Re: [galaxy-dev] Datatype dropdown only 8px wide

[Peter Waltman]

I'm seeing something similar with a local galaxy-dist install that was also
installed from bitbucket about 1.5-2 weeks ago, however, in my case, the
width is set to 6px, e.g. div class=select2-container id=s2id_autogen2
style=width: 6px.

In fact, I started seeing this after I upgraded a previous install - and
based on this behavior, I did a complete re-install, but am still getting
it.

Does anyone know whether or not this has been fixed and pushed back to
repository so we can pull the fix?

On Fri, Mar 1, 2013 at 3:59 PM, Kelvin Chan kelvin.c...@seqmatic.comwrote:

 Hello,

 ** **

 I am having a slight issue with the Datatype tab of the edit page. I am
 using a locally installed version of galaxy-dist obtained from bitbucket. I
 cannot see anything in the dropdown menu to change the datatype. According
 to the HTML, the box is only 8px wide. div class=select2-container
 id=s2id_autogen2 style=width: 8px Is there any way to fix this problem
 without having to re-install galaxy?

 ** **

 Thanks,

 Kelvin

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-- 
Peter Waltman, Ph.D.
pwalt...@ucsc.edu
617.347.1876
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[galaxy-dev] Error on the sandbox toolshed when updating files

[Peter Waltman]

Hi -

I was only trying to upload a new gzipped-tarfile with new files to a
repository that I own on the sandbox toolshed server, and get the following
error:

Server ErrorURL:
http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d
Module paste.exceptions.errormiddleware:*144* in __call__
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
app_iter *=* self*.*application*(*environ*,* sr_checker*)*
Module paste.debug.prints:*106* in __call__
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
environ*,* self*.*app*)*
Module paste.wsgilib:*543* in intercept_output
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
app_iter *=* application*(*environ*,* replacement_start_response*)*
Module paste.recursive:*84* in __call__
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
*return* self*.*application*(*environ*,* start_response*)*
Module paste.httpexceptions:*633* in __call__
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
*return* self*.*application*(*environ*,* start_response*)*
Module galaxy.web.framework.base:*128* in __call__
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
*return* self*.*handle_request*(* environ*,* start_response *)*
Module galaxy.web.framework.base:*184* in handle_request
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
body *=* method*(* trans*,* kwargs *)*
Module galaxy.web.framework:*94* in decorator
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
*return* func*(* self*,* trans*,* ***args*,* kwargs *)*
Module galaxy.webapps.tool_shed.controllers.upload:*108* in upload
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
self*.*upload_tar*(* trans*,* repository*,* tar*,* uploaded_file*,*
upload_point*,* remove_repo_files_not_in_tar*,* commit_message*,*
new_repo_alert *)*
Module galaxy.webapps.tool_shed.controllers.upload:*283* in upload_tar
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
*return* self*.*__handle_directory_changes*(*trans*,* repository*,*
full_path*,* filenames_in_archive*,* remove_repo_files_not_in_tar*,*
new_repo_alert*,* commit_message*,* undesirable_dirs_removed*,*
undesirable_files_removed*)*
Module galaxy.webapps.tool_shed.controllers.upload:*345* in
__handle_directory_changes
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
commands*.*commit*(* repo*.*ui*,* repo*,* full_path*,* user*=*trans*.*user*.
*username*,* message*=*commit_message *)*
Module mercurial.commands:*1279* in commit
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
node *=* cmdutil*.*commit*(*ui*,* repo*,* commitfunc*,* pats*,* opts*)*
Module mercurial.cmdutil:*1294* in commit
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
scmutil*.*match*(*repo*[*None*]**,* pats*,* opts*)**,* opts*)*
Module mercurial.commands:*1277* in commitfunc
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
match*,* editor*=*e*,* extra*=*extra*)*
Module mercurial.localrepo:*1199* in commit
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
ret *=* self*.*commitctx*(*cctx*,* True*)*
Module mercurial.localrepo:*1270* in commitctx
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
p2*.*manifestnode*(**)**,* *(*new*,* drop*)**)*
Module mercurial.manifest:*197* in add
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
cachedelta *=* *(*self*.*rev*(*p1*)**,* addlistdelta*(*addlist*,* delta*)**)
*
Module mercurial.manifest:*124* in addlistdelta
  
 http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=f5109f746542d96d#
addlist*[*start*:*end*]* *=* array*.*array*(*'c'*,* content*)*
*TypeError: array item must be char*

Is there a better way to upload updated files to those repositories?

-- 
Peter Waltman, Ph.D.
pwalt...@ucsc.edu
617.347.187
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