[Freesurfer] Averaging overlays/labels across subjects

2012-08-12 Thread raij

Dear Surfers,

I have (non-fMRI) .w format surface overlays/labels, computed at the
smoothwm surface in each individual subject, in 25 subjects. FS5.1
recon-all has been run for all T1 images.

I already managed to convert all individual surface overlays into the
surface space of one of the subjects (or fsaverage) using mri_surf2surf,
and in the process also converted the format from .w to .mgh (as I
understand .w is pretty much legacy).

Now, I would just need to compute an average across these overlays. I
would greatly appreciate any suggestions which FS tools to use for this.
Thank you in advance!

(In case it matters, the overlays are E-field estimates, with a numerical
value given for each vertex point. Also each overlay has only one time
point.)

Bests,

Tommi


---
Tommi Raij, MD, PhD
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
Bldg 149, 13th St
Charlestown, MA 02129
U.S.A.
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Re: [Freesurfer] Averaging overlays/labels across subjects

2012-08-12 Thread Douglas Greve
Hi Tommi, to compute an average, all you need to do is run

mri_concat file1.mgh file2.mgh ... fileN.mgh --mean --o average.mgh

doug



On 8/12/12 7:50 PM, r...@nmr.mgh.harvard.edu wrote:
 Dear Surfers,

 I have (non-fMRI) .w format surface overlays/labels, computed at the
 smoothwm surface in each individual subject, in 25 subjects. FS5.1
 recon-all has been run for all T1 images.

 I already managed to convert all individual surface overlays into the
 surface space of one of the subjects (or fsaverage) using mri_surf2surf,
 and in the process also converted the format from .w to .mgh (as I
 understand .w is pretty much legacy).

 Now, I would just need to compute an average across these overlays. I
 would greatly appreciate any suggestions which FS tools to use for this.
 Thank you in advance!

 (In case it matters, the overlays are E-field estimates, with a numerical
 value given for each vertex point. Also each overlay has only one time
 point.)

 Bests,

 Tommi


 ---
 Tommi Raij, MD, PhD
 MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
 Bldg 149, 13th St
 Charlestown, MA 02129
 U.S.A.
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.