Re: [Freesurfer] FS6.0 mri_surf2surf failure
I just tried it, and there was not a problem. Are you sure that
hem.fsaverage.nii.gz has non-zeros in it? Can you send it to me? What
platform are you using?
On 04/26/2017 11:55 AM, dongnandi1 wrote:
>
> Dear FS experts,
>
> I’m trying to transform some files from fsaverage space to fsaverage5
> space using mri_surf2surf(FS version: 6.0), however, it is weird that
> the results turn out to be all zeros on the fsaverage5 surface, the
> command line I used is :
> mri_surf2surf –srcsubject fsaverage –sval ${hemi}.fsaverage.nii.gz
> –hemi ${hemi} --cortex –trgsubject fsaverage5 –tval
> ${hemi}.fsaverage5.nii.gz –surfreg sphere.reg.
> There is no error reported.
>
> The strange thing is that it works well using FS5.3, it failed after I
> update to FS 6.0. Any suggestion of solving this?
>
> Many thanks!
> Best!
> Dong
>
>
>
>
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> Freesurfer mailing list
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[Freesurfer] FS6.0 mri_surf2surf failure
Dear FS experts,
I’m trying to transform some files from fsaverage space to fsaverage5 space
using mri_surf2surf(FS version: 6.0), however, it is weird that the results
turn out to be all zeros on the fsaverage5 surface, the command line I used is :
mri_surf2surf –srcsubject fsaverage –sval ${hemi}.fsaverage.nii.gz –hemi
${hemi} --cortex –trgsubject fsaverage5 –tval ${hemi}.fsaverage5.nii.gz
–surfreg sphere.reg.
There is no error reported.
The strange thing is that it works well using FS5.3, it failed after I update
to FS 6.0. Any suggestion of solving this?
Many thanks!
Best!
Dong___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
[Freesurfer] fs6.0 mri_surf2surf failure
Dear FS experts,
I'm trying to transform some files from fsaverage space to
fsaverage5 space using mri_surf2surf(fs version: 6.0), however, it is weird
that the results turn out to be all zeros on the fsaverage5 surface, the
command line I used if : mri_surf2surf -srcsubject fsaverage -sval
${hemi}.fsaverage.nii.gz -hemi ${hemi} --cortex -trgsubject fsaverage5
-tval ${hemi}.fsaverage5.nii.gz -surfreg sphere.reg. There is no error
reported.
The strange thing is that it works well using FS5.3, it failed
after I update to FS 6.0. Any suggestion of solving this?
Many thanks!
Best!
Dong
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
