[galaxy-dev] help on wig file
Hello, How can I change the chromosome name on a wig file to chr? FOr whatever reason when I try feeding this file with the program i am working with (CEAS package) it gives me an error. But when I use a wig file with chr it works fine This is how my wiggle file looks like: track type=wiggle_0 name=MACS_in_Galaxy_treat_CHROMOSOME_II description=Shifted Merged MACS tag counts for every 1 bp variableStep chrom=CHROMOSOME_II span=1 1 3 2 4 3 5 And this is how I need it to be: track type=wiggle_0 name=MACS_in_Galaxy_treat_I description=Shifted Merged MACS tag counts for every 1 bp variableStep chrom=I span=1 570 1 571 1 572 1 thanks alfonso ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] deleting and free space
you can go to options. then click on show deleted datasets. then this will make appear all datasets that have been deleted but are not yet removed from the disk. You will see something like this: This dataset has been deleted. Click here to undelete or here to immediately remove it from disk. Then just click to immediatly remove from disk and will do the work. i hope this helps. alfonso ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] job output not returned from cluster
Hi all, I am using galaxy on the cloud and I keep getting the following error: An error occurred running this job: Job output not returned from cluster Any clues? thanks Alfonso ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] ce10
Hello, Could somebody please help me uploading the C. elegans genome (Ce10) into galaxy on the cloud? thanks alfonso ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] MACS not found
Hello, I am new in using galaxy on the cloud. I am trying to analyze my ChIP-seq data. However, when I try to run the MACS peak calling algorithm on my BAM files I get an error message saying MACS: not found. Any ideas? thanks! ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
