Re: [Freesurfer] volume and mean intensity values from single nii file with multiple ROIs

2018-12-06 Thread Greve, Douglas N.,Ph.D. 
Use mri_segstats. Run with --help to get more info

On 12/03/2018 06:12 AM, Anik Dar wrote:
>
> External Email - Use Caution
>
> Dear All,
>
> I have segmented the midbrain of each subjects into different 
> subregions (peduncle, substantia nigra, red nucleus etc) using an 
> atlas. I am trying to extract the volume of each region (the regions 
> are labeled 101, 102, 103 etc) and also trying to extract the mean 
> intensity from MPRAGE from each of these regions.
>
> Is there a way to do this in freesurfer tools ? I realize that there 
> is no color lut / index file associated with this atlas in freesurfer.
>
> Please let me know.
>
> Thank you,
>
> Ani
>
>
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[Freesurfer] volume and mean intensity values from single nii file with multiple ROIs

2018-12-03 Thread Anik Dar 
External Email - Use Caution

Dear All,

I have segmented the midbrain of each subjects into different subregions
(peduncle, substantia nigra, red nucleus etc) using an atlas. I am trying
to extract the volume of each region (the regions are labeled 101, 102, 103
etc) and also trying to extract the mean intensity from MPRAGE from each of
these regions.

Is there a way to do this in freesurfer tools ? I realize that there is no
color lut / index file associated with this atlas in freesurfer.

Please let me know.

Thank you,

Ani
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