External Email - Use Caution Hi Ece,
I believe you will find a walkthrough of the steps to do exactly what you want done on my lab wiki: http://ccnlab.psy.buffalo.edu/wiki/index.php/Annotation_Coordinates Hope this helps, Chris /********************************************** * Chris McNorgan * Assistant Professor * Department of Psychology * University at Buffalo, * The State University of New York * http://ccnlab.buffalo.edu/ * Office: 716.645.0236 * Lab: 716.645.0222 **********************************************/ On Nov 6, 2018, at 12:00 PM, freesurfer-requ...@nmr.mgh.harvard.edu<mailto:freesurfer-requ...@nmr.mgh.harvard.edu> wrote: Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-requ...@nmr.mgh.harvard.edu<mailto:freesurfer-requ...@nmr.mgh.harvard.edu> You can reach the person managing the list at freesurfer-ow...@nmr.mgh.harvard.edu<mailto:freesurfer-ow...@nmr.mgh.harvard.edu> When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..." Today's Topics: 1. Ynt: Ynt: ?lt: Desikan Atlas in volume space (ece ulug) From: ece ulug <eceulu...@hotmail.com<mailto:eceulu...@hotmail.com>> Subject: [Freesurfer] Ynt: Ynt: İlt: Desikan Atlas in volume space Date: November 6, 2018 at 6:37:17 AM EST To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> External Email - Use Caution Exactly. I cannot find in this file but i found lh.aparc.label and lh.aparc.annot files in freesurfer/subjects/fsaverage/label. Actually i told in my previous message. I need coordinates for generate caudalanteriorcingulate mask in coordinate system. ________________________________ Gönderen: Bruce Fischl <fis...@nmr.mgh.harvard.edu<mailto:fis...@nmr.mgh.harvard.edu>> adına freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> Gönderildi: 6 Kasım 2018 Salı 00:45 Kime: Freesurfer support list Konu: Re: [Freesurfer] Ynt: İlt: Desikan Atlas in volume space I don't think there is an lh.aparc.label file - I don't know what it would be if it existed. Maybe we can take a step back and you can let us know what you are trying to achieve? On Mon, 5 Nov 2018, ece ulug wrote: > > External Email - Use Caution > > Thanks for your reply doctor. Actually I want to access Desikan K. Atlas > coordinates as x, y, z. > (each regions. for example caudalanteriorcingulate). > > > In that case, one expert said that ; the closest to what you want is probably > $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.label. You can open it with > a text editor. Then > you should cross-check with > $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.annot for the actual > labels of those vertices. The .annot file can be opened in Matlab with the > read_annotation command > from FreeSurfer. > > > What do you recommend? > Ece > > ____________________________________________________________________________________________________ > Gönderen: Bruce Fischl > <fis...@nmr.mgh.harvard.edu<mailto:fis...@nmr.mgh.harvard.edu>> adına > freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> > Gönderildi: 5 Kasım 2018 Pazartesi 20:18 > Kime: Freesurfer support list > Konu: Re: [Freesurfer] İlt: Desikan Atlas in volume space > Hi Ece > > for a given subject the Desikan parcellation is sampled into the volume > alread in the file aparc+aseg.mgz in the subject's mri dir. Is that what > you are looking for? > > cheers > Bruce > > On Mon, 5 Nov 2018, ece ulug wrote: > > > > > External Email - Use Caution > > > > Dear Experts, > > > > > > I am very beginner in Freesurfer, and I want to use 'read_annotation' > > function but i don't know what is the next step. I added the Matlab > > screenshoot. > > > > > > Additionally; 'read_curv' function don't work in Matlab. I added it. > > > > > > Thanks in advance > > > > Ece > > > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
