Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-21 Thread Douglas N. Greve 
no special flags. 7.2 will update all of the files, it should preserve 
all your edits though


On 6/21/2022 7:21 AM, Aaron Tanenbaum wrote:


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Are there special flags. There are differences between autorecon1 for 
both pipeline. Does 7.2 update some of the files like for instance the 
T1.mgz do to differences in the normalizations.


On Sun, Jun 19, 2022, 3:55 PM Douglas N. Greve 
 wrote:


You should be able to run 7.2 on top of the 5.3 and at will take
all your edits (make a copy of your 5.3 data first:)


On 6/14/2022 5:26 PM, Aaron Tanenbaum wrote:


External Email - Use Caution

Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands
of scans to do.  I see that you can give freesurfer a brainmask.
I was thinking of giving freesurfer a brainmask from the previous
from 5.3 to 7.1. Is this a wise idea? Do you have any objections?

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Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-21 Thread Aaron Tanenbaum 
External Email - Use Caution

Are there special flags. There are differences between autorecon1 for both
pipeline. Does 7.2 update some of the files like for instance the T1.mgz do
to differences in the normalizations.

On Sun, Jun 19, 2022, 3:55 PM Douglas N. Greve 
wrote:

> You should be able to run 7.2 on top of the 5.3 and at will take all your
> edits (make a copy of your 5.3 data first:)
>
>
> On 6/14/2022 5:26 PM, Aaron Tanenbaum wrote:
>
> External Email - Use Caution
> Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans
> to do.  I see that you can give freesurfer a brainmask. I was thinking of
> giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a
> wise idea? Do you have any objections?
>
> ___
> Freesurfer mailing 
> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
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Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-19 Thread Douglas N. Greve 
You should be able to run 7.2 on top of the 5.3 and at will take all 
your edits (make a copy of your 5.3 data first:)



On 6/14/2022 5:26 PM, Aaron Tanenbaum wrote:


External Email - Use Caution

Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of 
scans to do.  I see that you can give freesurfer a brainmask. I was 
thinking of giving freesurfer a brainmask from the previous from 5.3 
to 7.1. Is this a wise idea? Do you have any objections?


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Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-15 Thread Bouchra Guelib 
External Email - Use Caution

Actually, I didn't try this idea and also I don't know what's the
difference between brain mask from previous versions.

Le mar. 14 juin 2022 à 22:39, Aaron Tanenbaum 
a écrit :

> External Email - Use Caution
>
> Great. glad I was of some help. I still need my questions answered.
>
> On Tue, Jun 14, 2022 at 4:33 PM Bouchra Guelib <
> bouchra.gue...@univ-constantine2.dz> wrote:
>
>> External Email - Use Caution
>>
>> The problem is solved, I just changed the freesurfer version , thnx for
>> your help
>>
>> Le mar. 14 juin 2022 à 22:27, Aaron Tanenbaum <
>> aaron.b.tanenb...@gmail.com> a écrit :
>>
>>> External Email - Use Caution
>>>
>>> Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans
>>> to do.  I see that you can give freesurfer a brainmask. I was thinking of
>>> giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a
>>> wise idea? Do you have any objections?
>>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> *MailScanner has detected a possible fraud attempt from
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>>> The information in this e-mail is intended only for the person to whom
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>>> the e-mail contains patient information, please contact the Mass General
>>> Brigham Compliance HelpLine at *MailScanner has detected a possible
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Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-14 Thread Aaron Tanenbaum 
External Email - Use Caution

Great. glad I was of some help. I still need my questions answered.

On Tue, Jun 14, 2022 at 4:33 PM Bouchra Guelib <
bouchra.gue...@univ-constantine2.dz> wrote:

> External Email - Use Caution
>
> The problem is solved, I just changed the freesurfer version , thnx for
> your help
>
> Le mar. 14 juin 2022 à 22:27, Aaron Tanenbaum 
> a écrit :
>
>> External Email - Use Caution
>>
>> Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans
>> to do.  I see that you can give freesurfer a brainmask. I was thinking of
>> giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a
>> wise idea? Do you have any objections?
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>> https://secure-web.cisco.com/1nQflonvh3tkXvAnWj_F4_5dClC9xAPDa5LzuhN21g8jzXaDyfLHM9k5UGsgzKMdKhfj2mPop6lGqgApBVqbu7O680JCfAbV3Ud-EBNI73Dua6-tTc2plfbZZO2EkTnVq-tW8T3zh3jTY73pkZTlI4CgBpVns0ZC8wp0P4LT-njUYGvQO95qCO3exOXh1YB6Laht_96wAkQI07hj_onKG2Fl8NTjg5WiV1QfSxO-CPzH1FxDLownvaNKDvsKcS8dWm9wWOJEJxJqsTErbT9ILZ8JyZbnGF6DWBtgwoAqPPyzaThyUEo70e5zESoq6_1anP3rGN924np_2VY-1LY46WA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
>> 
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Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-14 Thread Bouchra Guelib 
External Email - Use Caution

The problem is solved, I just changed the freesurfer version , thnx for
your help

Le mar. 14 juin 2022 à 22:27, Aaron Tanenbaum 
a écrit :

> External Email - Use Caution
>
> Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans
> to do.  I see that you can give freesurfer a brainmask. I was thinking of
> giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a
> wise idea? Do you have any objections?
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://secure-web.cisco.com/1MkjLfq-0LdmcCfYdV5NcT8yAoB2BE40dzzC_MoD-rkVBPdua6CFc5zuW22ZDsJQueMEBZCnW70AX1EA9jL95dEKdpGZbsJ4inOEKlO5dVFFF4PkJlpbut1xTLLHc17yBoB5G2KkBi1k3LLzxB5-bVlsKznWsIwTb7Iwelti7C1g5YI2vaZnrUhNYGrRASi4CsPMwBwFmo9P3VtXJadCivfSb3WGEvHlSCDA3UmJnguymAeZ-E8RuL-O9fiYD-f63cCgviLqzOeYlBCkowJTn74foJCctednnrv9ihTACvrglGjnB-z6jFzaRU5ZY1WjVjSmfwrDNGg9hp3pUBtqfiA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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>  <
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>  .
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[Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-14 Thread Aaron Tanenbaum 
External Email - Use Caution

Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans to
do.  I see that you can give freesurfer a brainmask. I was thinking of
giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a
wise idea? Do you have any objections?
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