Re: [Freesurfer] How to extract the GM and WM

2021-05-27 Thread Douglas N. Greve 

run it with -autorecon2 and -autorecon3


On 5/25/2021 1:47 PM, Camargo, Aldo wrote:


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Hi Bruce,


I was wondering if there is way to continue the process to recon-all 
once I have done the recon-all with the option -autorecon1.


Thanks a lot,

Aldo


*From:* freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Fischl, Bruce 


*Sent:* Monday, May 24, 2021 10:17 AM
*To:* Freesurfer support list 
*Subject:* Re: [Freesurfer] How to extract the GM and WM

Hi Aldo

Usually we just run recon-all with -all instead of the individual 
-autorecon options. This will give you pretty much everything, 
including GM and WM


Cheers

Bruce

*From:* freesurfer-boun...@nmr.mgh.harvard.edu 
 *On Behalf Of *Camargo, Aldo

*Sent:* Sunday, May 23, 2021 11:25 PM
*To:* Freesurfer support list 
*Subject:* [Freesurfer] How to extract the GM and WM

*External Email - Use Caution *

*External Email - Use Caution *

Hi Freesurfer experts:

I want to extract the White Matter and the Gray Matter from a T1 
image. I have extracted the brain by using the command:




recon-all with the option -autorecon1

Thanks a lot and have a nic day,

Aldo


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Re: [Freesurfer] How to extract the GM and WM

2021-05-25 Thread Camargo, Aldo 
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Hi Bruce,


I was wondering if there is way to continue the process to recon-all once I 
have done the recon-all with the option -autorecon1.

Thanks a lot,

Aldo


From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Fischl, Bruce 

Sent: Monday, May 24, 2021 10:17 AM
To: Freesurfer support list 
Subject: Re: [Freesurfer] How to extract the GM and WM


Hi Aldo



Usually we just run recon-all with -all instead of the individual -autorecon 
options. This will give you pretty much everything, including GM and WM



Cheers

Bruce



From: freesurfer-boun...@nmr.mgh.harvard.edu 
 On Behalf Of Camargo, Aldo
Sent: Sunday, May 23, 2021 11:25 PM
To: Freesurfer support list 
Subject: [Freesurfer] How to extract the GM and WM



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External Email - Use Caution

Hi Freesurfer experts:



I want to extract the White Matter and the Gray Matter from a T1 image. I have 
extracted the brain by using the command:




recon-all with the option -autorecon1



Thanks a lot and have a nic day,



Aldo
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Re: [Freesurfer] How to extract the GM and WM

2021-05-24 Thread Camargo, Aldo 
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Thanks a lot Bruce,

Have a nice day,

Aldo

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 On Behalf Of Fischl, Bruce
Sent: Monday, May 24, 2021 10:17 AM
To: Freesurfer support list 
Subject: Re: [Freesurfer] How to extract the GM and WM

Hi Aldo

Usually we just run recon-all with -all instead of the individual -autorecon 
options. This will give you pretty much everything, including GM and WM

Cheers
Bruce

From: 
freesurfer-boun...@nmr.mgh.harvard.edu
 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 On Behalf Of Camargo, Aldo
Sent: Sunday, May 23, 2021 11:25 PM
To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] How to extract the GM and WM


External Email - Use Caution

External Email - Use Caution
Hi Freesurfer experts:

I want to extract the White Matter and the Gray Matter from a T1 image. I have 
extracted the brain by using the command:

recon-all with the option -autorecon1

Thanks a lot and have a nic day,

Aldo
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Re: [Freesurfer] How to extract the GM and WM

2021-05-24 Thread Fischl, Bruce 
Hi Aldo

Usually we just run recon-all with -all instead of the individual -autorecon 
options. This will give you pretty much everything, including GM and WM

Cheers
Bruce

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 On Behalf Of Camargo, Aldo
Sent: Sunday, May 23, 2021 11:25 PM
To: Freesurfer support list 
Subject: [Freesurfer] How to extract the GM and WM


External Email - Use Caution

External Email - Use Caution
Hi Freesurfer experts:

I want to extract the White Matter and the Gray Matter from a T1 image. I have 
extracted the brain by using the command:



recon-all with the option -autorecon1

Thanks a lot and have a nic day,

Aldo
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The information in this e-mail is intended only for the person to whom it is 
addressed. If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If 
the e-mail was sent to you in error but does not contain patient information, 
please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

[Freesurfer] How to extract the GM and WM

2021-05-23 Thread Camargo, Aldo 
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Hi Freesurfer experts:

I want to extract the White Matter and the Gray Matter from a T1 image. I have 
extracted the brain by using the command:

recon-all with the option -autorecon1

Thanks a lot and have a nic day,

Aldo
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