Re: [Fink-users] Error installing atlas

2017-02-24 Thread Sylvain Barbot 
Hi Alexander,

I get

> sysctl hw.model
hw.model: MacBookPro9,2

Thanks,
Sylvain

On Sat, Feb 25, 2017 at 1:24 AM, Alexander Hansen
 wrote:
>
>> On Feb 23, 2017, at 21:13, Sylvain Barbot  wrote:
>>
>> Dear All,
>>
>> I get errors while compiling and installing the atlas library.
>>
>> fink install atlas
>>
>> cp -f GEN/* /sw/src/fink.build/atlas-3.10.2-3/darwin_bld/src/blas/level1/.
>> /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make_zaxpy lib
>> /sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -DL2SIZE=4194304
>> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/include
>> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include
>> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include/contrib
>> -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
>> -DATL_ARCH_Corei2 -DATL_CPUMHZ=2900 -DATL_AVX -DATL_SSE3 -DATL_SSE2
>> -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
>> -DATL_FULL_LAPACK -DATL_NCPU=4 -fPIC -fomit-frame-pointer -O3 -m64
>> -mfpmath=sse -m64 -fPIC -DDCPLX -o ATL_zaxpy.o -c ATL_zaxpy.c
>> gcc-fsf-5 -fPIC -fomit-frame-pointer -O3 -m64 -mfpmath=sse -m64 -fPIC
>> -x assembler-with-cpp -DL2SIZE=4194304
>> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/include
>> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include
>> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include/contrib
>> -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
>> -DATL_ARCH_Corei2 -DATL_CPUMHZ=2900 -DATL_AVX -DATL_SSE3 -DATL_SSE2
>> -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
>> -DATL_FULL_LAPACK -DATL_NCPU=4 -DDCPLX -o ATL_zaxpy_xp1yp1aXbX.o -c
>> ATL_zaxpy_xp1yp1aXbX.c
>> ATL_zaxpy_xp1yp1aXbX.c:112:no such instruction: `vbroadcastsd 8(%rsi), %ymm1'
>> ATL_zaxpy_xp1yp1aXbX.c:113:no such instruction: `vbroadcastsd -8(%rsp), 
>> %ymm0'
>> ATL_zaxpy_xp1yp1aXbX.c:114:no such instruction: `vblendpd $0x5,
>> %ymm0,%ymm1,%ymm1'
>> ATL_zaxpy_xp1yp1aXbX.c:115:no such instruction: `vbroadcastsd (%rsi), %ymm0'
>> ATL_zaxpy_xp1yp1aXbX.c:151:no such instruction: `vmovapd (%rdx,%rax), %ymm3'
>> ATL_zaxpy_xp1yp1aXbX.c:152:no such instruction: `vshufpd $0x5,
>> %ymm3,%ymm3,%ymm4'
>> ATL_zaxpy_xp1yp1aXbX.c:153:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
>> ATL_zaxpy_xp1yp1aXbX.c:154:no such instruction: `vaddpd (%rcx,%rax),
>> %ymm3,%ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:156:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
>> ATL_zaxpy_xp1yp1aXbX.c:157:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:159:no such instruction: `vmovapd %ymm2, (%rcx,%rax)'
>> ATL_zaxpy_xp1yp1aXbX.c:174:no such instruction: `vmovupd (%rdx,%rax), %ymm3'
>> ATL_zaxpy_xp1yp1aXbX.c:175:no such instruction: `vshufpd $0x5,
>> %ymm3,%ymm3,%ymm4'
>> ATL_zaxpy_xp1yp1aXbX.c:176:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
>> ATL_zaxpy_xp1yp1aXbX.c:177:no such instruction: `vaddpd (%rcx,%rax),
>> %ymm3,%ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:179:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
>> ATL_zaxpy_xp1yp1aXbX.c:180:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:182:no such instruction: `vmovapd %ymm2, (%rcx,%rax)'
>> ATL_zaxpy_xp1yp1aXbX.c:199:no such instruction: `vmovupd (%rdx,%rax), %ymm3'
>> ATL_zaxpy_xp1yp1aXbX.c:200:no such instruction: `vshufpd $0x5,
>> %ymm3,%ymm3,%ymm4'
>> ATL_zaxpy_xp1yp1aXbX.c:201:no such instruction: `vmovupd (%rcx,%rax), %ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:202:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
>> ATL_zaxpy_xp1yp1aXbX.c:203:no such instruction: `vaddpd %ymm3, %ymm2,%ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:205:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
>> ATL_zaxpy_xp1yp1aXbX.c:206:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
>> ATL_zaxpy_xp1yp1aXbX.c:208:no such instruction: `vmovupd %ymm2, (%rcx,%rax)'
>> make[6]: *** [ATL_zaxpy_xp1yp1aXbX.o] Error 1
>> make[5]: *** [zgen] Error 2
>> make[4]: *** [zlib] Error 2
>> make[3]: *** [lib.grd] Error 2
>> make[2]: *** [IStage1] Error 2
>> ERROR 703 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR 
>> DETAILS.
>> cd /sw/src/fink.build/atlas-3.10.2-3/darwin_bld ;
>> /Applications/Xcode.app/Contents/Developer/usr/bin/make error_report
>> /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top 
>> error_report
>> uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
>> /sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -v 2>&1  >>
>> bin/INSTALL_LOG/ERROR.LOG
>> Using built-in specs.
>> COLLECT_GCC=/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc
>> COLLECT_LTO_WRAPPER=/sw/lib/gcc5/libexec/gcc/x86_64-apple-darwin13.4.0/5.4.0/lto-wrapper
>> Target: x86_64-apple-darwin13.4.0
>> Configured with: ../gcc-5.4.0/configure --prefix=/sw
>> --prefix=/sw/lib/gcc5 --mandir=/sw/share/man
>> --infodir=/sw/lib/gcc5/info
>> --enable-languages=c,c++,fortran,lto,objc,obj-c++,java --with-gmp=/sw
>> --with-libiconv-prefix=/sw --with-isl=/sw --with-mpc=/sw
>> --with-system-zlib --program-suffix=-fsf-5
>>

Re: [Fink-users] Error installing atlas

2017-02-24 Thread Alexander Hansen 

> On Feb 23, 2017, at 21:13, Sylvain Barbot  wrote:
> 
> Dear All,
> 
> I get errors while compiling and installing the atlas library.
> 
> fink install atlas
> 
> cp -f GEN/* /sw/src/fink.build/atlas-3.10.2-3/darwin_bld/src/blas/level1/.
> /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make_zaxpy lib
> /sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -DL2SIZE=4194304
> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/include
> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include
> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include/contrib
> -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
> -DATL_ARCH_Corei2 -DATL_CPUMHZ=2900 -DATL_AVX -DATL_SSE3 -DATL_SSE2
> -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
> -DATL_FULL_LAPACK -DATL_NCPU=4 -fPIC -fomit-frame-pointer -O3 -m64
> -mfpmath=sse -m64 -fPIC -DDCPLX -o ATL_zaxpy.o -c ATL_zaxpy.c
> gcc-fsf-5 -fPIC -fomit-frame-pointer -O3 -m64 -mfpmath=sse -m64 -fPIC
> -x assembler-with-cpp -DL2SIZE=4194304
> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/include
> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include
> -I/sw/src/fink.build/atlas-3.10.2-3/darwin_bld/../ATLAS//include/contrib
> -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
> -DATL_ARCH_Corei2 -DATL_CPUMHZ=2900 -DATL_AVX -DATL_SSE3 -DATL_SSE2
> -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
> -DATL_FULL_LAPACK -DATL_NCPU=4 -DDCPLX -o ATL_zaxpy_xp1yp1aXbX.o -c
> ATL_zaxpy_xp1yp1aXbX.c
> ATL_zaxpy_xp1yp1aXbX.c:112:no such instruction: `vbroadcastsd 8(%rsi), %ymm1'
> ATL_zaxpy_xp1yp1aXbX.c:113:no such instruction: `vbroadcastsd -8(%rsp), %ymm0'
> ATL_zaxpy_xp1yp1aXbX.c:114:no such instruction: `vblendpd $0x5,
> %ymm0,%ymm1,%ymm1'
> ATL_zaxpy_xp1yp1aXbX.c:115:no such instruction: `vbroadcastsd (%rsi), %ymm0'
> ATL_zaxpy_xp1yp1aXbX.c:151:no such instruction: `vmovapd (%rdx,%rax), %ymm3'
> ATL_zaxpy_xp1yp1aXbX.c:152:no such instruction: `vshufpd $0x5,
> %ymm3,%ymm3,%ymm4'
> ATL_zaxpy_xp1yp1aXbX.c:153:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
> ATL_zaxpy_xp1yp1aXbX.c:154:no such instruction: `vaddpd (%rcx,%rax),
> %ymm3,%ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:156:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
> ATL_zaxpy_xp1yp1aXbX.c:157:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:159:no such instruction: `vmovapd %ymm2, (%rcx,%rax)'
> ATL_zaxpy_xp1yp1aXbX.c:174:no such instruction: `vmovupd (%rdx,%rax), %ymm3'
> ATL_zaxpy_xp1yp1aXbX.c:175:no such instruction: `vshufpd $0x5,
> %ymm3,%ymm3,%ymm4'
> ATL_zaxpy_xp1yp1aXbX.c:176:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
> ATL_zaxpy_xp1yp1aXbX.c:177:no such instruction: `vaddpd (%rcx,%rax),
> %ymm3,%ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:179:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
> ATL_zaxpy_xp1yp1aXbX.c:180:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:182:no such instruction: `vmovapd %ymm2, (%rcx,%rax)'
> ATL_zaxpy_xp1yp1aXbX.c:199:no such instruction: `vmovupd (%rdx,%rax), %ymm3'
> ATL_zaxpy_xp1yp1aXbX.c:200:no such instruction: `vshufpd $0x5,
> %ymm3,%ymm3,%ymm4'
> ATL_zaxpy_xp1yp1aXbX.c:201:no such instruction: `vmovupd (%rcx,%rax), %ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:202:no such instruction: `vmulpd %ymm0, %ymm3,%ymm3'
> ATL_zaxpy_xp1yp1aXbX.c:203:no such instruction: `vaddpd %ymm3, %ymm2,%ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:205:no such instruction: `vmulpd %ymm1, %ymm4,%ymm4'
> ATL_zaxpy_xp1yp1aXbX.c:206:no such instruction: `vaddpd %ymm4, %ymm2,%ymm2'
> ATL_zaxpy_xp1yp1aXbX.c:208:no such instruction: `vmovupd %ymm2, (%rcx,%rax)'
> make[6]: *** [ATL_zaxpy_xp1yp1aXbX.o] Error 1
> make[5]: *** [zgen] Error 2
> make[4]: *** [zlib] Error 2
> make[3]: *** [lib.grd] Error 2
> make[2]: *** [IStage1] Error 2
> ERROR 703 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR 
> DETAILS.
> cd /sw/src/fink.build/atlas-3.10.2-3/darwin_bld ;
> /Applications/Xcode.app/Contents/Developer/usr/bin/make error_report
> /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top 
> error_report
> uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
> /sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -v 2>&1  >>
> bin/INSTALL_LOG/ERROR.LOG
> Using built-in specs.
> COLLECT_GCC=/sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc
> COLLECT_LTO_WRAPPER=/sw/lib/gcc5/libexec/gcc/x86_64-apple-darwin13.4.0/5.4.0/lto-wrapper
> Target: x86_64-apple-darwin13.4.0
> Configured with: ../gcc-5.4.0/configure --prefix=/sw
> --prefix=/sw/lib/gcc5 --mandir=/sw/share/man
> --infodir=/sw/lib/gcc5/info
> --enable-languages=c,c++,fortran,lto,objc,obj-c++,java --with-gmp=/sw
> --with-libiconv-prefix=/sw --with-isl=/sw --with-mpc=/sw
> --with-system-zlib --program-suffix=-fsf-5
> Thread model: posix
> gcc version 5.4.0 (GCC)
> /sw/src/fink.build/atlas-3.10.2-3/opt-bin/gcc -V 2>&1  >>
> bin/INSTALL_LOG/ERROR.LOG
> gcc: error: unrecognized command line option '-V'
> gcc: fatal error: no input files
> compilation terminated.
> make[4]: