Re: [Freesurfer] Installation problem on ubuntu 12.04.
Dear all, For the error freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory sudo apt-get install libjpeg62 did the trick. Freeview is running fine For the error *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* Any ideas? Thank you in advance! Markus 2014/1/27 Markus Gschwind markus.gschw...@gmail.com Dear experts! I installed freesurfer on a machine running Ubuntu 12.04. I have got some error messages when testing: ~$ freeview -v $SUBJECTS_DIR/bert/mri/norm.mgz -v $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red *freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory* ~$ tkmedit bert orig.mgz *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* and the same error also for tkurfer. Thank you for your help! Kind regards, Markus ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Installation problem on ubuntu 12.04.
Markus, I have never seen those errors before. But a little googling suggested perhaps running the program as follows: ~$ LIBGL_DEBUG=verbose ./tkmedit bert orig.mgz Im a little at a lose at what else to try because we have freesurfer installed on pretty much stock Ubuntu platforms and it runs as expected. Could you also try typing glxgears and tell me if a 3D window popups up displaying turning gears, or perhaps an error message is displayed? -Zeke On 01/28/2014 03:40 AM, Markus Gschwind wrote: Dear all, For the error freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory sudo apt-get install libjpeg62 did the trick. Freeview is running fine For the error *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* * * Any ideas? Thank you in advance! Markus 2014/1/27 Markus Gschwind markus.gschw...@gmail.com mailto:markus.gschw...@gmail.com Dear experts! I installed freesurfer on a machine running Ubuntu 12.04. I have got some error messages when testing: ~$ freeview -v $SUBJECTS_DIR/bert/mri/norm.mgz -v $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red *freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory* ~$ tkmedit bert orig.mgz *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* and the same error also for tkurfer. Thank you for your help! Kind regards, Markus ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Installation problem on ubuntu 12.04.
Dear Zeke, Thanks for stepping in! $ LIBGL_DEBUG=verbose tkmedit bert orig.mgz libGL: OpenDriver: trying /usr/lib/x86_64-linux-gnu/dri/tls/swrast_dri.so libGL: OpenDriver: trying /usr/lib/x86_64-linux-gnu/dri/swrast_dri.so libGL error: failed to load driver: swrast Reading /usr/local/freesurfer/tktools/tkm_common.tcl Reading /usr/local/freesurfer/tktools/tkm_wrappers.tcl Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /usr/local/freesurfer/tktools/tkUtils.tcl tkmedit seems fine though. ~$ glxgears libGL error: failed to load driver: swrast libGL error: Try again with LIBGL_DEBUG=verbose for more details. 21147 frames in 5.1 seconds = 4139.989 FPS 5715 frames in 5.0 seconds = 1135.272 FPS 5716 frames in 5.2 seconds = 1108.204 FPS 5715 frames in 5.1 seconds = 1110.123 FPS 5716 frames in 5.2 seconds = 1104.290 FPS 5455 frames in 5.2 seconds = 1058.021 FPS etc. I see three 3D gears (blue, red and green) which kind of wiggle... I mean, is this error really a problem or could I possible live with it? Thank you! Makrus 2014/1/28 Z K zkauf...@nmr.mgh.harvard.edu Markus, I have never seen those errors before. But a little googling suggested perhaps running the program as follows: ~$ LIBGL_DEBUG=verbose ./tkmedit bert orig.mgz Im a little at a lose at what else to try because we have freesurfer installed on pretty much stock Ubuntu platforms and it runs as expected. Could you also try typing glxgears and tell me if a 3D window popups up displaying turning gears, or perhaps an error message is displayed? -Zeke On 01/28/2014 03:40 AM, Markus Gschwind wrote: Dear all, For the error freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory sudo apt-get install libjpeg62 did the trick. Freeview is running fine For the error *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* * * Any ideas? Thank you in advance! Markus 2014/1/27 Markus Gschwind markus.gschw...@gmail.com mailto:markus.gschw...@gmail.com Dear experts! I installed freesurfer on a machine running Ubuntu 12.04. I have got some error messages when testing: ~$ freeview -v $SUBJECTS_DIR/bert/mri/norm.mgz -v $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red *freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory* ~$ tkmedit bert orig.mgz *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* and the same error also for tkurfer. Thank you for your help! Kind regards, Markus ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Installation problem on ubuntu 12.04.
Dear experts! I installed freesurfer on a machine running Ubuntu 12.04. I have got some error messages when testing: ~$ freeview -v $SUBJECTS_DIR/bert/mri/norm.mgz -v $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red *freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory* ~$ tkmedit bert orig.mgz *libGL error: failed to load driver: swrast* *libGL error: Try again with LIBGL_DEBUG=verbose for more details.* and the same error also for tkurfer. Thank you for your help! Kind regards, Markus ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
