Freesurfer universe, I noticed that the newer version of freesurfer does not output a ?h.base.mgh file, which contains vertices, but no triangular meshes and corresponding gyral labels from the color look up table.
Question: 1). Why does my cortical labels created using tksurfer correspond to the vertices in the base.mgh file and not the pial surface that I drew the surface on? 2). Is there a file in place of the ?h.base.mgh file in the newer version of freesurfer? My goal is to figure out which surface aligns with my manually created cortical labels for visualization. I am running version FSv5.0.0 on Centos4_x86_64 bit. Many thanks, Tina Jeon Biomedical Engineering Graduate Student Advanced Imaging Research Center UT Southwestern Medical Center P: (214) 645-2892 F: (214) 645-2885 ________________________________ UT Southwestern Medical Center The future of medicine, today.
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