[galaxy-dev] CuffDiff read group tracking
Hey Galaxy, I am trying to use CuffDIff with replicate analysis on a local instance. I saw that Jeremy Goecks had a solution to this problem: http://user.list.galaxyproject.org/Cuffdiff-changes-tt4655893.html#a4655901. Could I see/use this source code please? I can't really wait until the next update. Thanks, Matt Paul ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Made some additions
Hey guys, I have been working witha local Galaxy for a couple of months now on a cluster. I have created a few tools and would like to know if you would like to include them in the central repository (or how I go about suggesting so). I created a statisticss computer for de novo assembly builds. Returns information on the spread of the contigs, the N50, and mean. I have also created a wrapper for trans-abyss (SE and PE) and my partner created a wrapper for trimmomatic (SE and PE). Let me know what you think, Thanks ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Regarding bug card #572 (Trello) and Galaxy Public Server
Regarding this issue ( https://trello.com/card/filter-and-sort-select-tool-not-dealing-with-special-characters-right/506338ce32ae458f6d15e4b3/572 ): No bug is apparent when using an up-to-date local instance of Galaxy (local history on Trello card). However, when using the Galaxy public server the bug is apparent (regular expressions are not registered). So we have come to a few conjectures, 1) The bug has already been fixed in the newest version of Galaxy or 2) Somehow, instantiating the public server is the source of the error (which is unlikely). If one can elucidate any misconceptions (especially about the current version of the Galaxy public server) that we may have that would be great. We would like to resolve this bug. Thank You ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Fwd: Desire to contribute
Dear Galaxy Project community, I am working with a group of students at College of Charleston of South Carolina. Being interested in bioinformatics and software engineering, we chose to work on Galaxy for our open source class project. We are subscribed to the appropriate mailing list, have been accessing Trello and are becoming familiar with the Galaxy architecture. Our first assignment is to identify and fix a bug, but unfortunately the bugs reported seem to be going right over our heads.Where would be a good place to start, so that we may be able to contribute to your system (documentation, etc)? We are looking forward to your response. Thank you, Matt Paul -- Forwarded message -- From: Matthew Paul mrp...@g.cofc.edu Date: Tue, Feb 5, 2013 at 8:10 PM Subject: Desire to contribute To: galaxy-dev@lists.bx.psu.edu Dear Galaxy Project community, ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
