oct305-1.0.3-1
(Reading database ... 560902 files and directories currently installed.)
Removing fink-buildlock-octclip-oct305-1.0.3-1 ...
Failed: phase compiling: octclip-oct305-1.0.3-1 failed

Note that I have rebuilt octave305-atlas without success.

TIA

Dominique

PS The obsolete packages could (should?) probably removed from the
bundles.

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Re: [Fink-users] Failed: phase compiling: svn-swig-pm588-1.7.7-1 failed

2012-10-25 Thread Dominique Dhumieres
 How did 'gcc' get to be gcc 4.8.0? Did you create a symlink to it?

I put the bin dir in the PATH after the sw ones, but before the usr ones.

 That's likely to cause a lot of problems.

A few problems, yes (as in this case), but not a lot, probably not more
than having gcc 4.2 as the default (I have to do the switching each time
fink is updated).

Apparently most of the packages set CC and CXX to what they need.

Dominique

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[Fink-users] Failed: phase compiling: optim-atlas-oct324-1.2.1-1 failed

2012-09-18 Thread Dominique Dhumieres
Updating to optim-atlas-oct324-1.2.1-1 on

Package manager version: 0.34.3
Distribution version: selfupdate-rsync Tue Sep 18 18:39:18 2012, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
optim-atlas-oct324-1.2.1-1 is set to build with only one job.

failed with

...
ans = 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/bld/share/octave/3.2.4/packages
mkoctfile: stripping disabled on this platform
mkoctfile: stripping disabled on this platform
mkoctfile: stripping disabled on this platform
mkoctfile: stripping disabled on this platform
mkoctfile: stripping disabled on this platform
make: Entering directory 
`/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/optim-1.2.1/src'
LFLAGS=-L/sw/lib/octave-3.2.4 -L/sw/lib  -lptlapack -lptcblas -lptf77blas 
-latlas mkoctfile -s __bfgsmin.cc
LFLAGS=-L/sw/lib/octave-3.2.4 -L/sw/lib  -lptlapack -lptcblas -lptf77blas 
-latlas mkoctfile -s numgradient.cc
LFLAGS=-L/sw/lib/octave-3.2.4 -L/sw/lib  -lptlapack -lptcblas -lptf77blas 
-latlas mkoctfile -s numhessian.cc
LFLAGS=-L/sw/lib/octave-3.2.4 -L/sw/lib  -lptlapack -lptcblas -lptf77blas 
-latlas mkoctfile -s samin.cc
LFLAGS=-L/sw/lib/octave-3.2.4 -L/sw/lib  -lptlapack -lptcblas -lptf77blas 
-latlas mkoctfile -s __disna_optim__.cc
make: Leaving directory 
`/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/optim-1.2.1/src'
copyfile 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/./optim-1.2.1/src/__bfgsmin.oct 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/./optim-1.2.1/src/__disna_optim__.oct
 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/./optim-1.2.1/src/numgradient.oct 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/./optim-1.2.1/src/numhessian.oct 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/./optim-1.2.1/src/samin.oct 
/sw/src/fink.build/optim-atlas-oct324-1.2.1-1/./optim-1.2.1/inst/powerpc-apple-darwin-api-v37
warning: gen_doc_cache: unusable help text in 'test_d2_min_1'. Ignoring 
function.
warning: gen_doc_cache: unusable help text in 'test_d2_min_2'. Ignoring 
function.
warning: gen_doc_cache: unusable help text in 'test_d2_min_3'. Ignoring 
function.
panic: Segmentation fault -- stopping myself...
/sw/share/octave/3.2.4/scripts/octave-forge-compile.sh: line 7: 77607 
Segmentation fault  bld/octave-forge-comp
### execution of /tmp/fink.Ccgj6 failed, exit code 139
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-optim-atlas-oct324-1.2.1-1
(Reading database ... 561054 files and directories currently installed.)
Removing fink-buildlock-optim-atlas-oct324-1.2.1-1 ...
Failed: phase compiling: optim-atlas-oct324-1.2.1-1 failed

Note that 3.4.3 and 3.6.0 were updated without any glitch.

TIA

Dominique

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[Fink-users] Failed: phase patching: secs1d-oct3??-0.0.9-2 failed

2012-09-06 Thread Dominique Dhumieres
Hi Alex,

Updating to secs1d-oct3??-0.0.9-2 failed with

Unpacking fink-buildlock-secs1d-oct305-0.0.9-2 (from 
.../fink-buildlock-secs1d-oct305-0.0.9-2_2012.09.06-19.52.55_darwin-x86_64.deb) 
...
Setting up fink-buildlock-secs1d-oct305-0.0.9-2 (2012.09.06-19.52.55) ...

/sw64/bin/tar  --no-same-owner --no-same-permissions -xf 
/sw64/src/secs1d-0.0.9.tar.gz
chmod 644 
inst/secs1d_{dd_gummel_map,_nlpoisson_newton,_silicon_material_properties}.m
chmod: inst/secs1d__nlpoisson_newton.m: No such file or directory
chmod: inst/secs1d__silicon_material_properties.m: No such file or directory
### execution of chmod failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-secs1d-oct305-0.0.9-2
(Reading database ... 477681 files and directories currently installed.)
Removing fink-buildlock-secs1d-oct305-0.0.9-2 ...
Failed: phase patching: secs1d-oct305-0.0.9-2 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase patching: secs1d-oct3??-0.0.9-2 failed

2012-09-06 Thread Dominique Dhumieres
 Thanks.  It's fixed now in CVS.

Confirmed, thanks,

Dominique

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Re: [Fink-users] Problems with mechanics-oct*

2012-08-26 Thread Dominique Dhumieres
 Try revision 3.

On x86_64 I now get

Can't resolve dependency linear-algebra-oct360 ( = 2.0.0 ) |
linear-algebra-ref-360 | linear-algebra-atlas-oct360 general-oct360 ( =
1.2.2 ) for package mechanics-oct360-1.3.0-3 (no matching
packages/versions found)
Exiting with failure.

missing parentheses?

Dominique

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[Fink-users] Problems with mechanics-oct*

2012-08-25 Thread Dominique Dhumieres
On ppc 10.5, updating to mechanics-oct343-1.3.0-2 seems to ignore
the atlas variants:

fink needs help picking an alternative to satisfy a virtual dependency. The
candidates:

(1) octave343-dev: MATLAB-like language for computations
(2) octave343-x11-dev: MATLAB-like language for computations

On x86_64 10.6, I get

Can't resolve dependency linear-algebra-oct360 ( = 2.0.0 ) for package
mechanics-oct360-1.3.0-1 (no matching packages/versions found)
Exiting with failure.

again the atlas variants are ignored.

TIA

Dominique


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[Fink-users] Failed: phase compiling: libopensync1-shlibs-0.39-3 failed

2012-08-19 Thread Dominique Dhumieres
Updating to libopensync1-shlibs-0.39-3 failed on

Package manager version: 0.34.2
Distribution version: selfupdate-rsync Sun Aug 19 15:30:12 2012, 10.6, x86_64
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
Max. Fink build jobs:  2

with

...
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/build 
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39
+ for dir in '/sw64/share/swig/*'
+ SWIG_DIR=/sw64/share/swig/2.0.4
+ cmake '-DBUNDLE_INSTALL_DIR:PATH='\''/sw64/bin'\''' 
'-DCMAKE_INSTALL_PREFIX='\''/sw64'\''' -DCMAKE_BUILD_TYPE=RelWithDebInfo 
-DCMAKE_OSX_SYSROOT:PATH=/ -DOPENGL_INCLUDE_DIR:PATH=/usr/X11/include 
-DOPENGL_gl_LIBRARY:FILEPATH=/usr/X11/lib/libGL.dylib 
-DOPENGL_glu_LIBRARY:FILEPATH=/usr/X11/lib/libGLU.dylib 
'-DBoost_ADDITIONAL_VERSIONS=1.41;1.41.0' -DBOOST_ROOT=/sw64 
-DBOOST_INCLUDEDIR=/sw64/include/boost-1_41 -DBOOST_LIBRARYDIR=/sw64/lib 
-DJPEG_INCLUDE_DIR=/sw64/include -DJPEG_LIBRARY=/sw64/lib/libjpeg.dylib 
-DJPEG_LIBRARIES=/sw64/lib/libjpeg.dylib 
-DPYTHON_EXECUTABLE=/sw64/bin/python2.6 -D_KDE_DEFAULT_HOME_POSTFIX=4 
'-DSYSCONF_INSTALL_DIR='\''/sw64/etc'\''' -DSWIG_DIR=/sw64/share/swig/2.0.4 ..
-- The C compiler identification is unknown
-- Check for working C compiler: 
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/gcc-root/gcc-4.2
-- Check for working C compiler: 
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/gcc-root/gcc-4.2
 -- broken
CMake Error at /sw64/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:52 
(MESSAGE):
  The C compiler
  
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/gcc-root/gcc-4.2
  is not able to compile a simple test program.

  It fails with the following output:

   Change Dir: 
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/build/CMakeFiles/CMakeTmp

  

  Run Build Command:/usr/bin/make cmTryCompileExec2727299985/fast

  /usr/bin/make -f CMakeFiles/cmTryCompileExec2727299985.dir/build.make
  CMakeFiles/cmTryCompileExec2727299985.dir/build

  /sw64/bin/cmake -E cmake_progress_report
  
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec2727299985.dir/testCCompiler.c.o

  
  
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/gcc-root/gcc-4.2
  -arch x86_64 -o CMakeFiles/cmTryCompileExec2727299985.dir/testCCompiler.c.o
  -c
  
/sw64/src/fink.build/libopensync1-shlibs-0.39-3/libopensync-0.39/build/CMakeFiles/CMakeTmp/testCCompiler.c


  ccache: failed to create /sw64/var/ccache/tmp (Permission denied)

  make[1]: *** [CMakeFiles/cmTryCompileExec2727299985.dir/testCCompiler.c.o]
  Error 1

  make: *** [cmTryCompileExec2727299985/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:1 (PROJECT)


-- Configuring incomplete, errors occurred!
### execution of /tmp/fink.lDC5_ failed, exit code 1
### execution of /tmp/fink.TZR2I failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-libopensync1-shlibs-0.39-3
(Reading database ... 472171 files and directories currently installed.)
Removing fink-buildlock-libopensync1-shlibs-0.39-3 ...
Failed: phase compiling: libopensync1-shlibs-0.39-3 failed

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: libopensync1-shlibs-0.39-3 failed

2012-08-19 Thread Dominique Dhumieres
 Try running sudo chown -R fink-bld /sw/var/ccache and then see if the
 opensync build works.

It worked (BTW it was sudo chown -R fink-bld /sw64/var/ccache for me;-)

Thanks for the quick fix.

Dominique

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Re: [Fink-users] Failed: phase compiling: imlib-1.9.15-1027 failed

2012-07-31 Thread Dominique Dhumieres
 I'd recommend renaming /usr/X11/bin/xmkmf to get cleaner X11 setup,
 since any Fink packages that need xmkmf use fink's xmkmf package.

It worked, thanks for the tip.

Dominique

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[Fink-users] Failed: phase compiling: fits-oct360-1.0.2-1 failed

2012-07-31 Thread Dominique Dhumieres

Updating to fits-oct360-1.0.2-1 failed on

Package manager version: 0.34.1
Distribution version: selfupdate-rsync Tue Jul 31 21:36:08 2012, 10.5, powerpc
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.4
Xcode command-line tools: 3.1.4
fits-oct360-1.0.2-1 is set to build with only one job.

with

...
ans = /sw/src/fink.build/fits-oct360-1.0.2-1/bld/share/octave/3.6.0/packages
mkdir (/var/tmp/oct-yrpnU0)
untar (./fits.tar, /var/tmp/oct-yrpnU0)
read_fits_image.cc: In function 'octave_value_list Fread_fits_image(const 
octave_value_list, int)':
read_fits_image.cc:83: error: 'class std::vectorlong int, std::allocatorlong 
int ' has no member named 'data'
read_fits_image.cc:143: error: 'class std::vectorlong int, std::allocatorlong 
int ' has no member named 'data'
make: *** [read_fits_image.oct] Error 1
'make' returned the following error: make: Entering directory 
`/private/var/tmp/oct-yrpnU0/fits-1.0.2/src'
mkoctfile --verbose -Wall -L/sw/lib -lcfitsio read_fits_image.cc
oct-cxx -c -I/sw/include -I/sw/include/octave-3.6.0/octave/.. 
-I/sw/include/octave-3.6.0/octave -I/sw/include -I/sw/include 
-I/sw/include/freetype2 -I/sw/include -I/sw/include -O0 -Wall 
read_fits_image.cc -o read_fits_image.o
make: Leaving directory `/private/var/tmp/oct-yrpnU0/fits-1.0.2/src'
error: called from `pkgconfigure_make' in file 
/sw/share/octave/3.6.0/m/pkg/pkg.m near line 1385, column 9
error: called from:
error:   /sw/share/octave/3.6.0/m/pkg/pkg.m at line 827, column 5
error:   /sw/share/octave/3.6.0/m/pkg/pkg.m at line 383, column 9
error:   /sw/src/fink.build/fits-oct360-1.0.2-1/bld/octave-forge-comp at line 
4, column 1
### execution of /tmp/fink.U4pf8 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-fits-oct360-1.0.2-1
(Reading database ... 558751 files and directories currently installed.)
Removing fink-buildlock-fits-oct360-1.0.2-1 ...
Failed: phase compiling: fits-oct360-1.0.2-1 failed

TIA

Dominique

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[Fink-users] Can't resolve dependency liboctave343-gcc47-dev for package fits-oct343-1.0.2-1

2012-07-31 Thread Dominique Dhumieres
Updating to fits-oct343-1.0.2-1 on both ppc 10.5 and intel 10.6 failed with

Can't resolve dependency liboctave343-gcc47-dev for package
fits-oct343-1.0.2-1 (no matching packages/versions found)
Exiting with failure.

TIA

Dominique

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