Hi Jenny
1) yes, they are usually fine, but you *always* should look at the regions you
are hoping to make biological statements about.
2) mri_convert -rl rawavg.mgz -rt nearest aseg.mgz aseg.rawavg.nii
Wold convert the aseg. Not that they are already in the original RAS space,
just a different voxel space
Cheers
Bruce
On Dec 20, 2012, at 6:48 AM, Jenny Mercolini jennymercol...@gmail.com wrote:
Hi Freesurfers,
I am new to this software and i am trying to learn how to use it.
I have two questions:
1) if I do recon-all on a group of 20 subject, and I am primarily interested
in a few regions (In my case - amygdala, insula and anterior cingulate
cortex), do I have to edit all the datasets in tkmedit to make sure that
these ROIs are where they ar supposed to be?
2) What is the easiest way to convert recon'ed data from FreeSurfer space to
original subject space ( and mgz files to nifti files)?
Thank you so much for your help!
Kind regards, Jenny
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