External Email - Use Caution
I tried to confirm VBM analysis lots of platform i study in CAT, these days.
Thanks for your reply.
Greve, Douglas N.,Ph.D. şunları yazdı (11 Eki 2018
18:47):
> Which template surface? fsaverage? Are you using the 2mm MNI template
> for VBM? If so, then you can use mri_label2vol specifying the desikan
> annotation as the --annot and using
> $FREESURFER_HOME/average/mni152.register.dat as the registration file.
>
>> On 10/11/2018 11:42 AM, ece ulug wrote:
>>
>> External Email - Use Caution
>>
>> Thanks for your response;
>>
>>
>> I had already mapped normalized volume to template surface, so now I
>> want to map the desikan atlas into the vbm volume.
>>
>>
>>
>>
>> *Gönderen:* Greve, Douglas N.,Ph.D. adına
>> freesurfer-boun...@nmr.mgh.harvard.edu
>>
>> *Gönderildi:* 11 Ekim 2018 Perşembe 18:26
>> *Kime:* freesurfer@nmr.mgh.harvard.edu
>> *Konu:* Re: [Freesurfer] Ynt: Desikan Atlas in MNI Space
>> I'm not sure what you are trying to do. Do you want to map the vbm
>> results to the surface and visualize the aparc (desikan atlas) or do you
>> want to map the aparc into the vbm volume?
>>
>>> On 10/11/2018 09:59 AM, ece ulug wrote:
>>>
>>> External Email - Use Caution
>>>
>>> Hi,
>>>
>>> May be i cannot tell well,
>>>
>>>
>>> I would like to use the Desikan atlas, which is a surface-based atlas
>>> normally, as a volume template.
>>>
>>> Generally Desikan_surface.gii file is accesible. Can I visualize VBM
>>> results correctly in for instances SPMglass brain using Desikan
>> Atlas.nii?
>>>
>>>
>>> Ece
>>>
>>>
>>>
>>> *Gönderen:* ece ulug
>>> *Gönderildi:* 10 Ekim 2018 Çarşamba 12:27
>>> *Kime:* freesurfer@nmr.mgh.harvard.edu
>>> *Konu:* Desikan Atlas in MNI Space
>>>> /Dear All,/
>>>> /
>>>> I am a master student in Turkey. For my thesis; I have to do exactly
>>>> this;
>>>>
>>>> /
>>>> /*Desikan atlas (which I have in the tailarach space) in the MNI
>>>> space, as a file (Desikan_mni.nii). I am aware that transforming from
>>>> one space to the other is not a very good idea but nevertheless I
>>>> would like to test some computations.
>>>>
>>>> Anyone can attach/send a link/know of if exists such a file? the
>>>> aparc+aseg.mgz in fsaverage is in mni305 space. will that work?
>>>> */
>>>> /This is a mail dated 2014, freesurfer maillist, and I find this via
>>>> internet./
>>>> /Desikan Atlas 'aparc+aseg.mgz' or .nii format where should I look for
>>>> these file? /
>>>> /And what is your opinion, is it good idea? /
>>>> /(To transform Desikan atlas to mni space for visualization VBM
>>>> results?) /
>>>> /Thanks in advance/
>>>> /E. Ece Uluğ/
>>>
>>>
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